[package - main-arm64-default][biology/hhsuite] Failed for hhsuite-3.3.0 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Sat, 31 Jul 2021 00:22:50 GMT
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri_at_FreeBSD.org
Log URL:        http://ampere2.nyi.freebsd.org/data/main-arm64-default/pd69639d824b8_s7cbf1de38e/logs/hhsuite-3.3.0.log
Build URL:      http://ampere2.nyi.freebsd.org/build.html?mastername=main-arm64-default&build=pd69639d824b8_s7cbf1de38e
Log:

=>> Building biology/hhsuite
build started at Sat Jul 31 00:22:08 UTC 2021
port directory: /usr/ports/biology/hhsuite
package name: hhsuite-3.3.0
building for: FreeBSD main-arm64-default-job-11 14.0-CURRENT FreeBSD 14.0-CURRENT 1400027 arm64
maintained by: yuri_at_FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-20-g137a4a48
Host OSVERSION: 1400008
Jail OSVERSION: 1400027
Job Id: 11




!!! Jail is newer than host. (Jail: 1400027, Host: 1400008) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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=======================<phase: check-sanity   >============================
===>  License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   hhsuite-3.3.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.17.1.pkg
[main-arm64-default-job-11] Installing pkg-1.17.1...
[main-arm64-default-job-11] Extracting pkg-1.17.1: .......... done
===>   hhsuite-3.3.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of hhsuite-3.3.0
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by hhsuite-3.3.0 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by hhsuite-3.3.0 for building
=> SHA256 Checksum OK for soedinglab-hh-suite-v3.3.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by hhsuite-3.3.0 for building
===>  Extracting for hhsuite-3.3.0
=> SHA256 Checksum OK for soedinglab-hh-suite-v3.3.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for hhsuite-3.3.0
===>  Applying FreeBSD patches for hhsuite-3.3.0 from /usr/ports/biology/hhsuite/files
===========================================================================
=======================<phase: build-depends  >============================
===>   hhsuite-3.3.0 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-3.20.5.pkg
[main-arm64-default-job-11] Installing cmake-3.20.5...
[main-arm64-default-job-11] `-- Installing curl-7.78.0...
[main-arm64-default-job-11] |   `-- Installing ca_root_nss-3.68...
[main-arm64-default-job-11] |   `-- Extracting ca_root_nss-3.68: ........ done
[main-arm64-default-job-11] |   `-- Installing libnghttp2-1.44.0...
[main-arm64-default-job-11] |   `-- Extracting libnghttp2-1.44.0: .......... done
[main-arm64-default-job-11] |   `-- Installing libssh2-1.9.0_3,3...
<snip>
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem
===>   hhsuite-3.3.0 depends on file: /usr/local/bin/cmake - found
===>   Returning to build of hhsuite-3.3.0
===>   hhsuite-3.3.0 depends on executable: ninja - not found
===>   Installing existing package /packages/All/ninja-1.10.2,2.pkg
[main-arm64-default-job-11] Installing ninja-1.10.2,2...
[main-arm64-default-job-11] `-- Installing python38-3.8.11...
[main-arm64-default-job-11] |   `-- Installing libffi-3.3_1...
[main-arm64-default-job-11] |   `-- Extracting libffi-3.3_1: .......... done
[main-arm64-default-job-11] |   `-- Installing mpdecimal-2.5.1...
[main-arm64-default-job-11] |   `-- Extracting mpdecimal-2.5.1: .......... done
[main-arm64-default-job-11] |   `-- Installing readline-8.1.1...
[main-arm64-default-job-11] |   `-- Extracting readline-8.1.1: .......... done
[main-arm64-default-job-11] `-- Extracting python38-3.8.11: .......... done
[main-arm64-default-job-11] Extracting ninja-1.10.2,2: ........ done
=====
Message from python38-3.8.11:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py38-gdbm       databases/py-gdbm_at_py38
py38-sqlite3    databases/py-sqlite3_at_py38
py38-tkinter    x11-toolkits/py-tkinter_at_py38
===>   hhsuite-3.3.0 depends on executable: ninja - found
===>   Returning to build of hhsuite-3.3.0
===>   hhsuite-3.3.0 depends on file: /usr/local/bin/python3.8 - found
===>   hhsuite-3.3.0 depends on package: perl5>=5.32.r0<5.33 - not found
===>   Installing existing package /packages/All/perl5-5.32.1_1.pkg
[main-arm64-default-job-11] Installing perl5-5.32.1_1...
[main-arm64-default-job-11] Extracting perl5-5.32.1_1: .......... done
===>   hhsuite-3.3.0 depends on package: perl5>=5.32.r0<5.33 - found
===>   Returning to build of hhsuite-3.3.0
===========================================================================
=======================<phase: lib-depends    >============================
===>   hhsuite-3.3.0 depends on shared library: libmpi.so - not found
===>   Installing existing package /packages/All/openmpi-4.1.1.pkg
[main-arm64-default-job-11] Installing openmpi-4.1.1...
[main-arm64-default-job-11] `-- Installing gcc10-10.3.0...
[main-arm64-default-job-11] |   `-- Installing binutils-2.33.1_4,1...
[main-arm64-default-job-11] |   `-- Extracting binutils-2.33.1_4,1: .......... done
[main-arm64-default-job-11] |   `-- Installing gmp-6.2.1...
[main-arm64-default-job-11] |   `-- Extracting gmp-6.2.1: .......... done
[main-arm64-default-job-11] |   `-- Installing mpc-1.2.0...
[main-arm64-default-job-11] |   | `-- Installing mpfr-4.1.0...
[main-arm64-default-job-11] |   | `-- Extracting mpfr-4.1.0: .......... done
[main-arm64-default-job-11] |   `-- Extracting mpc-1.2.0: ......... done
[main-arm64-default-job-11] `-- Extracting gcc10-10.3.0: .......... done
[main-arm64-default-job-11] `-- Installing hwloc2-2.4.1...
[main-arm64-default-job-11] |   `-- Installing libpciaccess-0.16...
[main-arm64-default-job-11] |   | `-- Installing pciids-20210627...
[main-arm64-default-job-11] |   | `-- Extracting pciids-20210627: ..... done
[main-arm64-default-job-11] |   `-- Extracting libpciaccess-0.16: ......... done
[main-arm64-default-job-11] |   `-- Installing libxml2-2.9.12...
[main-arm64-default-job-11] |   `-- Extracting libxml2-2.9.12: .......... done
[main-arm64-default-job-11] `-- Extracting hwloc2-2.4.1: .......... done
[main-arm64-default-job-11] `-- Installing libevent-2.1.12...
[main-arm64-default-job-11] `-- Extracting libevent-2.1.12: .......... done
[main-arm64-default-job-11] `-- Installing libltdl-2.4.6...
[main-arm64-default-job-11] `-- Extracting libltdl-2.4.6: .......... done
[main-arm64-default-job-11] `-- Installing munge-0.5.14_1...
[main-arm64-default-job-11] `-- Extracting munge-0.5.14_1: ......... done
[main-arm64-default-job-11] `-- Installing slurm-wlm-20.02.7...
[main-arm64-default-job-11] |   `-- Installing hdf-szip-2.1.1...
[main-arm64-default-job-11] |   `-- Extracting hdf-szip-2.1.1: .......... done
[main-arm64-default-job-11] |   `-- Installing hdf5-1.10.6,1...
[main-arm64-default-job-11] |   `-- Extracting hdf5-1.10.6,1: .......... done
[main-arm64-default-job-11] |   `-- Installing json-c-0.15_1...
[main-arm64-default-job-11] |   `-- Extracting json-c-0.15_1: .......... done
[main-arm64-default-job-11] |   `-- Installing libsysinfo-0.0.3_2...
[main-arm64-default-job-11] |   `-- Extracting libsysinfo-0.0.3_2: ......... done
[main-arm64-default-job-11] |   `-- Installing lua52-5.2.4...
[main-arm64-default-job-11] |   | `-- Installing libedit-3.1.20210216,1...
[main-arm64-default-job-11] |   | `-- Extracting libedit-3.1.20210216,1: .......... done
[main-arm64-default-job-11] |   `-- Extracting lua52-5.2.4: ......... done
===> Creating groups.
Creating group 'slurm' with gid '468'.
===> Creating users
Creating user 'slurm' with uid '468'.
[main-arm64-default-job-11] `-- Extracting slurm-wlm-20.02.7: .......... done
[main-arm64-default-job-11] Extracting openmpi-4.1.1: .......... done
=====
Message from gcc10-10.3.0:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc10

