[package - main-i386-default][science/R-cran-AMORE] Failed for R-cran-AMORE-0.2.14_7 in stage
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Date: Sat, 09 Apr 2022 03:12:59 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: wen@FreeBSD.org
Log URL: http://beefy17.nyi.freebsd.org/data/main-i386-default/p728f1c6fa6cb_sa8267ecc3d/logs/R-cran-AMORE-0.2.14_7.log
Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=main-i386-default&build=p728f1c6fa6cb_sa8267ecc3d
Log:
=>> Building science/R-cran-AMORE
build started at Sat Apr 9 03:12:31 UTC 2022
port directory: /usr/ports/science/R-cran-AMORE
package name: R-cran-AMORE-0.2.14_7
building for: FreeBSD main-i386-default-job-12 14.0-CURRENT FreeBSD 14.0-CURRENT 1400056 i386
maintained by: wen@FreeBSD.org
Makefile ident:
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Job Id: 12
!!! Jail is newer than host. (Jail: 1400056, Host: 1400053) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" XDG_DATA_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work/.cache HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/R-cran-AMORE/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--PLIST_SUB--
R_MOD_DIR=lib/R/library/AMORE OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/AMORE" EXAMPLESDIR="share/examples/AMORE" DATADIR="share/AMORE" WWWDIR="www/AMORE" ETCDIR="etc/AMORE"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/AMORE DOCSDIR=/usr/local/share/doc/AMORE EXAMPLESDIR=/usr/local/share/examples/AMORE WWWDIR=/usr/local/www/AMORE ETCDIR=/usr/local/etc/AMORE
--End SUB_LIST--
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=======================<phase: check-sanity >============================
===> License GPLv2 GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> R-cran-AMORE-0.2.14_7 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5_1.pkg
[main-i386-default-job-12] Installing pkg-1.17.5_1...
[main-i386-default-job-12] Extracting pkg-1.17.5_1: .......... done
===> R-cran-AMORE-0.2.14_7 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of R-cran-AMORE-0.2.14_7
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-AMORE-0.2.14_7 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-AMORE-0.2.14_7 for building
=> SHA256 Checksum OK for AMORE_0.2-14.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-AMORE-0.2.14_7 for building
===> Extracting for R-cran-AMORE-0.2.14_7
=> SHA256 Checksum OK for AMORE_0.2-14.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for R-cran-AMORE-0.2.14_7
===========================================================================
=======================<phase: build-depends >============================
===> R-cran-AMORE-0.2.14_7 depends on file: /usr/local/bin/R - not found
===> Installing existing package /packages/All/R-4.1.3_1.pkg
[main-i386-default-job-12] Installing R-4.1.3_1...
[main-i386-default-job-12] `-- Installing cairo-1.17.4,3...
[main-i386-default-job-12] | `-- Installing fontconfig-2.13.94_2,1...
<snip>
[main-i386-default-job-12] | `-- Installing libXft-2.3.4...
[main-i386-default-job-12] | `-- Extracting libXft-2.3.4: .......... done
[main-i386-default-job-12] | `-- Installing xorg-fonts-truetype-7.7_1...
[main-i386-default-job-12] | | `-- Installing dejavu-2.37_1...
[main-i386-default-job-12] | | `-- Installing mkfontscale-1.2.1...
[main-i386-default-job-12] | | | `-- Installing libfontenc-1.1.4...
[main-i386-default-job-12] | | | `-- Extracting libfontenc-1.1.4: ......... done
[main-i386-default-job-12] | | `-- Extracting mkfontscale-1.2.1: ....... done
[main-i386-default-job-12] | | `-- Extracting dejavu-2.37_1: .......... done
[main-i386-default-job-12] | | `-- Installing font-bh-ttf-1.0.3_4...
[main-i386-default-job-12] | | `-- Extracting font-bh-ttf-1.0.3_4: .......... done
[main-i386-default-job-12] | | `-- Installing font-misc-ethiopic-1.0.4...
[main-i386-default-job-12] | | `-- Extracting font-misc-ethiopic-1.0.4: ...... done
[main-i386-default-job-12] | | `-- Installing font-misc-meltho-1.0.3_4...
[main-i386-default-job-12] | | `-- Extracting font-misc-meltho-1.0.3_4: .......... done
[main-i386-default-job-12] `-- Extracting pango-1.50.6: .......... done
[main-i386-default-job-12] `-- Installing pcre2-10.39_1...
[main-i386-default-job-12] `-- Extracting pcre2-10.39_1: .......... done
[main-i386-default-job-12] `-- Installing tcl86-8.6.12...
