[package - 114i386-default][math/py-pdal] Failed for py38-pdal-2.3.5 in build
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Date: Thu, 10 Jun 2021 01:49:21 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: lbartoletti@FreeBSD.org
Log URL: http://beefy10.nyi.freebsd.org/data/114i386-default/306ef64cac3a/logs/py38-pdal-2.3.5.log
Build URL: http://beefy10.nyi.freebsd.org/build.html?mastername=114i386-default&build=306ef64cac3a
Log:
=>> Building math/py-pdal
build started at Thu Jun 10 01:48:00 UTC 2021
port directory: /usr/ports/math/py-pdal
package name: py38-pdal-2.3.5
building for: FreeBSD 114i386-default-job-01 11.4-RELEASE-p11 FreeBSD 11.4-RELEASE-p11 i386
maintained by: lbartoletti@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py38-pdal-2.3.5 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[114i386-default-job-01] Installing pkg-1.16.3...
[114i386-default-job-01] Extracting pkg-1.16.3: .......... done
===> py38-pdal-2.3.5 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py38-pdal-2.3.5
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py38-pdal-2.3.5 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py38-pdal-2.3.5 for building
=> SHA256 Checksum OK for PDAL-2.3.5.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py38-pdal-2.3.5 for building
===> Extracting for py38-pdal-2.3.5
=> SHA256 Checksum OK for PDAL-2.3.5.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py38-pdal-2.3.5
===========================================================================
=======================<phase: build-depends >============================
===> py38-pdal-2.3.5 depends on package: py38-numpy>=1.16,1<1.20,1 - not found
===> Installing existing package /packages/All/py38-numpy-1.16.6_1,1.txz
[114i386-default-job-01] Installing py38-numpy-1.16.6_1,1...
[114i386-default-job-01] `-- Installing gcc10-10.3.0...
[114i386-default-job-01] | `-- Installing binutils-2.33.1_4,1...
[114i386-default-job-01] | | `-- Installing gettext-runtime-0.21...
[114i386-default-job-01] | | `-- Installing indexinfo-0.3.1...
[114i386-default-job-01] | | `-- Extracting indexinfo-0.3.1: .... done
[114i386-default-job-01] | | `-- Extracting gettext-runtime-0.21: .......... done
[114i386-default-job-01] | `-- Extracting binutils-2.33.1_4,1: .......... done
[114i386-default-job-01] | `-- Installing gmp-6.2.1...
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[114i386-default-job-01] | | `-- Installing mpfr-4.1.0...
[114i386-default-job-01] | | `-- Extracting mpfr-4.1.0: .......... done
[114i386-default-job-01] | `-- Extracting mpc-1.2.0: ......... done
<snip>
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Looking for pthread.h
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-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/_skbuild/freebsd-11.4-RELEASE-p11-i386-3.8/cmake-build
[ 2% 25/36] Building CXX object CMakeFiles/pdal_io_numpy_test.dir/plang/Redirector.cpp.o
[ 5% 25/36] Building CXX object CMakeFiles/pdal_plugin_filter_python.dir/plang/Script.cpp.o
[ 8% 25/36] Generating CXX source libpdalpython.cxx
[ 11% 28/36] Building CXX object CMakeFiles/pdal_plugin_reader_numpy.dir/plang/Redirector.cpp.o
[ 13% 28/36] Building CXX object CMakeFiles/pdal_plugin_filter_python.dir/plang/Redirector.cpp.o
[ 16% 28/36] Building CXX object test/gtest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o
[ 19% 28/36] Building CXX object CMakeFiles/pdal_io_numpy_test.dir/plang/Script.cpp.o
[ 22% 28/36] Building CXX object CMakeFiles/pdal_filters_python_test.dir/plang/Redirector.cpp.o
[ 25% 28/36] Building CXX object CMakeFiles/pdal_plugin_reader_numpy.dir/plang/Script.cpp.o
[ 27% 28/36] Building CXX object CMakeFiles/pdal_filters_python_test.dir/plang/Script.cpp.o
[ 30% 28/36] Building CXX object CMakeFiles/pdal_plugin_reader_numpy.dir/plang/Environment.cpp.o
[ 33% 28/36] Building CXX object CMakeFiles/pdal_plugin_filter_python.dir/plang/Environment.cpp.o
[ 36% 28/36] Building CXX object CMakeFiles/pdal_io_numpy_test.dir/plang/Environment.cpp.o
[ 38% 28/36] Building CXX object CMakeFiles/pdal_filters_python_test.dir/plang/Environment.cpp.o
[ 41% 28/36] Building CXX object CMakeFiles/pdal_io_numpy_test.dir/plang/Invocation.cpp.o
[ 44% 28/36] Building CXX object CMakeFiles/pdal_filters_python_test.dir/plang/Invocation.cpp.o
