[package - 130amd64-quarterly][biology/cytoscape] Failed for cytoscape-3.6.1 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Sun, 20 Jun 2021 01:11:52 GMT
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri_at_FreeBSD.org
Log URL:        http://beefy14.nyi.freebsd.org/data/130amd64-quarterly/3ce47d16f7eb/logs/cytoscape-3.6.1.log
Build URL:      http://beefy14.nyi.freebsd.org/build.html?mastername=130amd64-quarterly&build=3ce47d16f7eb
Log:

=>> Building biology/cytoscape
build started at Sun Jun 20 01:10:58 UTC 2021
port directory: /usr/ports/biology/cytoscape
package name: cytoscape-3.6.1
building for: FreeBSD 130amd64-quarterly-job-01 13.0-RELEASE-p2 FreeBSD 13.0-RELEASE-p2 amd64
maintained by: yuri_at_FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1400008
Jail OSVERSION: 1300139
Job Id: 01

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1300139
UNAME_v=FreeBSD 13.0-RELEASE-p2
UNAME_r=13.0-RELEASE-p2
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-8-gaf08dbda
MASTERMNT=/usr/local/poudriere/data/.m/130amd64-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/130amd64-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=130amd64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/130amd64-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri_at_FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work  HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work  HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
JAVASHAREDIR="share/java"  JAVAJARDIR="share/java/classes" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cytoscape"  EXAMPLESDIR="share/examples/cytoscape"  DATADIR="share/cytoscape"  WWWDIR="www/cytoscape"  ETCDIR="etc/cytoscape"
--End PLIST_SUB--

--SUB_LIST--
JAVASHAREDIR="/usr/local/share/java"  JAVAJARDIR="/usr/local/share/java/classes"  JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/cytoscape DOCSDIR=/usr/local/share/doc/cytoscape EXAMPLESDIR=/usr/local/share/examples/cytoscape  WWWDIR=/usr/local/www/cytoscape ETCDIR=/usr/local/etc/cytoscape
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git_at_github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.1 (git_at_github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git_at_github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=amd64
OPSYS=FreeBSD
_OSRELEASE=13.0-RELEASE-p2
OSREL=13.0
OSVERSION=1300139
PYTHONBASE=/usr/local
HAVE_COMPAT_IA32_KERN=YES
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.16.3.txz
[130amd64-quarterly-job-01] Installing pkg-1.16.3...
[130amd64-quarterly-job-01] Extracting pkg-1.16.3: .......... done
===>   cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of cytoscape-3.6.1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
=> SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
===>  Extracting for cytoscape-3.6.1
=> SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for cytoscape-3.6.1
===========================================================================
=======================<phase: build-depends  >============================
===>   cytoscape-3.6.1 depends on executable: mvn - not found
===>   Installing existing package /packages/All/maven-3.8.1.txz
[130amd64-quarterly-job-01] Installing maven-3.8.1...
[130amd64-quarterly-job-01] `-- Installing maven-wrapper-1_2...
<snip>
[INFO] Writing OBR metadata
[INFO] 
[INFO] ------------------------------------------------------------------------
[INFO] Skipping Cytoscape GUI-Distribution Integration Test (integration-test)
[INFO] This project has been banned from the build due to previous failures.
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] ----------------< org.cytoscape.distribution:features >-----------------
[INFO] Building Cytoscape Feature Repository 3.6.1                     [27/117]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) _at_ features ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] 
[INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources _at_ features >>>
[INFO] 
[INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) _at_ features ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] 
[INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources _at_ features <<<
[INFO] 
[INFO] 
[INFO] --- maven-source-plugin:2.4:jar (attach-sources) _at_ features ---
[INFO] 
[INFO] --- build-helper-maven-plugin:1.7:attach-artifact (attach-artifacts) _at_ features ---
[INFO] 
[INFO] --- maven-install-plugin:2.4:install (default-install) _at_ features ---
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/features/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/features/3.6.1/features-3.6.1.pom
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/features/target/features.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/features/3.6.1/features-3.6.1-features.xml
[INFO] 
[INFO] ----------------< org.cytoscape.distribution:cytoscape >----------------
[INFO] Building Cytoscape Karaf Distribution 3.6.1                     [28/117]
[INFO] --------------------------------[ pom ]---------------------------------
[WARNING] The POM for jline:jline:jar:2.12 is missing, no dependency information available
[WARNING] The POM for org.slf4j:slf4j-api:jar:1.6.6 is missing, no dependency information available
[WARNING] The POM for org.eclipse:org.eclipse.osgi:jar:3.8.2.v20130124-134944 is missing, no dependency information available
[WARNING] The POM for org.jledit:core:jar:0.2.1 is missing, no dependency information available
[INFO] 
[INFO] ------------------------------------------------------------------------
[INFO] Skipping Distribution
[INFO] This project has been banned from the build due to previous failures.