[main-i386-default-job-12] `-- Extracting tcl86-8.6.12: .......... done
[main-i386-default-job-12] `-- Installing tk86-8.6.12...
[main-i386-default-job-12] `-- Extracting tk86-8.6.12: .......... done
[main-i386-default-job-12] Extracting R-4.1.3_1: .......... done
Running fc-cache to build fontconfig cache...
Compiling glib schemas
No schema files found: doing nothing.
=====
Message from freetype2-2.11.1:
--
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).
The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:
FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
cff:no-stem-darkening=1 \
autofitter:warping=1
This allows to select, say, the subpixel hinting mode at runtime for a given
application.
If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:
FREETYPE_PROPERTIES=pcf:no-long-family-names=1
How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv
The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
=====
Message from python38-3.8.13:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py38-gdbm databases/py-gdbm@py38
py38-sqlite3 databases/py-sqlite3@py38
py38-tkinter x11-toolkits/py-tkinter@py38
=====
Message from ca_root_nss-3.76:
--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.
Assessment and verification of trust is the complete responsibility of the
system administrator.
This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
=====
Message from gcc10-10.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc10
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from trousers-0.3.14_3:
--
To run tcsd automatically, add the following line to /etc/rc.conf:
tcsd_enable="YES"
You might want to edit /usr/local/etc/tcsd.conf to reflect your setup.
If you want to use tcsd with software TPM emulator, use the following
configuration in /etc/rc.conf:
tcsd_enable="YES"
tcsd_mode="emulator"
tpmd_enable="YES"
To use TPM, add your_account to '_tss' group like following:
# pw groupmod _tss -m your_account
=====
Message from ghostscript9-agpl-base-9.55.0_1:
--
This package installs a script named dvipdf that depends on dvips. If you
want to use this script you need to install print/tex-dvipsk.
=====
Message from dejavu-2.37_1:
--
Make sure that the freetype module is loaded. If it is not, add the following
line to the "Modules" section of your X Windows configuration file:
Load "freetype"
Add the following line to the "Files" section of X Windows configuration file:
FontPath "/usr/local/share/fonts/dejavu/"
Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
===> R-cran-AMORE-0.2.14_7 depends on file: /usr/local/bin/R - found
===> Returning to build of R-cran-AMORE-0.2.14_7
===> R-cran-AMORE-0.2.14_7 depends on executable: gfortran10 - found
===> R-cran-AMORE-0.2.14_7 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for R-cran-AMORE-0.2.14_7
===========================================================================
=======================<phase: build >============================
===========================================================================
=======================<phase: run-depends >============================
===> R-cran-AMORE-0.2.14_7 depends on file: /usr/local/bin/R - found
===> R-cran-AMORE-0.2.14_7 depends on executable: gfortran10 - found
===========================================================================
=======================<phase: stage >============================
===> Staging for R-cran-AMORE-0.2.14_7
===> Generating temporary packing list
* installing *source* package 'AMORE' ...
** package 'AMORE' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/R-cran-AMORE/work/AMORE/src'
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c ADAPTgd.c -o ADAPTgd.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c ADAPTgdwm.c -o ADAPTgdwm.o
ADAPTgdwm.c:136:73: warning: relational comparison result unused [-Wunused-comparison]
ptneuron->method_dep_variables.adaptgdwm.former_bias_change <- bias_change;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
1 warning generated.
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c BATCHgd.c -o BATCHgd.o
In file included from BATCHgd.c:16:
/usr/include/omp.h:484:39: error: expected 'match' clause on 'omp declare variant' directive
#pragma omp begin declare variant match(device={kind(host)})
^
/usr/local/lib/R/include/Rinternals.h:1640:17: note: expanded from macro 'match'
#define match Rf_match
^
In file included from BATCHgd.c:16:
/usr/include/omp.h:487:39: error: expected 'match' clause on 'omp declare variant' directive
#pragma omp begin declare variant match(device={kind(nohost)})
^
/usr/local/lib/R/include/Rinternals.h:1640:17: note: expanded from macro 'match'
#define match Rf_match
^
2 errors generated.
gmake[1]: *** [/usr/local/lib/R/etc/Makeconf:168: BATCHgd.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/R-cran-AMORE/work/AMORE/src'
ERROR: compilation failed for package 'AMORE'
* removing '/wrkdirs/usr/ports/science/R-cran-AMORE/work/stage/usr/local/lib/R/library/AMORE'
*** Error code 1
Stop.
make: stopped in /usr/ports/science/R-cran-AMORE