[ 47% 28/36] Building CXX object CMakeFiles/pdal_plugin_filter_python.dir/plang/Invocation.cpp.o
[ 50% 28/36] Building CXX object CMakeFiles/pdal_plugin_reader_numpy.dir/plang/Invocation.cpp.o
[ 52% 28/36] Building CXX object CMakeFiles/pdal_filters_python_test.dir/test/Support.cpp.o
[ 55% 28/36] Building CXX object CMakeFiles/pdal_io_numpy_test.dir/test/Support.cpp.o
[ 58% 28/36] Building CXX object CMakeFiles/libpdalpython.dir/PyPipeline.cpp.o
In file included from /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/pdal/PyPipeline.cpp:42:
In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
[ 61% 28/36] Building CXX object CMakeFiles/pdal_plugin_reader_numpy.dir/io/NumpyReader.cpp.o
[ 63% 29/36] Linking CXX shared library libpdal_plugin_reader_numpy.so
[ 66% 29/36] Building CXX object CMakeFiles/pdal_io_numpy_test.dir/test/NumpyReaderTest.cpp.o
[ 69% 29/36] Building CXX object CMakeFiles/libpdalpython.dir/PyArray.cpp.o
In file included from /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/pdal/PyArray.cpp:35:
In file included from /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/pdal/./PyArray.hpp:37:
In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
[ 72% 29/36] Building CXX object CMakeFiles/libpdalpython.dir/libpdalpython.cxx.o
In file included from libpdalpython.cxx:633:
In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
libpdalpython.cxx:7032:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
0, /*tp_print*/
^
/usr/local/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
^
/usr/local/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
libpdalpython.cxx:7190:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
0, /*tp_print*/
^
/usr/local/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
^
/usr/local/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
3 warnings generated.
[ 75% 30/36] Linking CXX shared module libpdalpython.cpython-38.so
[ 77% 30/36] Building CXX object CMakeFiles/pdal_plugin_filter_python.dir/filters/PythonFilter.cpp.o
[ 80% 31/36] Linking CXX shared library libpdal_plugin_filter_python.so
[ 83% 31/36] Building CXX object CMakeFiles/pdal_filters_python_test.dir/test/PythonFilterTest.cpp.o
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/pdal/test/PythonFilterTest.cpp:1138:1: warning: 'InstantiateTestCase_P_IsDeprecated' is deprecated: INSTANTIATE_TEST_CASE_P is deprecated, please use INSTANTIATE_TEST_SUITE_P [-Wdeprecated-declarations]
INSTANTIATE_TEST_CASE_P(plugins, jsonWithProgrammable,
^
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/pdal/test/gtest/include/gtest/gtest-param-test.h:496:38: note: expanded from macro 'INSTANTIATE_TEST_CASE_P'
static_assert(::testing::internal::InstantiateTestCase_P_IsDeprecated(), \
^
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/pdal/test/gtest/include/gtest/internal/gtest-internal.h:1207:1: note: 'InstantiateTestCase_P_IsDeprecated' has been explicitly marked deprecated here
GTEST_INTERNAL_DEPRECATED(
^
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/pdal/test/gtest/include/gtest/internal/gtest-port.h:2224:59: note: expanded from macro 'GTEST_INTERNAL_DEPRECATED'
#define GTEST_INTERNAL_DEPRECATED(message) __attribute__((deprecated(message)))
^
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/pdal/test/PythonFilterTest.cpp:1157:1: warning: 'InstantiateTestCase_P_IsDeprecated' is deprecated: INSTANTIATE_TEST_CASE_P is deprecated, please use INSTANTIATE_TEST_SUITE_P [-Wdeprecated-declarations]
INSTANTIATE_TEST_CASE_P(plugins, jsonWithPredicate,
^
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/pdal/test/gtest/include/gtest/gtest-param-test.h:496:38: note: expanded from macro 'INSTANTIATE_TEST_CASE_P'
static_assert(::testing::internal::InstantiateTestCase_P_IsDeprecated(), \
^
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/pdal/test/gtest/include/gtest/internal/gtest-internal.h:1207:1: note: 'InstantiateTestCase_P_IsDeprecated' has been explicitly marked deprecated here
GTEST_INTERNAL_DEPRECATED(
^
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/pdal/test/gtest/include/gtest/internal/gtest-port.h:2224:59: note: expanded from macro 'GTEST_INTERNAL_DEPRECATED'
#define GTEST_INTERNAL_DEPRECATED(message) __attribute__((deprecated(message)))
^
2 warnings generated.