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] -----------------------< org.cytoscape:project >------------------------
[INFO] Building Cytoscape Project POM 3.6.1                            [29/117]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-install-plugin:2.4:install (default-install) _at_ project ---
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/project/3.6.1/project-3.6.1.pom
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for Cytoscape Project POM 3.6.1:
[INFO] 
[INFO] Basic Cytoscape POM Configuration .................. SUCCESS [  0.209 s]
[INFO] Cytoscape API Parent Project POM ................... SUCCESS [  2.107 s]
[INFO] Cytoscape Documentation Taglets .................... FAILURE [  0.027 s]
[INFO] Cytoscape Event API (event-api) .................... FAILURE [  0.013 s]
[INFO] Cytoscape Model API (model-api) .................... SKIPPED
[INFO] Cytoscape Service API (service-api) ................ FAILURE [  0.005 s]
[INFO] Cytoscape View Model API (viewmodel-api) ........... SKIPPED
[INFO] Cytoscape CI API (ci-api) .......................... SUCCESS [  1.204 s]
[INFO] Cytoscape Work API (work-api) ...................... FAILURE [  0.006 s]
[INFO] Cytoscape Presentation API (presentation-api) ...... SKIPPED
[INFO] Cytoscape Application API (application-api) ........ SKIPPED
[INFO] Cytoscape Property API (property-api) .............. SKIPPED
[INFO] Cytoscape VizMap API (vizmap-api) .................. SKIPPED
[INFO] Cytoscape Session API (session-api) ................ SKIPPED
[INFO] Cytoscape Filter API (filter-api) .................. SKIPPED
[INFO] Cytoscape IO API (io-api) .......................... SKIPPED
[INFO] Cytoscape Core Task API (core-task-api) ............ SKIPPED
[INFO] Cytoscape Equations API (equations-api) ............ SKIPPED
[INFO] Cytoscape Layout API (layout-api) .................. SKIPPED
[INFO] Cytoscape Groups API (group-api) ................... SKIPPED
[INFO] Cytoscape Groups API (jobs-api) .................... SKIPPED
[INFO] Cytoscape Webservice API (webservice-api) .......... SKIPPED
[INFO] Cytoscape Data Source API (datasource-api) ......... SKIPPED
[INFO] Cytoscape Command Executor API (command-executor-api) SKIPPED
[INFO] Cytoscape App API (app-api) ........................ SKIPPED
[INFO] Cytoscape Work Swing API (work-swing-api) .......... SKIPPED
[INFO] Cytoscape Swing Application API (swing-application-api) SKIPPED
[INFO] Cytoscape VizMap GUI API (vizmap-gui-api) .......... SKIPPED
[INFO] Cytoscape Swing Utility API (swing-util-api) ....... FAILURE [  0.006 s]
[INFO] Cytoscape Webservice Swing API (webservice-swing-api) SKIPPED
[INFO] Cytoscape Swing App API (swing-app-api) ............ SKIPPED
[INFO] Cytoscape Util API (util-api) ...................... SKIPPED
[INFO] Cytoscape API (api-bundle) ......................... SKIPPED
[INFO] Cytoscape Implementation Parent Project POM ........ SKIPPED
[INFO] Cytoscape Equations Impl (equations-impl) .......... SKIPPED
[INFO] Cytoscape Model Impl Parent (model-impl-parent) .... SKIPPED
[INFO] Cytoscape Model Impl (model-impl) .................. SKIPPED
[INFO] Cytoscape Command Executor Impl (command-executor-impl) SKIPPED
[INFO] Cytoscape Ding Impl Parent (ding-impl) ............. SKIPPED
[INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SKIPPED
[INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SKIPPED
[INFO] Cytoscape View Model Impl (viewmodel-impl) ......... SKIPPED
[INFO] Cytoscape Groups Impl (group-impl) ................. SKIPPED
