[package - main-arm64-default][biology/ncbi-cxx-toolkit] Failed for ncbi-cxx-toolkit-22.0.0 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Sat, 26 Jun 2021 13:03:09 GMT
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri_at_FreeBSD.org
Log URL:        http://ampere2.nyi.freebsd.org/data/main-arm64-default/pc9afda5a14a3_sb43d600c83/logs/ncbi-cxx-toolkit-22.0.0.log
Build URL:      http://ampere2.nyi.freebsd.org/build.html?mastername=main-arm64-default&build=pc9afda5a14a3_sb43d600c83
Log:

=>> Building biology/ncbi-cxx-toolkit
build started at Sat Jun 26 12:33:09 UTC 2021
port directory: /usr/ports/biology/ncbi-cxx-toolkit
package name: ncbi-cxx-toolkit-22.0.0
building for: FreeBSD main-arm64-default-job-13 14.0-CURRENT FreeBSD 14.0-CURRENT 1400024 arm64
maintained by: yuri_at_FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1400008
Jail OSVERSION: 1400024
Job Id: 13




!!! Jail is newer than host. (Jail: 1400024, Host: 1400008) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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=======================<phase: check-sanity   >============================
===>  License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ncbi-cxx-toolkit-22.0.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.16.3.txz
[main-arm64-default-job-13] Installing pkg-1.16.3...
[main-arm64-default-job-13] Extracting pkg-1.16.3: .......... done
===>   ncbi-cxx-toolkit-22.0.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of ncbi-cxx-toolkit-22.0.0
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-22.0.0 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-22.0.0 for building
=> SHA256 Checksum OK for ncbi_cxx--22_0_0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-22.0.0 for building
===>  Extracting for ncbi-cxx-toolkit-22.0.0
=> SHA256 Checksum OK for ncbi_cxx--22_0_0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for ncbi-cxx-toolkit-22.0.0
===>  Applying FreeBSD patches for ncbi-cxx-toolkit-22.0.0 from /usr/ports/biology/ncbi-cxx-toolkit/files
===========================================================================
=======================<phase: build-depends  >============================
===>   ncbi-cxx-toolkit-22.0.0 depends on package: gmake>=4.3 - not found
===>   Installing existing package /packages/All/gmake-4.3_2.txz
[main-arm64-default-job-13] Installing gmake-4.3_2...
[main-arm64-default-job-13] `-- Installing gettext-runtime-0.21...
[main-arm64-default-job-13] |   `-- Installing indexinfo-0.3.1...
[main-arm64-default-job-13] |   `-- Extracting indexinfo-0.3.1: .... done
[main-arm64-default-job-13] `-- Extracting gettext-runtime-0.21: .......... done
[main-arm64-default-job-13] Extracting gmake-4.3_2: .......... done
===>   ncbi-cxx-toolkit-22.0.0 depends on package: gmake>=4.3 - found
<snip>
    virtual const char* GetErrCodeString() const
                        ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/netservice_api_expt.hpp:57:25: note: overridden virtual function is here
    virtual const char* GetErrCodeString(void) const
                        ^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp:34:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/netcache_api.hpp:42:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/netcache_api_expt.hpp:109:25: warning: 'GetErrCodeString' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
    virtual const char* GetErrCodeString() const
                        ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/netcache_api_expt.hpp:78:25: note: overridden virtual function is here
    virtual const char* GetErrCodeString() const
                        ^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp:34:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/netcache_api.hpp:674:5: warning: 'auto_ptr<std::istream>' is deprecated [-Wdeprecated-declarations]
    auto_ptr<CNcbiIstream> m_IStream;
    ^
/usr/include/c++/v1/memory:1155:28: note: 'auto_ptr<std::istream>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:1026:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:1015:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp:34:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/netcache_api.hpp:675:5: warning: 'auto_ptr<std::ostream>' is deprecated [-Wdeprecated-declarations]
    auto_ptr<CNcbiOstream> m_OStream;
    ^
/usr/include/c++/v1/memory:1155:28: note: 'auto_ptr<std::ostream>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:1026:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:1015:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp:67:5: warning: 'auto_ptr<ncbi::CArgDescriptions>' is deprecated [-Wdeprecated-declarations]
    auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
    ^
/usr/include/c++/v1/memory:1155:28: note: 'auto_ptr<ncbi::CArgDescriptions>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:1026:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:1015:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp:108:5: warning: 'auto_ptr<ncbi::IBlobStorage>' is deprecated [-Wdeprecated-declarations]
    auto_ptr<IBlobStorage> storage1(new CBlobStorage_NetCache(nc_api));
    ^
/usr/include/c++/v1/memory:1155:28: note: 'auto_ptr<ncbi::IBlobStorage>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:1026:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:1015:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp:109:5: warning: 'auto_ptr<ncbi::IBlobStorage>' is deprecated [-Wdeprecated-declarations]
    auto_ptr<IBlobStorage> storage2(new CBlobStorage_NetCache(nc_api));
    ^
/usr/include/c++/v1/memory:1155:28: note: 'auto_ptr<ncbi::IBlobStorage>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:1026:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:1015:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
