[package - 130powerpc64-quarterly][biology/freebayes] Failed for freebayes-1.2.0_3 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Thu, 29 Jul 2021 06:49:00 GMT
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwb_at_FreeBSD.org
Log URL:        http://foul1.nyi.freebsd.org/data/130powerpc64-quarterly/03c599c1eb7a/logs/freebayes-1.2.0_3.log
Build URL:      http://foul1.nyi.freebsd.org/build.html?mastername=130powerpc64-quarterly&build=03c599c1eb7a
Log:

=>> Building biology/freebayes
build started at Thu Jul 29 06:42:57 UTC 2021
port directory: /usr/ports/biology/freebayes
package name: freebayes-1.2.0_3
building for: FreeBSD 130powerpc64-quarterly-job-10 13.0-RELEASE FreeBSD 13.0-RELEASE powerpc
maintained by: jwb_at_FreeBSD.org
Makefile ident: 
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OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/freebayes"  EXAMPLESDIR="share/examples/freebayes"  DATADIR="share/freebayes"  WWWDIR="www/freebayes"  ETCDIR="etc/freebayes"
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=======================<phase: check-sanity   >============================
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   freebayes-1.2.0_3 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.16.3.txz
[130powerpc64-quarterly-job-10] Installing pkg-1.16.3...
[130powerpc64-quarterly-job-10] Extracting pkg-1.16.3: .......... done
===>   freebayes-1.2.0_3 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of freebayes-1.2.0_3
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by freebayes-1.2.0_3 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by freebayes-1.2.0_3 for building
=> SHA256 Checksum OK for ekg-freebayes-v1.2.0_GH0.tar.gz.
=> SHA256 Checksum OK for walaj-SeqLib-5941c68_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-bwa-c02766e_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-fermi-lite-5bc90f8_GH0.tar.gz.
=> SHA256 Checksum OK for samtools-htslib-49fdfbd_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-bamtools-e77a43f_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-dbb4c51_GH0.tar.gz.
=> SHA256 Checksum OK for vcflib-vcflib-5e3ce04_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fastahack-c68cebb_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-filevercmp-1a9b779_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fsom-a6ef318_GH0.tar.gz.
=> SHA256 Checksum OK for google-googletest-d225acc_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-b704f19_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-multichoose-73d35da_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-smithwaterman-84c08d7_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-tabixpp-80012f8_GH0.tar.gz.
=> SHA256 Checksum OK for samtools-htslib-0f298ce_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by freebayes-1.2.0_3 for building
===>  Extracting for freebayes-1.2.0_3
=> SHA256 Checksum OK for ekg-freebayes-v1.2.0_GH0.tar.gz.
=> SHA256 Checksum OK for walaj-SeqLib-5941c68_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-bwa-c02766e_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-fermi-lite-5bc90f8_GH0.tar.gz.
=> SHA256 Checksum OK for samtools-htslib-49fdfbd_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-bamtools-e77a43f_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-dbb4c51_GH0.tar.gz.
=> SHA256 Checksum OK for vcflib-vcflib-5e3ce04_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fastahack-c68cebb_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-filevercmp-1a9b779_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fsom-a6ef318_GH0.tar.gz.
<snip>
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -o tabix++ main.cpp tabix.o -Ihtslib -L. -Lhtslib \
	-lhts -lpthread -lm -lz
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/vcflib/tabixpp'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/vcflib/tabixpp'
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c freebayes.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c BedReader.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c CNV.cpp
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c fastlz.c	
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c Utility.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c Fasta.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c Parameters.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c Allele.cpp
Allele.cpp:160:13: warning: enumeration values 'ALLELE_GENOTYPE' and 'ALLELE_NULL' not handled in switch [-Wswitch]
    switch (this->type) {
            ^
1 warning generated.
