[package - main-i386-default][biology/molden] Failed for molden-5.8.2_4,1 in build
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Date: Thu, 30 Dec 2021 01:40:51 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jmd@FreeBSD.org
Log URL: http://beefy17.nyi.freebsd.org/data/main-i386-default/pb62f24f32e66_sc3a688ef4d/logs/molden-5.8.2_4,1.log
Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=main-i386-default&build=pb62f24f32e66_sc3a688ef4d
Log:
=>> Building biology/molden
build started at Thu Dec 30 01:40:04 UTC 2021
port directory: /usr/ports/biology/molden
package name: molden-5.8.2_4,1
building for: FreeBSD main-i386-default-job-03 14.0-CURRENT FreeBSD 14.0-CURRENT 1400045 i386
maintained by: jmd@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400042
Jail OSVERSION: 1400045
Job Id: 03
!!! Jail is newer than host. (Jail: 1400045, Host: 1400042) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1400045
UNAME_v=FreeBSD 14.0-CURRENT 1400045
UNAME_r=14.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-21-g883afb07
MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=main-i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for molden-5.8.2_4,1:
DATA=on: Install data files
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
jmd@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/molden/work/.cache HOME=/wrkdirs/usr/ports/biology/molden/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/molden/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/molden/work/.cache HOME=/wrkdirs/usr/ports/biology/molden/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/molden/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="c
c" CFLAGS="-O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/molden" EXAMPLESDIR="share/examples/molden" DATADIR="share/molden" WWWDIR="www/molden" ETCDIR="etc/molden"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/molden DOCSDIR=/usr/local/share/doc/molden EXAMPLESDIR=/usr/local/share/examples/molden WWWDIR=/usr/local/www/molden ETCDIR=/usr/local/etc/molden
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CXXINTERNAL_acaad9ca=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "c++"
CC_OUTPUT_921dbbb2_58173849=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_9bdba57c=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_6a4fe7f5=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_6bcac02b=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_67d20829=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_bfa62e83=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_f0b4d593=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_308abb44=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_f00456e5=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_65ad290d=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_f2776b26=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_b2657cc3=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_380987f7=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_160933ec=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_fb62803b=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=14.0-CURRENT
OSREL=14.0
OSVERSION=1400045
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License Molden accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> molden-5.8.2_4,1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5.pkg
[main-i386-default-job-03] Installing pkg-1.17.5...
[main-i386-default-job-03] Extracting pkg-1.17.5: .......... done
===> molden-5.8.2_4,1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of molden-5.8.2_4,1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License Molden accepted by the user
=> molden5.8.2.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch ftp://ftp.cmbi.umcn.nl/pub/molgraph/molden/molden5.8.2.tar.gz
molden5.8.2.tar.gz 5635 kB 6005 kBps 01s
===> Fetching all distfiles required by molden-5.8.2_4,1 for building
===========================================================================
=======================<phase: checksum >============================
===> License Molden accepted by the user
===> Fetching all distfiles required by molden-5.8.2_4,1 for building
=> SHA256 Checksum OK for molden5.8.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License Molden accepted by the user
===> Fetching all distfiles required by molden-5.8.2_4,1 for building
===> Extracting for molden-5.8.2_4,1
=> SHA256 Checksum OK for molden5.8.2.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for molden-5.8.2_4,1
===> Applying FreeBSD patches for molden-5.8.2_4,1 from /usr/ports/biology/molden/files
===========================================================================
=======================<phase: build-depends >============================
===> molden-5.8.2_4,1 depends on executable: gfortran10 - not found
<snip>
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
espchrg.f:992:72:
992 | if (i-k) 110,120,110
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
espchrg.f:999:72:
999 | do 150 j=1,n
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 150 at (1)
espchrg.f:1001:72:
1001 | if (i-k) 130,150,130
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
espchrg.f:1002:72:
1002 | 130 if (j-k) 140,150,140
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
espchrg.f:1009:72:
1009 | if (j-k) 160,170,160
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
espchrg.f:1017:72:
1017 | if (k) 260,260,200
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
espchrg.f:1019:72:
1019 | if (i-k) 230,230,210
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
espchrg.f:1027:72:
1027 | 220 a(ji)=holo
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 220 at (1)
espchrg.f:1029:72:
1029 | if (j-k) 190,190,240
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
espchrg.f:1036:72:
1036 | 250 a(ji)=holo
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 250 at (1)
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o proxim.o proxim.f
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o rdgamu.o rdgamu.f
rdgamu.f:972:22:
971 | call parptr(1,freq,freq,nfreq)
| 2
972 | call parptr(112,frint,ramint,ihasi)
| 1
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/REAL(4)).