[INFO] Cytoscape Event Impl Parent (event-impl-parent) .... SKIPPED
[INFO] Cytoscape Event Impl (event-impl) .................. SKIPPED
[INFO] Cytoscape Filters Impl (filter-impl) ............... SKIPPED
[INFO] Cytoscape Filters 2 Impl (filter2-impl) ............ SKIPPED
[INFO] Cytoscape IO Impl Parent (io-impl-parent) .......... SKIPPED
[INFO] Cytoscape IO Impl (io-impl) ........................ SKIPPED
[INFO] Cytoscape Layout Impl (layout-impl) ................ SKIPPED
[INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SKIPPED
[INFO] Cytoscape Editor Impl (editor-impl) ................ SKIPPED
[INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SKIPPED
[INFO] Cytoscape GraphML Impl (graphml-impl) .............. SKIPPED
[INFO] Cytoscape IO Impl Performance (io-impl-performance)  SKIPPED
[INFO] Cytoscape Jobs Impl (jobs-impl) .................... SKIPPED
[INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SKIPPED
[INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) .. SKIPPED
[INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl)  SKIPPED
[INFO] Cytoscape Linkout Impl (linkout-impl) .............. SKIPPED
[INFO] Cytoscape Log Swing Impl (log-swing-impl) .......... SKIPPED
[INFO] Cytoscape Manual Layout Impl (manual-layout-impl) .. SKIPPED
[INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SKIPPED
[INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SKIPPED
[INFO] Cytoscape App Impl (app-impl) ...................... SKIPPED
[INFO] Cytoscape Presentation Impl (presentation-impl) .... SKIPPED
[INFO] Cytoscape Property Impl (property-impl) ............ SKIPPED
[INFO] Cytoscape Search Impl (search-impl) ................ SKIPPED
[INFO] Cytoscape Session Impl (session-impl) .............. SKIPPED
[INFO] Cytoscape Swing Utility Impl (swing-util-impl) ..... SKIPPED
[INFO] Cytoscape Swing Application Impl (swing-application-impl) SKIPPED
[INFO] Cytoscape Table Browser Impl (table-browser-impl) .. SKIPPED
[INFO] Cytoscape Table Import Impl (table-import-impl) .... SKIPPED
[INFO] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) SKIPPED
[INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ........ SKIPPED
[INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) .. SKIPPED
[INFO] Cytoscape VizMap Impl (vizmap-impl) ................ SKIPPED
[INFO] Cytoscape Webservice Impl (webservice-impl) ........ SKIPPED
[INFO] org.cytoscape.work-headless-impl ................... SKIPPED
[INFO] org.cytoscape.work-impl ............................ SKIPPED
[INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SKIPPED
[INFO] Cytoscape Work Swing Impl (work-swing-impl) ........ SKIPPED
[INFO] Cytoscape Application Impl (application-impl) ...... SKIPPED
[INFO] Cytoscape Datasource Impl (datasource-impl) ........ SKIPPED
[INFO] Cytoscape Support Parent Project POM ............... SUCCESS [  0.005 s]
[INFO] Cytoscape Launch Framework ......................... SUCCESS [  0.004 s]
[INFO] CommandLine Provider ............................... SUCCESS [  0.190 s]
[INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SKIPPED
[INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) .... SKIPPED
[INFO] Cytoscape Scripting Impl (scripting-impl) .......... SKIPPED
[INFO] Cytoscape Core Task Impl (core-task-impl) .......... SKIPPED
[INFO] Cytoscape Headless Application Impl (headless-application-impl) SKIPPED
[INFO] org.cytoscape.cy-commons-cli ....................... FAILURE [  0.003 s]
[INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SKIPPED