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c Sample.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c Result.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c AlleleParser.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c Genotype.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c DataLikelihood.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c Multinomial.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c Ewens.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c ResultData.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c Dirichlet.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c Marginals.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c split.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c LeftAlign.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c IndelAllele.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c Bias.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11    -c -o Contamination.o Contamination.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c NonCall.cpp
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c SegfaultHandler.cpp
cd ../vcflib/smithwaterman && gmake
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/vcflib/smithwaterman'
c++ -O3 -c -o disorder.o disorder.cpp -I.
c++ -O3 -c -o smithwaterman.o smithwaterman.cpp -I.
c++ -O3 -c -o BandedSmithWaterman.o BandedSmithWaterman.cpp -I.
c++ -O3 -c -o SmithWatermanGotoh.o SmithWatermanGotoh.cpp -I.
c++ -O3 -c -o LeftAlign.o LeftAlign.cpp -I.
c++ -O3 -c -o Repeats.o Repeats.cpp -I.
c++ -O3 -c -o IndelAllele.o IndelAllele.cpp -I.
c++ -O3 smithwaterman.o BandedSmithWaterman.o SmithWatermanGotoh.o disorder.o LeftAlign.o Repeats.o IndelAllele.o -I. -o smithwaterman
ld -r BandedSmithWaterman.o SmithWatermanGotoh.o LeftAlign.o Repeats.o IndelAllele.o disorder.o -o sw.o -L.
#c++ -O3 -c -o smithwaterman.cpp disorder.o BandedSmithWaterman.o SmithWatermanGotoh.o Repeats.o LeftAlign.o IndelAllele.o -I.
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/vcflib/smithwaterman'
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  --std=c++11  -I../src -I../ttmath -I../vcflib/src/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/fastahack/ -I../SeqLib/htslib -I../SeqLib  -c ../vcflib/src/Variant.cpp
./vcflib/src/Variant.cpp:212:5: warning: non-void function does not return a value in all control paths [-Wreturn-type]
    }
    ^
./vcflib/src/Variant.cpp:334:5: warning: non-void function does not return a value in all control paths [-Wreturn-type]
    }
    ^
./vcflib/src/Variant.cpp:368:5: warning: non-void function does not return a value in all control paths [-Wreturn-type]
    }
    ^
./vcflib/src/Variant.cpp:406:5: warning: non-void function does not return a value in all control paths [-Wreturn-type]
    }
    ^
4 warnings generated.
cd ../SeqLib && ./configure && gmake 
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib/missing: Unknown `--is-lightweight' option
Try `/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib/missing --help' for more information
configure: WARNING: 'missing' script is too old or missing
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... nawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of c++... gcc3
checking for gcc... cc
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking whether cc understands -c and -o together... yes
checking dependency style of cc... gcc3
checking for ranlib... ranlib
checking how to run the C++ preprocessor... c++ -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for library containing gzopen... none required
checking for library containing lzma_code... none required
checking for library containing BZ2_bzBuffToBuffDecompress... none required
checking for library containing clock_gettime... none required
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/seqtools/Makefile
config.status: creating config.h
config.status: executing depfiles commands
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib'
gmake  all-recursive
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib'
Making all in bwa
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib/bwa'
cc -c -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS  utils.c -o utils.o
cc -c -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS  kthread.c -o kthread.o
cc -c -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS  ksw.c -o ksw.o
In file included from ksw.c:29:
In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13:
In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13:
/usr/lib/clang/11.0.1/include/mmintrin.h:50:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:129:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:159:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:189:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:216:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:239:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:260:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:287:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:310:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:331:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:352:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:373:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:394:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:416:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_paddsb((__v8qi)__m1, (__v8qi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:439:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_paddsw((__v4hi)__m1, (__v4hi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:461:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_paddusb((__v8qi)__m1, (__v8qi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:483:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_paddusw((__v4hi)__m1, (__v4hi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:504:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_psubb((__v8qi)__m1, (__v8qi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:525:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
    return (__m64)__builtin_ia32_psubw((__v4hi)__m1, (__v4hi)__m2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
gmake[5]: *** [Makefile:26: ksw.o] Error 1
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib/bwa'
gmake[4]: *** [Makefile:358: all-recursive] Error 1
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib'
gmake[3]: *** [Makefile:299: all] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib'
gmake[2]: *** [Makefile:53: ../SeqLib/src/libseqlib.a] Error 2
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/src'
gmake[1]: *** [Makefile:2: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/freebayes
Received on Thu Jul 29 2021 - 06:49:00 UTC

Original text of this message