[ 86% 31/36] Building CXX object test/gtest/CMakeFiles/gtest.dir/src/gtest-all.cc.o
[ 88% 32/36] Linking CXX static library lib/libgtest.a
[ 91% 35/36] Linking CXX static library lib/libgtest_main.a
[ 94% 35/36] Linking CXX executable pdal_io_numpy_test
FAILED: pdal_io_numpy_test
: && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O3 -DNDEBUG -fstack-protector-strong CMakeFiles/pdal_io_numpy_test.dir/test/NumpyReaderTest.cpp.o CMakeFiles/pdal_io_numpy_test.dir/test/Support.cpp.o CMakeFiles/pdal_io_numpy_test.dir/plang/Invocation.cpp.o CMakeFiles/pdal_io_numpy_test.dir/plang/Environment.cpp.o CMakeFiles/pdal_io_numpy_test.dir/plang/Redirector.cpp.o CMakeFiles/pdal_io_numpy_test.dir/plang/Script.cpp.o -o pdal_io_numpy_test -Wl,-rpath,/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/_skbuild/freebsd-11.4-RELEASE-p11-i386-3.8/cmake-build:/usr/local/lib libpdal_plugin_reader_numpy.so /usr/local/lib/libpython3.8.so /usr/local/lib/libpdal_base.so.13.0.0 /usr/local/lib/libpdal_util.so.13.0.0 lib/libgtest.a -lpthread && :
/usr/bin/ld: warning: liblazperf.so, needed by /usr/local/lib/libpdal_base.so.13.0.0, not found (try using -rpath or -rpath-link)
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::OutFileStream::cb()'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::compress_chunk_table(std::__1::function<void ()(unsigned char const*, unsigned int)>, std::__1::vector<unsigned int, std::__1::allocator<unsigned int> > const&)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::InFileStream::cb()'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::laz_vlr::data() const'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::build_las_compressor(std::__1::function<void ()(unsigned char const*, unsigned int)>, int, unsigned int)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::OutFileStream::OutFileStream(std::__1::basic_ostream<char, std::__1::char_traits<char> >&)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::laz_vlr::laz_vlr(int, int, unsigned int)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::InFileStream::reset()'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::laz_vlr::~laz_vlr()'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::laz_vlr::laz_vlr(char const*)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::build_las_decompressor(std::__1::function<void ()(unsigned char*, unsigned int)>, int, unsigned int)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::decompress_chunk_table(std::__1::function<void ()(unsigned char*, unsigned int)>, unsigned int)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::InFileStream::~InFileStream()'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::InFileStream::InFileStream(std::__1::basic_istream<char, std::__1::char_traits<char> >&)'
c++: error: linker command failed with exit code 1 (use -v to see invocation)
[ 97% 35/36] Linking CXX executable pdal_filters_python_test
FAILED: pdal_filters_python_test
: && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O3 -DNDEBUG -fstack-protector-strong CMakeFiles/pdal_filters_python_test.dir/test/PythonFilterTest.cpp.o CMakeFiles/pdal_filters_python_test.dir/test/Support.cpp.o CMakeFiles/pdal_filters_python_test.dir/plang/Invocation.cpp.o CMakeFiles/pdal_filters_python_test.dir/plang/Environment.cpp.o CMakeFiles/pdal_filters_python_test.dir/plang/Redirector.cpp.o CMakeFiles/pdal_filters_python_test.dir/plang/Script.cpp.o -o pdal_filters_python_test -Wl,-rpath,/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/_skbuild/freebsd-11.4-RELEASE-p11-i386-3.8/cmake-build:/usr/local/lib libpdal_plugin_filter_python.so /usr/local/lib/libpython3.8.so /usr/local/lib/libpdal_base.so.13.0.0 /usr/local/lib/libpdal_util.so.13.0.0 lib/libgtest.a -lpthread && :
