[package - main-amd64-default][math/py-fastcluster] Failed for py38-fastcluster-1.2.6 in build
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Date: Sat, 09 Apr 2022 02:56:42 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: http://beefy18.nyi.freebsd.org/data/main-amd64-default/p728f1c6fa6cb_sa8267ecc3d/logs/py38-fastcluster-1.2.6.log
Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=main-amd64-default&build=p728f1c6fa6cb_sa8267ecc3d
Log:
=>> Building math/py-fastcluster
build started at Sat Apr 9 02:56:25 UTC 2022
port directory: /usr/ports/math/py-fastcluster
package name: py38-fastcluster-1.2.6
building for: FreeBSD main-amd64-default-job-11 14.0-CURRENT FreeBSD 14.0-CURRENT 1400056 amd64
maintained by: sunpoet@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400050
Jail OSVERSION: 1400056
Job Id: 11
!!! Jail is newer than host. (Jail: 1400056, Host: 1400050) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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--MAINTAINER--
sunpoet@FreeBSD.org
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#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
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#### /usr/ports/Mk/Scripts/ports_env.sh ####
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CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
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CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
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kqueues (-k) unlimited
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--End resource limits--
=======================<phase: check-sanity >============================
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py38-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5_1.pkg
[main-amd64-default-job-11] Installing pkg-1.17.5_1...
[main-amd64-default-job-11] Extracting pkg-1.17.5_1: .......... done
===> py38-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py38-fastcluster-1.2.6
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py38-fastcluster-1.2.6 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py38-fastcluster-1.2.6 for building
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py38-fastcluster-1.2.6 for building
===> Extracting for py38-fastcluster-1.2.6
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py38-fastcluster-1.2.6
===========================================================================
=======================<phase: build-depends >============================
===> py38-fastcluster-1.2.6 depends on package: py38-numpy>=0,1 - not found
===> Installing existing package /packages/All/py38-numpy-1.20.3,1.pkg
[main-amd64-default-job-11] Installing py38-numpy-1.20.3,1...
[main-amd64-default-job-11] `-- Installing gcc10-10.3.0...
[main-amd64-default-job-11] | `-- Installing binutils-2.37_2,1...
[main-amd64-default-job-11] | | `-- Installing gettext-runtime-0.21...
[main-amd64-default-job-11] | | `-- Installing indexinfo-0.3.1...
[main-amd64-default-job-11] | | `-- Extracting indexinfo-0.3.1: .... done
[main-amd64-default-job-11] | | `-- Extracting gettext-runtime-0.21: .......... done
[main-amd64-default-job-11] | `-- Extracting binutils-2.37_2,1: .......... done
[main-amd64-default-job-11] | `-- Installing gmp-6.2.1...
[main-amd64-default-job-11] | `-- Extracting gmp-6.2.1: .......... done
[main-amd64-default-job-11] | `-- Installing mpc-1.2.1...
[main-amd64-default-job-11] | | `-- Installing mpfr-4.1.0_1...
[main-amd64-default-job-11] | | `-- Extracting mpfr-4.1.0_1: .......... done
[main-amd64-default-job-11] | `-- Extracting mpc-1.2.1: ......... done
[main-amd64-default-job-11] `-- Extracting gcc10-10.3.0: .......... done
[main-amd64-default-job-11] `-- Installing openblas-0.3.20,1...
[main-amd64-default-job-11] `-- Extracting openblas-0.3.20,1: .......... done
[main-amd64-default-job-11] `-- Installing py38-setuptools-57.0.0...
[main-amd64-default-job-11] | `-- Installing python38-3.8.13...
[main-amd64-default-job-11] | | `-- Installing libffi-3.3_1...
[main-amd64-default-job-11] | | `-- Extracting libffi-3.3_1: .......... done
[main-amd64-default-job-11] | | `-- Installing mpdecimal-2.5.1...
[main-amd64-default-job-11] | | `-- Extracting mpdecimal-2.5.1: .......... done
[main-amd64-default-job-11] | | `-- Installing readline-8.1.2...
