[package - main-riscv64-default][biology/ncbi-cxx-toolkit] Failed for ncbi-cxx-toolkit-25.2.0 in build
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Date: Tue, 16 Nov 2021 17:49:58 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy7.nyi.freebsd.org/data/main-riscv64-default/p5718aa5f2a8f_sce9676de86/logs/ncbi-cxx-toolkit-25.2.0.log
Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=main-riscv64-default&build=p5718aa5f2a8f_sce9676de86
Log:
=>> Building biology/ncbi-cxx-toolkit
build started at Tue Nov 16 17:47:04 UTC 2021
port directory: /usr/ports/biology/ncbi-cxx-toolkit
package name: ncbi-cxx-toolkit-25.2.0
building for: FreeBSD main-riscv64-default-job-13 14.0-CURRENT FreeBSD 14.0-CURRENT 1400041 riscv
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400008
Jail OSVERSION: 1400041
Job Id: 13
!!! Jail is newer than host. (Jail: 1400041, Host: 1400008) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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=======================<phase: check-sanity >============================
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ncbi-cxx-toolkit-25.2.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5.pkg
[main-riscv64-default-job-13] Installing pkg-1.17.5...
[main-riscv64-default-job-13] Extracting pkg-1.17.5: .......... done
===> ncbi-cxx-toolkit-25.2.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-cxx-toolkit-25.2.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-25.2.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-25.2.0 for building
<snip>
disabled: UUID FUSE LIBUNWIND LIBDW BACKWARD_CPP LocalZ LocalBZ2 LZO ZSTD LocalPCRE GMP GCRYPT NETTLE GNUTLS CURL Sybase DBLib BerkeleyDB BerkeleyDB++ ODBC PYTHON25 PYTHON26 PYTHON27 PYTHON3 Boost.Chrono Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.Serialization Boost.Spirit Boost.System Boost.Test Boost.Test.Included Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB NGS OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF GIF UNGIF GL2PS FreeType FTGL MIMETIC GSOAP AVRO Cereal SASL2 MONGODB MONGODB3 LEVELDB GMOCK LAPACK LIBUV LIBSSH2 CASSANDRA NGHTTP2 H2O INFLUXDB LIBXLSXWRITER PROTOBUF GRPC MSGSL AWS_SDK HIREDIS APACHE_ARROW LIBRDKAFKA CPPKAFKA
PROJECTS:
enabled: cgi serial objects dbapi app ctools algo
disabled: local_lbsm connext ncbi_crypt bdb gui gbench
Tools / flags / paths: /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/Makefile.mk
Configuration header: /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/inc/ncbiconf_unix.h
To build everything: cd /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build && /usr/local/bin/gmake all_r
or simply run /usr/local/bin/gmake in the current directory
******* CONFIGURATION SUCCESSFUL *******
===========================================================================
=======================<phase: build >============================
===> Building for ncbi-cxx-toolkit-25.2.0
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0'
if test -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/Makefile.flat; then \
cd /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build && gmake -f Makefile.flat; \
elif test -s ""; then \
cd /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build && gmake -w all_p; \
else \
cd /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build && gmake -w all_r; \
fi
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build'
Build session ID: 8c9c7998-4705-11ec-a5a5-a5a5a5a5a5a5
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/gui/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/gui/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/gui/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64 gui/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/gui/Makefile
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/internal/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/internal/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/internal/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64 internal/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/internal/Makefile
/usr/local/bin/gmake -C corelib -w all_r || exit 5
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
/usr/local/bin/gmake[5] (Makefile.precompile): Nothing to be done for `all'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib TMPL=corelib -w export-headers
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib TMPL=test_mt -w export-headers
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
gmake[5]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
NOTE: skipping project "test_boost" due to unmet requirements
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib TMPL=corelib -w all
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_os_unix.cpp:35:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/include/corelib/ncbifile.hpp:53:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/include/corelib/ncbi_system.hpp:389:9: error: reference to 'bitset' is ambiguous
bitset<32> f01_ECX_;
^
/usr/include/sys/_bitset.h:64:15: note: candidate found by name lookup is 'bitset'
BITSET_DEFINE(bitset, 1);
^
/usr/include/c++/v1/bitset:667:28: note: candidate found by name lookup is 'std::bitset'
class _LIBCPP_TEMPLATE_VIS bitset
^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_os_unix.cpp:35:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/include/corelib/ncbifile.hpp:53:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/include/corelib/ncbi_system.hpp:390:9: error: reference to 'bitset' is ambiguous
bitset<32> f01_EDX_;
^
/usr/include/sys/_bitset.h:64:15: note: candidate found by name lookup is 'bitset'
BITSET_DEFINE(bitset, 1);
^
/usr/include/c++/v1/bitset:667:28: note: candidate found by name lookup is 'std::bitset'
class _LIBCPP_TEMPLATE_VIS bitset
^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_os_unix.cpp:35:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/include/corelib/ncbifile.hpp:53:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/include/corelib/ncbi_system.hpp:391:9: error: reference to 'bitset' is ambiguous
bitset<32> f07_EBX_;
^
/usr/include/sys/_bitset.h:64:15: note: candidate found by name lookup is 'bitset'
BITSET_DEFINE(bitset, 1);
^
