[package - 130arm64-quarterly][biology/canu] Failed for canu-2.1_1 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Wed, 28 Jul 2021 21:22:25 GMT
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwb_at_FreeBSD.org
Log URL:        http://ampere1.nyi.freebsd.org/data/130arm64-quarterly/861e2a11357f/logs/canu-2.1_1.log
Build URL:      http://ampere1.nyi.freebsd.org/build.html?mastername=130arm64-quarterly&build=861e2a11357f
Log:

=>> Building biology/canu
build started at Wed Jul 28 21:22:06 UTC 2021
port directory: /usr/ports/biology/canu
package name: canu-2.1_1
building for: FreeBSD 130arm64-quarterly-job-07 13.0-RELEASE-p3 FreeBSD 13.0-RELEASE-p3 arm64
maintained by: jwb_at_FreeBSD.org
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Job Id: 07

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=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   canu-2.1_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.16.3.txz
[130arm64-quarterly-job-07] Installing pkg-1.16.3...
[130arm64-quarterly-job-07] Extracting pkg-1.16.3: .......... done
===>   canu-2.1_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of canu-2.1_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by canu-2.1_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by canu-2.1_1 for building
=> SHA256 Checksum OK for canu-2.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by canu-2.1_1 for building
===>  Extracting for canu-2.1_1
=> SHA256 Checksum OK for canu-2.1.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for canu-2.1_1
===>  Applying FreeBSD patches for canu-2.1_1 from /usr/ports/biology/canu/files
===========================================================================
=======================<phase: build-depends  >============================
===>   canu-2.1_1 depends on package: gmake>=4.3 - not found
===>   Installing existing package /packages/All/gmake-4.3_2.txz
[130arm64-quarterly-job-07] Installing gmake-4.3_2...
[130arm64-quarterly-job-07] `-- Installing gettext-runtime-0.21...
[130arm64-quarterly-job-07] |   `-- Installing indexinfo-0.3.1...
[130arm64-quarterly-job-07] |   `-- Extracting indexinfo-0.3.1: .... done
[130arm64-quarterly-job-07] `-- Extracting gettext-runtime-0.21: .......... done
[130arm64-quarterly-job-07] Extracting gmake-4.3_2: .......... done
===>   canu-2.1_1 depends on package: gmake>=4.3 - found
===>   Returning to build of canu-2.1_1
===>   canu-2.1_1 depends on package: perl5>=5.32.r0<5.33 - not found
===>   Installing existing package /packages/All/perl5-5.32.1_1.txz
[130arm64-quarterly-job-07] Installing perl5-5.32.1_1...
[130arm64-quarterly-job-07] Extracting perl5-5.32.1_1: .......... done
===>   canu-2.1_1 depends on package: perl5>=5.32.r0<5.33 - found
===>   Returning to build of canu-2.1_1
===========================================================================
=======================<phase: lib-depends    >============================
===>   canu-2.1_1 depends on shared library: libboost_regex.so - not found
===>   Installing existing package /packages/All/boost-libs-1.72.0_5.txz
[130arm64-quarterly-job-07] Installing boost-libs-1.72.0_5...
[130arm64-quarterly-job-07] `-- Installing icu-69.1,1...
[130arm64-quarterly-job-07] `-- Extracting icu-69.1,1: .......... done
[130arm64-quarterly-job-07] Extracting boost-libs-1.72.0_5: .......... done
=====
Message from boost-libs-1.72.0_5:

--
You have built the Boost library with thread support.