13 warnings generated.
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp.
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing   -Wno-deprecated-register -fPIC   -DNDEBUG   -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include  /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp -o test_nsstorage.o 
/usr/bin/c++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O test_nsstorage.o -Wl,-rpath-link,/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib -lxconnserv -lxconnect -lxutil -lxncbi -lz -lm -pthread -o test_nsstorage
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/scripts/common/impl/if_diff.sh /bin/ln -f test_nsstorage /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/bin
/bin/ln -f test_nsstorage /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/bin/test_nsstorage
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'.  Stop.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
NOTE:  skipping project "test_ic_client" due to unmet requirements
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'.  Stop.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
NOTE:  skipping project "test_netcache_api" due to unmet requirements
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'.  Stop.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
NOTE:  skipping project "test_json_over_uttp" due to unmet requirements
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test TMPL=test_compound_id -w -j2 --jobserver-auth=17,18 all
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_compound_id.cpp:36:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/compound_id.hpp:99:25: warning: 'GetErrCodeString' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
    virtual const char* GetErrCodeString() const;
                        ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/corelib/ncbiexpt.hpp:852:25: note: overridden virtual function is here
    virtual const char* GetErrCodeString(void) const;
                        ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_compound_id.cpp:211:5: warning: 'auto_ptr<ncbi::CArgDescriptions>' is deprecated [-Wdeprecated-declarations]
    auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
    ^
/usr/include/c++/v1/memory:1155:28: note: 'auto_ptr<ncbi::CArgDescriptions>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:1026:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:1015:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
2 warnings generated.
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_compound_id.cpp.
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing   -Wno-deprecated-register -fPIC    -DNDEBUG   -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include  /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_compound_id.cpp -o test_compound_id.o 
/usr/bin/c++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O test_compound_id.o -Wl,-rpath-link,/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib -lxconnserv -lxthrserv -lxconnect -lxutil -lxncbi -lz -lm -pthread -o test_compound_id
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/scripts/common/impl/if_diff.sh /bin/ln -f test_compound_id /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/bin
/bin/ln -f test_compound_id /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/bin/test_compound_id
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'.  Stop.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
NOTE:  skipping project "test_netservice_params" due to unmet requirements
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services'
/usr/local/bin/gmake -C ext -w -j2 --jobserver-auth=11,12  all_r  ||  exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect'
gmake[4]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/ext'
/usr/local/bin/gmake -C test -w -j2 --jobserver-auth=11,12  all_r  ||  exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect'
gmake[4]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/test TMPL=test_ncbi_buffer -w -j2 --jobserver-auth=15,16 all
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
ld: error: /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib/libconnect.so: undefined reference to NCBI_SwapPointers [--no-allow-shlib-undefined]
c++: error: linker command failed with exit code 1 (use -v to see invocation)
gmake[6]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/Makefile.app:156: test_ncbi_buffer] Error 1
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/test/test_ncbi_buffer.c.
/usr/bin/cc  -std=gnu11 -fgnu89-inline -c  -Wall -Wno-format-y2k  -pthread -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -Wno-deprecated-register -fPIC   -DNDEBUG   -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include  /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/test/test_ncbi_buffer.c -o test_ncbi_buffer.o 
/usr/bin/c++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O test_ncbi_buffer.o -Wl,-rpath-link,/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib -lconnect -lz -lm -pthread -o test_ncbi_buffer
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
FAILED: src/connect/test/Makefile.test_ncbi_buffer.app
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
/bin/rm -f test_ncbi_buffer .test_ncbi_buffer.stamp
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[5]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/build-system/Makefile.meta_l:319: all.nonusr] Error 2
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/build-system/Makefile.meta_l:276: all_l.real] Error 2
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect'
gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/ncbi-cxx-toolkit
Received on Sat Jun 26 2021 - 13:03:09 UTC

Original text of this message