[main-amd64-default-job-11] | | `-- Extracting readline-8.1.2: .......... done
[main-amd64-default-job-11] | `-- Extracting python38-3.8.13: .......... done
[main-amd64-default-job-11] `-- Extracting py38-setuptools-57.0.0: .......... done
[main-amd64-default-job-11] `-- Installing suitesparse-umfpack-5.7.9...
[main-amd64-default-job-11] | `-- Installing metis-5.1.0_9...
[main-amd64-default-job-11] | `-- Extracting metis-5.1.0_9: .......... done
[main-amd64-default-job-11] | `-- Installing suitesparse-amd-2.4.6...
[main-amd64-default-job-11] | | `-- Installing suitesparse-config-5.10.1...
[main-amd64-default-job-11] | | `-- Extracting suitesparse-config-5.10.1: ......... done
[main-amd64-default-job-11] | `-- Extracting suitesparse-amd-2.4.6: .......... done
[main-amd64-default-job-11] | `-- Installing suitesparse-camd-2.4.6...
[main-amd64-default-job-11] | `-- Extracting suitesparse-camd-2.4.6: ......... done
[main-amd64-default-job-11] | `-- Installing suitesparse-ccolamd-2.9.6...
[main-amd64-default-job-11] | `-- Extracting suitesparse-ccolamd-2.9.6: ........ done
[main-amd64-default-job-11] | `-- Installing suitesparse-cholmod-3.0.14...
[main-amd64-default-job-11] | | `-- Installing suitesparse-colamd-2.9.6...
[main-amd64-default-job-11] | | `-- Extracting suitesparse-colamd-2.9.6: ........ done
[main-amd64-default-job-11] | `-- Extracting suitesparse-cholmod-3.0.14: .......... done
[main-amd64-default-job-11] `-- Extracting suitesparse-umfpack-5.7.9: .......... done
[main-amd64-default-job-11] Extracting py38-numpy-1.20.3,1: .......... done
=====
Message from gcc10-10.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc10
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python38-3.8.13:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py38-gdbm databases/py-gdbm@py38
py38-sqlite3 databases/py-sqlite3@py38
py38-tkinter x11-toolkits/py-tkinter@py38
=====
Message from metis-5.1.0_9:
--
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> py38-fastcluster-1.2.6 depends on package: py38-numpy>=0,1 - found
===> Returning to build of py38-fastcluster-1.2.6
===> py38-fastcluster-1.2.6 depends on package: py38-setuptools>0 - found
===> py38-fastcluster-1.2.6 depends on file: /usr/local/bin/python3.8 - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py38-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.8.13 (default, Apr 2 2022, 01:28:36)
[Clang 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a
running config
===========================================================================
=======================<phase: build >============================
===> Building for py38-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.8.13 (default, Apr 2 2022, 01:28:36)
[Clang 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a
running build
running build_py
creating build
creating build/lib.freebsd-14.0-CURRENT-amd64-3.8
copying fastcluster.py -> build/lib.freebsd-14.0-CURRENT-amd64-3.8
running build_ext
building '_fastcluster' extension
creating build/temp.freebsd-14.0-CURRENT-amd64-3.8
creating build/temp.freebsd-14.0-CURRENT-amd64-3.8/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.8/site-packages/numpy/core/include -I/usr/local/include/python3.8 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-3.8/src/fastcluster_python.o
In file included from src/fastcluster_python.cpp:62:
src/fastcluster.cpp:53:9: warning: Use fenv header. [-W#pragma-messages]
#pragma message("Use fenv header.")