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o plvrml.o plvrml.f
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o molsint.o molsint.f
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o runjob.o runjob.f
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o rdmsf.o rdmsf.f
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o wrmsf.o wrmsf.f
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o rdmolf.o rdmolf.f
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o adf_fun.o adf_fun.f
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o rotpol.o rotpol.f
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o extbas.o extbas.f
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o rdcpmd.o rdcpmd.f
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o eem.o eem.f
eem.f:825:72:
825 | assign 30 to next
| 1
Warning: Deleted feature: ASSIGN statement at (1)
eem.f:830:20:
830 | 20 go to next,(30, 50, 70, 110)
| 1
Warning: Deleted feature: Assigned GOTO statement at (1)
eem.f:832:72:
832 | assign 50 to next
| 1
Warning: Deleted feature: ASSIGN statement at (1)
eem.f:841:72:
841 | assign 70 to next
| 1
Warning: Deleted feature: ASSIGN statement at (1)
eem.f:847:72:
847 | assign 110 to next
| 1
Warning: Deleted feature: ASSIGN statement at (1)
eem.f:883:72:
883 | 95 sum = sum + dx(j)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 95 at (1)
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o asspmf.o asspmf.f
asspmf.f:131:22:
130 | call parptr(115,ewin,fdum,idum)
| 2
131 | call parptr(116,fdum,fdum,npmfs)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
asspmf.f:132:22:
130 | call parptr(115,ewin,fdum,idum)
| 2
131 | call parptr(116,fdum,fdum,npmfs)
132 | call parptr(123,fdum,fdum,ipmfm)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
asspmf.f:133:22:
130 | call parptr(115,ewin,fdum,idum)
| 2
.....
133 | call parptr(124,fdum,fdum,levcol)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
asspmf.f:134:22:
130 | call parptr(115,ewin,fdum,idum)
| 2
.....
134 | call parptr(125,fdum,fdum,ipmfh)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
asspmf.f:1284:28:
130 | call parptr(115,ewin,fdum,idum)
| 2
.....
1284 | call parptr(117,pmfmn,pmfmx,npmfmx)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (scalar and rank-1)
asspmf.f:1285:22:
130 | call parptr(115,ewin,fdum,idum)
| 2
.....
1285 | call parptr(118,fdum,fdum,ipmfmn)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
asspmf.f:1286:22:
130 | call parptr(115,ewin,fdum,idum)
| 2
.....
1286 | call parptr(119,fdum,fdum,ipmfmx)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
asspmf.f:1287:22:
130 | call parptr(115,ewin,fdum,idum)
| 2
.....
1287 | call parptr(120,pmflga,fdum,idum)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o srfcal.o srfcal.f
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o rdqchm.o rdqchm.f
rdqchm.f:634:22:
633 | call parptr(1,freq,freq,nfreq)
| 2
634 | call parptr(112,frint,ramint,ihasi)
| 1
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/REAL(4)).
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o rdorca.o rdorca.f
rdorca.f:750:22:
749 | call parptr(1,freq,freq,nfreq)
| 2
750 | call parptr(112,frint,ramint,ihasi)
| 1
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/REAL(4)).
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o rdmaux.o rdmaux.f
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o rdnwch.o rdnwch.f
rdnwch.f:883:22:
882 | call parptr(1,freq,freq,nfreq)
| 2
883 | call parptr(112,frint,ramint,ihasi)
| 1
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/REAL(4)).
gfortran10 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -c -o mpdum.o mpdum.f
cc -O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fstack-protector-strong -fno-strict-aliasing -c -o xwin.o xwin.c
ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
gmake[1]: *** [<builtin>: xwin.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/molden/work/molden5.8'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/molden