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===>   hhsuite-3.3.0 depends on shared library: libmpi.so - found (/usr/local/mpi/openmpi/lib/libmpi.so)
===>   Returning to build of hhsuite-3.3.0
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for hhsuite-3.3.0
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/hhsuite/work/.build
-- The C compiler identification is Clang 12.0.1
-- The CXX compiler identification is Clang 12.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Compiler is clang(++)
-- Looking for fmemopen
-- Looking for fmemopen - found
-- Found MPI_C: /usr/local/mpi/openmpi/lib/libmpi.so (found version "3.1") 
-- Found MPI_CXX: /usr/local/mpi/openmpi/lib/libmpi_cxx.so (found version "3.1") 
-- Found MPI: TRUE (found version "3.1")  
-- xxd not found, using xxdi.pl instead
-- Found OpenMP_C: -fopenmp=libomp (found version "5.0") 
-- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES) 
-- Could NOT find OpenMP (missing: OpenMP_CXX_FOUND) (found version "5.0")
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    BOOST_PYTHON_SUFFIX
    CMAKE_COLOR_MAKEFILE
    CMAKE_CXX_FLAGS_DEBUG
    CMAKE_C_FLAGS_DEBUG
    CMAKE_MODULE_LINKER_FLAGS
    CMAKE_SHARED_LINKER_FLAGS
    CMAKE_VERBOSE_MAKEFILE
    Python_ADDITIONAL_VERSIONS
    THREADS_HAVE_PTHREAD_ARG