^
Assertion failed: ((CGF.CurFuncDecl == nullptr || CGF.Builder.getIsFPConstrained() || isa<CXXConstructorDecl>(CGF.CurFuncDecl) || isa<CXXDestructorDecl>(CGF.CurFuncDecl) || (NewExceptionBehavior == llvm::fp::ebIgnore && NewRoundingBehavior == llvm::RoundingMode::NearestTiesToEven)) && "FPConstrained should be enabled on entire function"), function ConstructorHelper, file /usr/local/poudriere/jails/main-amd64/usr/src/contrib/llvm-project/clang/lib/CodeGen/CodeGenFunction.cpp, line 174.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.8/site-packages/numpy/core/include -I/usr/local/include/python3.8 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-3.8/src/fastcluster_python.o
1. <eof> parser at end of file
2. Per-file LLVM IR generation
3. /usr/include/c++/v1/string:1578:10: Generating code for declaration 'std::basic_string<char>::__init'
#0 0x0000000004f64260 (/usr/bin/cc+0x4f64260)
#1 0x0000000004f62575 (/usr/bin/cc+0x4f62575)
#2 0x0000000004ef98be (/usr/bin/cc+0x4ef98be)
#3 0x0000000004ef9a83 (/usr/bin/cc+0x4ef9a83)
#4 0x000000082a5446a0 (/lib/libthr.so.3+0x1a6a0)
#5 0x000000082a543c5f (/lib/libthr.so.3+0x19c5f)
#6 0x00007ffffffff8a3 ([vdso]+0x2d3)
#7 0x000000082d9a805a __sys_thr_kill (/lib/libc.so.7+0x13e05a)
#8 0x000000082d920454 _raise (/lib/libc.so.7+0xb6454)
#9 0x000000082d9d1e49 abort (/lib/libc.so.7+0x167e49)
#10 0x000000082d903121 (/lib/libc.so.7+0x99121)
#11 0x0000000002956c5b (/usr/bin/cc+0x2956c5b)
#12 0x000000000293463a (/usr/bin/cc+0x293463a)
#13 0x000000000296020a (/usr/bin/cc+0x296020a)
#14 0x000000000296f827 (/usr/bin/cc+0x296f827)
#15 0x0000000002979b1c (/usr/bin/cc+0x2979b1c)
#16 0x000000000295e4cd (/usr/bin/cc+0x295e4cd)
#17 0x000000000295f00e (/usr/bin/cc+0x295f00e)
#18 0x00000000024dcaf9 (/usr/bin/cc+0x24dcaf9)
#19 0x00000000024d6206 (/usr/bin/cc+0x24d6206)
#20 0x00000000024ca8e3 (/usr/bin/cc+0x24ca8e3)
#21 0x00000000024ca913 (/usr/bin/cc+0x24ca913)
#22 0x00000000024ca913 (/usr/bin/cc+0x24ca913)
#23 0x00000000024ca913 (/usr/bin/cc+0x24ca913)
#24 0x00000000024ca913 (/usr/bin/cc+0x24ca913)
#25 0x00000000024ca913 (/usr/bin/cc+0x24ca913)
#26 0x00000000024c9067 (/usr/bin/cc+0x24c9067)
#27 0x0000000002f59624 (/usr/bin/cc+0x2f59624)
#28 0x0000000002f56c66 (/usr/bin/cc+0x2f56c66)
#29 0x000000000342f9f4 (/usr/bin/cc+0x342f9f4)
#30 0x0000000002e975df (/usr/bin/cc+0x2e975df)
#31 0x0000000002e20d6f (/usr/bin/cc+0x2e20d6f)
#32 0x0000000002f50aab (/usr/bin/cc+0x2f50aab)
#33 0x0000000002475311 (/usr/bin/cc+0x2475311)
#34 0x0000000002482922 (/usr/bin/cc+0x2482922)
#35 0x0000000002ceac67 (/usr/bin/cc+0x2ceac67)
#36 0x0000000004ef97f4 (/usr/bin/cc+0x4ef97f4)
#37 0x0000000002cea86c (/usr/bin/cc+0x2cea86c)
#38 0x0000000002cbb441 (/usr/bin/cc+0x2cbb441)
#39 0x0000000002cbb8ff (/usr/bin/cc+0x2cbb8ff)
#40 0x0000000002ccfa4c (/usr/bin/cc+0x2ccfa4c)
cc: error: clang frontend command failed with exit code 134 (use -v to see invocation)
FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303)
Target: x86_64-unknown-freebsd14.0
Thread model: posix
InstalledDir: /usr/bin
cc: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
cc: note: diagnostic msg: /tmp/fastcluster_python-e5d6c6.cpp
cc: note: diagnostic msg: /tmp/fastcluster_python-e5d6c6.sh
cc: note: diagnostic msg:
********************
error: command 'cc' failed with exit status 134
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-fastcluster