[INFO] Cytoscape 3 App Archetypes Parent .................. SUCCESS [  0.080 s]
[INFO] Cytoscape 3 Archetype - Creates an App providing public API SUCCESS [  0.185 s]
[INFO] Cytoscape 3 Archetype - Creates an App with a Task . SUCCESS [  0.018 s]
[INFO] Cytoscape 3 Archetype - Creates a CyAction (menu item) for desktop application SUCCESS [  0.019 s]
[INFO] Cytoscape 3 Archetype - Creates a Meta-App to install multiple related apps SUCCESS [  0.017 s]
[INFO] org.cytoscape.integration-test-support ............. FAILURE [  0.014 s]
[INFO] Launcher ........................................... SUCCESS [  0.657 s]
[INFO] StartLevel Assembly ................................ SUCCESS [  0.022 s]
[INFO] Tasks for Testing .................................. SKIPPED
[INFO] Cytoscape Desktop Application Distribution ......... SUCCESS [  0.005 s]
[INFO] Cytoscape Third-Party Dependencies (third-party) ... FAILURE [  0.026 s]
[INFO] SplashScreen Launcher .............................. SUCCESS [  1.255 s]
[INFO] Cytoscape Launcher ................................. FAILURE [  0.008 s]
[INFO] Splash Updater ..................................... SKIPPED
[INFO] Cytoscape Command Line Provider Implementation ..... SKIPPED
[INFO] Cytoscape Diagnostics .............................. SKIPPED
[INFO] Cytoscape Branding ................................. SUCCESS [  0.182 s]
[INFO] Cytoscape Application Implementation Metadata ...... SUCCESS [  0.107 s]
[INFO] Cytoscape GUI-Distribution Integration Test (integration-test) SKIPPED
[INFO] Cytoscape Feature Repository ....................... SUCCESS [  0.034 s]
[INFO] Cytoscape Karaf Distribution ....................... FAILURE [  0.073 s]
[INFO] Distribution ....................................... SKIPPED
[INFO] Cytoscape Project POM .............................. SUCCESS [  0.017 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  7.684 s
[INFO] Finished at: 2021-06-20T01:11:45Z
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project taglets: Could not resolve dependencies for project org.cytoscape:taglets:jar:3.6.1: Cannot access maven-default-http-blocker (http://0.0.0.0/) in offline mode and the artifact org.mockito:mockito-all:jar:1.8.1 has not been downloaded from it before. -> [Help 1]
[ERROR] Failed to execute goal on project event-api: Could not resolve dependencies for project org.cytoscape:event-api:bundle:3.6.1: Cannot access maven-default-http-blocker (http://0.0.0.0/) in offline mode and the artifact org.mockito:mockito-all:jar:1.10.19 has not been downloaded from it before. -> [Help 1]
[ERROR] Failed to execute goal on project service-api: Could not resolve dependencies for project org.cytoscape:service-api:bundle:3.6.1: Cannot access maven-default-http-blocker (http://0.0.0.0/) in offline mode and the artifact org.mockito:mockito-all:jar:1.10.19 has not been downloaded from it before. -> [Help 1]
[ERROR] Failed to execute goal on project work-api: Could not resolve dependencies for project org.cytoscape:work-api:bundle:3.6.1: Cannot access maven-default-http-blocker (http://0.0.0.0/) in offline mode and the artifact org.mockito:mockito-all:jar:1.10.19 has not been downloaded from it before. -> [Help 1]
[ERROR] Failed to execute goal on project swing-util-api: Could not resolve dependencies for project org.cytoscape:swing-util-api:bundle:3.6.1: Cannot access maven-default-http-blocker (http://0.0.0.0/) in offline mode and the artifact org.mockito:mockito-all:jar:1.10.19 has not been downloaded from it before. -> [Help 1]