/usr/include/c++/v1/bitset:667:28: note: candidate found by name lookup is 'std::bitset'
class _LIBCPP_TEMPLATE_VIS bitset
^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_os_unix.cpp:35:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/include/corelib/ncbifile.hpp:53:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/include/corelib/ncbi_system.hpp:392:9: error: reference to 'bitset' is ambiguous
bitset<32> f07_ECX_;
^
/usr/include/sys/_bitset.h:64:15: note: candidate found by name lookup is 'bitset'
BITSET_DEFINE(bitset, 1);
^
/usr/include/c++/v1/bitset:667:28: note: candidate found by name lookup is 'std::bitset'
class _LIBCPP_TEMPLATE_VIS bitset
^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_os_unix.cpp:35:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/include/corelib/ncbifile.hpp:53:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/include/corelib/ncbi_system.hpp:393:9: error: reference to 'bitset' is ambiguous
bitset<32> f81_ECX_;
^
/usr/include/sys/_bitset.h:64:15: note: candidate found by name lookup is 'bitset'
BITSET_DEFINE(bitset, 1);
^
/usr/include/c++/v1/bitset:667:28: note: candidate found by name lookup is 'std::bitset'
class _LIBCPP_TEMPLATE_VIS bitset
^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_os_unix.cpp:35:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/include/corelib/ncbifile.hpp:53:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/include/corelib/ncbi_system.hpp:394:9: error: reference to 'bitset' is ambiguous
bitset<32> f81_EDX_;
^
/usr/include/sys/_bitset.h:64:15: note: candidate found by name lookup is 'bitset'
BITSET_DEFINE(bitset, 1);
^
/usr/include/c++/v1/bitset:667:28: note: candidate found by name lookup is 'std::bitset'
class _LIBCPP_TEMPLATE_VIS bitset
^
6 errors generated.
gmake[5]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/Makefile.rules:88: ncbi_os_unix.o] Error 1
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_pool_balancer.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_dbsvcmapper.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_fast.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/request_status.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_message.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/guard.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_cookies.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_url.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbierror.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_toolkit.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/perf_log.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_autoinit.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/interprocess_lock.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/resource_info.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_strings.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/expr.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/request_control.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/request_ctx.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/version.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/syslog.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/stream_utils.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/rwstreambuf.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/plugin_manager_store.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/plugin_manager.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/obj_store.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbitime.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbithr.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbistre.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbistr.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbireg.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbiobj.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbimtx.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbimempool.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbifile.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbiexpt.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbiexec.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbienv.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbidll.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbidiag_p.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbidiag.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbidbg.cpp.
Updating dependency information for ncbicfg.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbiatomic.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbiargs.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbiapp.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_system.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_stack.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_signal.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_safe_static.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_process.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_param.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_config.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/metareg.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/env_reg.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ddumpable.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/blob_storage.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_os_unix.cpp.
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/include -DNCBI_BUILD_SESSION_ID=8c9c7998-4705-11ec-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
FAILED: src/corelib/Makefile.corelib.lib
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
/bin/rm -f libxncbi.so libxncbi.so .xncbi.dep .libxncbi.so.stamp
/bin/rm -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/lib/libxncbi.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/status/.xncbi.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/build-system/Makefile.meta_l:286: all_l.real] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build/corelib'
gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0/Clang1201-ReleaseMTDLL64/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--25_2_0'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ncbi-cxx-toolkit