Don't forget to add -pthread to your linker options when
linking your code.
===>   canu-2.1_1 depends on shared library: libboost_regex.so - found (/usr/local/lib/libboost_regex.so)
===>   Returning to build of canu-2.1_1
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for canu-2.1_1
===========================================================================
=======================<phase: build          >============================
===>  Building for canu-2.1_1
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/canu/work/canu-2.1/src'
/bin/sh: git: not found
Building release v2.1
For 'FreeBSD' '1300139' as 'aarch64' into '/wrkdirs/usr/ports/biology/canu/work/canu-2.1/src//build/{bin,obj}'.
Using '/usr/bin/c++' version '11.0.1'.
Using user-supplied CXXFLAGS '-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include '.

c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-2.1/src//build/obj/lib/libcanu.a/utility/src/utility/runtime.o -c -MD -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pthread -fopenmp -fPIC -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-2.1/src -Iutility/src/utility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/runtime.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-2.1/src//build/obj/lib/libcanu.a/utility/src/utility/align-ssw.o -c -MD -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pthread -fopenmp -fPIC -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-2.1/src -Iutility/src/utility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/align-ssw.C
In file included from utility/src/utility/align-ssw.C:36:
In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13:
In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13:
/usr/lib/clang/11.0.1/include/mmintrin.h:33:5: error: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
    __builtin_ia32_emms();
    ^
/usr/lib/clang/11.0.1/include/mmintrin.h:33:5: note: '__builtin_isless' declared here
/usr/lib/clang/11.0.1/include/mmintrin.h:33:25: error: too few arguments to function call, expected 2, have 0
    __builtin_ia32_emms();
                        ^
/usr/lib/clang/11.0.1/include/mmintrin.h:50:19: error: use of undeclared identifier '__builtin_ia32_vec_init_v2si'
    return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:67:12: error: use of undeclared identifier '__builtin_ia32_vec_ext_v2si'
    return __builtin_ia32_vec_ext_v2si((__v2si)__m, 0);
           ^
/usr/lib/clang/11.0.1/include/mmintrin.h:129:19: error: use of undeclared identifier '__builtin_ia32_packsswb'
    return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:159:19: error: use of undeclared identifier '__builtin_ia32_packssdw'
    return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:189:19: error: use of undeclared identifier '__builtin_ia32_packuswb'
    return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:216:19: error: use of undeclared identifier '__builtin_ia32_punpckhbw'
    return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:239:19: error: use of undeclared identifier '__builtin_ia32_punpckhwd'
    return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:260:19: error: use of undeclared identifier '__builtin_ia32_punpckhdq'
    return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:287:19: error: use of undeclared identifier '__builtin_ia32_punpcklbw'
    return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:310:19: error: use of undeclared identifier '__builtin_ia32_punpcklwd'
    return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:331:19: error: use of undeclared identifier '__builtin_ia32_punpckldq'
    return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:352:19: error: use of undeclared identifier '__builtin_ia32_paddb'; did you mean '__builtin_arm_addg'?
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:352:19: note: '__builtin_arm_addg' declared here
/usr/lib/clang/11.0.1/include/mmintrin.h:352:19: error: first argument of MTE builtin function must be a pointer ('__v8qi' (vector of 8 'char' values) invalid)
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^                    ~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:373:19: error: use of undeclared identifier '__builtin_ia32_paddw'; did you mean '__builtin_arm_addg'?
    return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:352:19: note: '__builtin_arm_addg' declared here
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:373:19: error: first argument of MTE builtin function must be a pointer ('__v4hi' (vector of 4 'short' values) invalid)
    return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
                  ^                    ~~~~~~~~~~~~
/usr/lib/clang/11.0.1/include/mmintrin.h:394:19: error: use of undeclared identifier '__builtin_ia32_paddd'; did you mean '__builtin_arm_addg'?
    return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:352:19: note: '__builtin_arm_addg' declared here
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:394:19: error: first argument of MTE builtin function must be a pointer ('__v2si' (vector of 2 'int' values) invalid)
    return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2);
                  ^                    ~~~~~~~~~~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
gmake[1]: *** [Makefile:763: /wrkdirs/usr/ports/biology/canu/work/canu-2.1/src//build/obj/lib/libcanu.a/utility/src/utility/align-ssw.o] Error 1
gmake[1]: *** Waiting for unfinished jobs....
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/canu/work/canu-2.1/src'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/canu
Received on Wed Jul 28 2021 - 21:22:25 UTC

Original text of this message