[package - main-armv6-default][biology/phyml] Failed for phyml-3.3.20200621,1 in stage

From: <pkg-fallout_at_FreeBSD.org>
Date: Sat, 31 Jul 2021 17:22:46 GMT
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     ports_at_FreeBSD.org
Log URL:        http://beefy8.nyi.freebsd.org/data/main-armv6-default/pe8cfea34d340_s297e9f364b/logs/phyml-3.3.20200621,1.log
Build URL:      http://beefy8.nyi.freebsd.org/build.html?mastername=main-armv6-default&build=pe8cfea34d340_s297e9f364b
Log:

=>> Building biology/phyml
build started at Sat Jul 31 17:11:53 UTC 2021
port directory: /usr/ports/biology/phyml
package name: phyml-3.3.20200621,1
building for: FreeBSD main-armv6-default-job-09 14.0-CURRENT FreeBSD 14.0-CURRENT 1400025 arm
maintained by: ports_at_FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1300121
Jail OSVERSION: 1400025
Job Id: 09




!!! Jail is newer than host. (Jail: 1400025, Host: 1300121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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---Begin OPTIONS List---
===> The following configuration options are available for phyml-3.3.20200621,1:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
====> MPI (Message Passing Interface) support: you can only select none or one of them
     MPICH=off: Parallel processing support via MPICH 3
     OPENMPI=off: Parallel processing support via Open MPI
===> Use 'make config' to modify these settings
---End OPTIONS List---

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ports_at_FreeBSD.org
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--disable-beagle --disable-native --disable-mpi --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
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=======================<phase: check-sanity   >============================
===>   NOTICE:

The phyml port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

<snip>
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checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
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config.status: creating doc/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-beagle
===========================================================================
=======================<phase: build          >============================
===>  Building for phyml-3.3.20200621,1
/nxb-bin/usr/bin/make  all-recursive
Making all in src
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c
mv -f .deps/main.Tpo .deps/main.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT utilities.o -MD -MP -MF .deps/utilities.Tpo -c -o utilities.o utilities.c
utilities.c:8865:26: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
  while((c != '(') && (c != EOF));
                       ~ ^  ~~~
utilities.c:8867:7: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
  if(c==EOF)
     ~^ ~~~
utilities.c:8879:11: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c==EOF) break;
         ~^ ~~~
utilities.c:8886:11: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c==EOF || c==';') break;
         ~^ ~~~
utilities.c:9167:12: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c == EOF) break;
         ~ ^  ~~~
5 warnings generated.
mv -f .deps/utilities.Tpo .deps/utilities.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT optimiz.o -MD -MP -MF .deps/optimiz.Tpo -c -o optimiz.o optimiz.c
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/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT lk.o -MD -MP -MF .deps/lk.Tpo -c -o lk.o lk.c
mv -f .deps/lk.Tpo .deps/lk.Po
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mv -f .deps/eigen.Tpo .deps/eigen.Po
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/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT alrt.o -MD -MP -MF .deps/alrt.Tpo -c -o alrt.o alrt.c
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/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT interface.o -MD -MP -MF .deps/interface.Tpo -c -o interface.o interface.c
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/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT cl.o -MD -MP -MF .deps/cl.Tpo -c -o cl.o cl.c
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/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT spr.o -MD -MP -MF .deps/spr.Tpo -c -o spr.o spr.c
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/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT draw.o -MD -MP -MF .deps/draw.Tpo -c -o draw.o draw.c
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/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT stats.o -MD -MP -MF .deps/stats.Tpo -c -o stats.o stats.c
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/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT times.o -MD -MP -MF .deps/times.Tpo -c -o times.o times.c
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/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT tiporder.o -MD -MP -MF .deps/tiporder.Tpo -c -o tiporder.o tiporder.c
mv -f .deps/tiporder.Tpo .deps/tiporder.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT io.o -MD -MP -MF .deps/io.Tpo -c -o io.o io.c
io.c:1167:12: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c == EOF) return 0;
         ~ ^  ~~~
io.c:1177:16: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
          if(c == EOF) return 0;
             ~ ^  ~~~
io.c:1182:12: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c == EOF) return 0;
         ~ ^  ~~~
io.c:1193:12: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c == EOF) return 0;
         ~ ^  ~~~
io.c:1214:16: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
          if(c == EOF) return 0;
             ~ ^  ~~~
io.c:1542:17: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      else if(c == EOF)
              ~ ^  ~~~
io.c:1571:8: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
  if(c == EOF) return 0;
     ~ ^  ~~~
io.c:1633:26: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
  while((c != '(') && (c != EOF));
                       ~ ^  ~~~
io.c:1636:7: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
  if(c==EOF) return NULL;
     ~^ ~~~
io.c:1648:16: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
          if(c == EOF || c == ';') break;
             ~ ^  ~~~
io.c:1664:11: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c==EOF || c==';') break;
         ~^ ~~~
11 warnings generated.
mv -f .deps/io.Tpo .deps/io.Po
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/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT xml.o -MD -MP -MF .deps/xml.Tpo -c -o xml.o xml.c
mv -f .deps/xml.Tpo .deps/xml.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT date.o -MD -MP -MF .deps/date.Tpo -c -o date.o date.c
mv -f .deps/date.Tpo .deps/date.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT sse.o -MD -MP -MF .deps/sse.Tpo -c -o sse.o sse.c
mv -f .deps/sse.Tpo .deps/sse.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT avx.o -MD -MP -MF .deps/avx.Tpo -c -o avx.o avx.c
mv -f .deps/avx.Tpo .deps/avx.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT tbe.o -MD -MP -MF .deps/tbe.Tpo -c -o tbe.o tbe.c
mv -f .deps/tbe.Tpo .deps/tbe.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT ancestral.o -MD -MP -MF .deps/ancestral.Tpo -c -o ancestral.o ancestral.c
mv -f .deps/ancestral.Tpo .deps/ancestral.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT mixt.o -MD -MP -MF .deps/mixt.Tpo -c -o mixt.o mixt.c
mv -f .deps/mixt.Tpo .deps/mixt.Po
/nxb-bin/usr/bin/cc  -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline   -o phyml main.o  utilities.o  optimiz.o  lk.o  bionj.o  models.o  free.o  help.o  simu.o  eigen.o  pars.o  alrt.o  interface.o  cl.o  spr.o  draw.o  stats.o  rates.o  mcmc.o  times.o  tiporder.o  io.o  make.o  nexus.o  init.o  xml.o  date.o  sse.o  avx.o  tbe.o  ancestral.o  mixt.o -lm -lm


.:  Building [phyml]. Version 3.3.20200621 :.



Done.
===========================================================================
=======================<phase: run-depends    >============================
===========================================================================
=======================<phase: stage          >============================
===>  Staging for phyml-3.3.20200621,1
===>   Generating temporary packing list
Making install in src


.:  Building [phyml]. Version 3.3.20200621 :.



Done.
 /bin/mkdir -p '/wrkdirs/usr/ports/biology/phyml/work/stage/usr/local/bin'
  install  -s -m 555 phyml '/wrkdirs/usr/ports/biology/phyml/work/stage/usr/local/bin'
(cd /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20200621/doc && install  -m 0644 *.pdf  /wrkdirs/usr/ports/biology/phyml/work/stage/usr/local/share/doc/phyml)
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/phyml
Received on Sat Jul 31 2021 - 17:22:46 UTC

Original text of this message