[ERROR] Failed to execute goal on project cy-commons-cli: Could not resolve dependencies for project org.cytoscape:cy-commons-cli:bundle:3.6.1: Cannot access maven-default-http-blocker (http://0.0.0.0/) in offline mode and the artifact org.apache.commons:com.springsource.org.apache.commons.lang:jar:2.4.0 has not been downloaded from it before. -> [Help 1]
[ERROR] Failed to execute goal on project integration-test-support: Could not resolve dependencies for project org.cytoscape:integration-test-support:bundle:3.6.1: Cannot access maven-default-http-blocker (http://0.0.0.0/) in offline mode and the artifact org.easymock:easymock:jar:3.0 has not been downloaded from it before. -> [Help 1]
[ERROR] Failed to execute goal on project third-party: Could not resolve dependencies for project org.cytoscape.distribution:third-party:bundle:3.6.1: The following artifacts could not be resolved: cytoscape-temp:l2fprod-common-sheet:jar:7.3, com.lowagie:itext:jar:2.0.8, cytoscape-temp:org.swinglabs.swingx:jar:1.6.1, cytoscape-temp:l2fprod-common-shared:jar:7.3, cytoscape-temp:l2fprod-common-fontchooser:jar:7.3, net.sf.opencsv:opencsv:jar:2.1, cytoscape-sun:jhall:jar:1.0, cytoscape-temp:parallelcolt:jar:0.9.4, org.freehep:freehep-graphicsio:jar:2.4, org.freehep:freehep-graphics2d:jar:2.4, org.freehep:freehep-graphicsbase:jar:2.4, junit:junit:jar:4.10, org.freehep:freehep-graphicsio-ps:jar:2.4, org.freehep:freehep-graphicsio-pdf:jar:2.4, org.freehep:freehep-graphicsio-svg:jar:2.4, org.freehep:freehep-graphicsio-java:jar:2.4, cytoscape-temp:jfree-jfreechart:jar:1.0.13, cytoscape-temp:jfree-jcommon:jar:1.0.15, cytoscape-temp:violinstrings:jar:1.0.2, cytoscape-temp:jigsaw:jar:2.2.6, cyto
 scape-temp:stax2-api:jar:3.0.1, cytoscape-temp:staxmate:jar:2.0.0, cytoscape-temp:woodstox-core-lgpl:jar:4.0.5, cytoscape-temp:xstream:jar:1.3.1, cytoscape-temp:collections-generic:jar:4.01, com.google.guava:guava:jar:22.0, psidev.psi.mi:psimitab:jar:1.7.9, psidev.psi.tools:xxindex:jar:0.11, psidev.psi.mi:psi25-xml:jar:1.7.10, com.fasterxml.jackson.core:jackson-core:jar:2.2.2, com.fasterxml.jackson.core:jackson-databind:jar:2.2.2, com.fasterxml.jackson.core:jackson-annotations:jar:2.2.2: Cannot access maven-default-http-blocker (http://0.0.0.0/) in offline mode and the artifact cytoscape-temp:l2fprod-common-sheet:jar:7.3 has not been downloaded from it before. -> [Help 1]
[ERROR] Failed to execute goal on project karaf-launcher: Could not resolve dependencies for project org.cytoscape.distribution:karaf-launcher:jar:3.6.1: Cannot access maven-default-http-blocker (http://0.0.0.0/) in offline mode and the artifact com.apple.developer:AppleJavaExtensions:jar:1.6 has not been downloaded from it before. -> [Help 1]
[ERROR] Failed to execute goal on project cytoscape: Could not resolve dependencies for project org.cytoscape.distribution:cytoscape:pom:3.6.1: Failed to collect dependencies at org.apache.karaf:apache-karaf:tar.gz:3.0.3 -> org.apache.karaf.features:framework:kar:3.0.3 -> org.ops4j.pax.logging:pax-logging-api:jar:1.8.1: Failed to read artifact descriptor for org.ops4j.pax.logging:pax-logging-api:jar:1.8.1: Cannot access maven-default-http-blocker (http://0.0.0.0/) in offline mode and the artifact org.sonatype.oss:oss-parent:pom:9 has not been downloaded from it before. -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <args> -rf :taglets
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/cytoscape
Received on Sun Jun 20 2021 - 01:11:52 UTC

Original text of this message