/usr/bin/ld: warning: liblazperf.so, needed by /usr/local/lib/libpdal_base.so.13.0.0, not found (try using -rpath or -rpath-link)
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::OutFileStream::cb()'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::compress_chunk_table(std::__1::function<void ()(unsigned char const*, unsigned int)>, std::__1::vector<unsigned int, std::__1::allocator<unsigned int> > const&)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::InFileStream::cb()'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::laz_vlr::data() const'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::build_las_compressor(std::__1::function<void ()(unsigned char const*, unsigned int)>, int, unsigned int)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::OutFileStream::OutFileStream(std::__1::basic_ostream<char, std::__1::char_traits<char> >&)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::laz_vlr::laz_vlr(int, int, unsigned int)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::InFileStream::reset()'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::laz_vlr::~laz_vlr()'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::laz_vlr::laz_vlr(char const*)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::build_las_decompressor(std::__1::function<void ()(unsigned char*, unsigned int)>, int, unsigned int)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::decompress_chunk_table(std::__1::function<void ()(unsigned char*, unsigned int)>, unsigned int)'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::InFileStream::~InFileStream()'
/usr/local/lib/libpdal_base.so.13.0.0: undefined reference to `lazperf::InFileStream::InFileStream(std::__1::basic_istream<char, std::__1::char_traits<char> >&)'
c++: error: linker command failed with exit code 1 (use -v to see invocation)
ninja: build stopped: subcommand failed.
File "/usr/local/lib/python3.8/site-packages/skbuild/setuptools_wrap.py", line 589, in setup
cmkr.make(make_args, env=env)
File "/usr/local/lib/python3.8/site-packages/skbuild/cmaker.py", line 496, in make
raise SKBuildError(
An error occurred while building with CMake.
Command:
cmake --build . --target install --config Release --
Source directory:
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5
Working directory:
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/_skbuild/freebsd-11.4-RELEASE-p11-i386-3.8/cmake-build
Please see CMake's output for more information.
--------------------------------------------------------------------------------
-- Trying "Ninja" generator
--------------------------------
---------------------------
----------------------
-----------------
------------
-------
--
--
-------
------------
-----------------
----------------------
---------------------------
--------------------------------
-- Trying "Ninja" generator - success
--------------------------------------------------------------------------------
Configuring Project
Working directory:
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/_skbuild/freebsd-11.4-RELEASE-p11-i386-3.8/cmake-build
Command:
cmake /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/pdal -G Ninja -DCMAKE_INSTALL_PREFIX:PATH=/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-2.3.5/_skbuild/freebsd-11.4-RELEASE-p11-i386-3.8/cmake-install -DPYTHON_EXECUTABLE:FILEPATH=/usr/local/bin/python3.8 -DPYTHON_VERSION_STRING:STRING=3.8.10 -DPYTHON_INCLUDE_DIR:PATH=/usr/local/include/python3.8 -DPYTHON_LIBRARY:FILEPATH=/usr/local/lib/libpython3.8.so -DSKBUILD:BOOL=TRUE -DCMAKE_MODULE_PATH:PATH=/usr/local/lib/python3.8/site-packages/skbuild/resources/cmake -DCMAKE_BUILD_TYPE:STRING=Release
Traceback (most recent call last):
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-pdal