-- Build files have been written to: /wrkdirs/usr/ports/biology/hhsuite/work/.build
===========================================================================
=======================<phase: build          >============================
===>  Building for hhsuite-3.3.0
[  1% 2/98] /usr/bin/cc  -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simde -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simd -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ext -std=c99 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ffindex_unpack.c
[  2% 3/98] /usr/bin/cc  -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simde -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simd -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ext -std=c99 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ffindex_order.c
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/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ffindex_apply_mpi.c:172:106: warning: format specifies type 'long long' but the argument has type 'long' [-Wformat]
            fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status));
                                                 ~~~~                                                    ^~~~~~~~~~~
                                                 %ld
1 warning generated.
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/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ffindex_apply_mpi.c:172:106: warning: format specifies type 'long long' but the argument has type 'long' [-Wformat]
            fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status));
                                                 ~~~~                                                    ^~~~~~~~~~~
                                                 %ld
1 warning generated.
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cc: warning: -Wl,-rpath=-Wl,-rpath=/usr/local/lib/gcc10: 'linker' input unused [-Wunused-command-line-argument]
cc: warning: -Wl,-rpath: 'linker' input unused [-Wunused-command-line-argument]
cc: warning: -Wl,/usr/local/mpi/openmpi/lib: 'linker' input unused [-Wunused-command-line-argument]
cc: warning: -Wl,--enable-new-dtags: 'linker' input unused [-Wunused-command-line-argument]
[ 13% 14/98] : && /usr/local/bin/cmake -E rm -f lib/ffindex/src/mpq/libmpq.a && /usr/bin/ar qc lib/ffindex/src/mpq/libmpq.a  lib/ffindex/src/mpq/CMakeFiles/mpq.dir/mpq.c.o && /usr/bin/ranlib lib/ffindex/src/mpq/libmpq.a && :
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[ 20% 21/98] : && /usr/bin/cc -std=c99 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o lib/ffindex/src/ffindex_reduce  lib/ffindex/src/libffindex.a && :
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[ 22% 23/98] : && /usr/bin/cc -std=c99 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o lib/ffindex/src/ffindex_from_fasta_with_split  lib/ffindex/src/libffindex.a && :
[ 23% 24/98] : && /usr/bin/cc -std=c99 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o lib/ffindex/src/ffindex_build  lib/ffindex/src/libffindex.a && :
[ 24% 25/98] : && /usr/bin/cc -std=c99 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong   -Wl,-rpath=-Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath -Wl,/usr/local/mpi/openmpi/lib -Wl,--enable-new-dtags -pthread lib/ffindex/src/CMakeFiles/ffindex_apply_mpi.dir/ffindex_apply_mpi.c.o -o lib/ffindex/src/ffindex_apply_mpi  -Wl,-rpath,/usr/local/mpi/openmpi/lib:  lib/ffindex/src/libffindex.a  lib/ffindex/src/mpq/libmpq.a  /usr/local/mpi/openmpi/lib/libmpi.so && :
[ 25% 26/98] : && /usr/bin/cc -std=c99 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o lib/ffindex/src/ffindex_apply  lib/ffindex/src/libffindex.a && :
[ 26% 27/98] cd /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/data && mkdir -p /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated && /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/cmake/xxdi.pl context_data.lib > /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.lib.h && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.lib.h > /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.lib.h.tmp && mv -f /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.lib.h.tmp /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.lib.h
[ 27% 28/98] cd /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/data && mkdir -p /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated && /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/cmake/xxdi.pl cs219.lib > /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/cs219.lib.h && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/cs219.lib.h > /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/cs219.lib.h.tmp && mv -f /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/cs219.lib.h.tmp /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/cs219.lib.h
[ 28% 29/98] /usr/bin/c++  -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simde -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simd -Isrc -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src/cs -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++0x -fsigned-char -march=native -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src/hhviterbialgorithm.cpp
FAILED: src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o 
/usr/bin/c++  -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simde -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simd -Isrc -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src/cs -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++0x -fsigned-char -march=native -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src/hhviterbialgorithm.cpp
c++: error: the clang compiler does not support '-march=native'
[ 29% 29/98] cd /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/data && mkdir -p /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated && /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/cmake/xxdi.pl context_data.crf > /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.crf.h && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.crf.h > /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.crf.h.tmp && mv -f /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.crf.h.tmp /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.crf.h
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/hhsuite
Received on Sat Jul 31 2021 - 00:22:50 UTC

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