From nobody Thu Dec 30 01:31:31 2021 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id CB0751913F97 for ; Thu, 30 Dec 2021 01:31:31 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4JPW2W2jTdz4cYG; Thu, 30 Dec 2021 01:31:31 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy18.nyi.freebsd.org (beefy18.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:21]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 27CD97A6B; Thu, 30 Dec 2021 01:31:31 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy18.nyi.freebsd.org (localhost [127.0.0.1]) by beefy18.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 1BU1VVbm079531; Thu, 30 Dec 2021 01:31:31 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy18.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 1BU1VVs2079529; Thu, 30 Dec 2021 01:31:31 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 30 Dec 2021 01:31:31 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202112300131.1BU1VVs2079529@beefy18.nyi.freebsd.org> To: yuri@FreeBSD.org Subject: [package - main-amd64-default][science/votca] Failed for votca-2021.2.18560 in configure Cc: pkg-fallout@FreeBSD.org ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1640827891; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=r9ZQXowdHSu9gQ7I+CWzbO3VciInDfmc0ASyMfyILlM=; b=KNhFRsUmdSw144vcHJd/pM4byfphk+G63zX5OHsoftdLUg7Fi/qrSmbZj3FDa3WPcQJcgV //XbOyHF6quSrM84W7lKeMX+ZPCCs58UOo4z007woPNFdi4b38wCZ5lY4/8GHI4RKs56UF w0M6KVLC97jSlUQzjjyfbaCg20H2n+G6f8o2in5LZxYV/m7Z7amTasQYYJPuxWm0I7mm6G okDCJRtWYVm1onugIf1uAZQv1n/ib987hSEkGnSEyp/CP3iMBZwayWecdOdHJ/1Qch2/ZI THh3Fd9xSmUTtX8KPQ21sC5B/+Nqi3ZNHRKkNQaRhFLTjEjmrNPOaXvIdDs6ig== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1640827891; a=rsa-sha256; cv=none; b=yyetmQcNiAqw8Jmadsbb+1+4o+Htx7NLFaV7juo1T70N9S9m11lE8tEPrCMJP5kTRbPRgp dkt7fWew4tMZg19KskFX39eOM4Bg3VHDGc9goXFsITYxb17BMxa+PCLGaJPmlnDP8BWFLh a7OLCRVZNihrqA/3IUASGdMp9Ttce3i227nAbN+OGK1SLFCJ9U4fCreBvMTBDAVNIK9CP/ 8Bu3sFzqUhkGyrp+lGAvZ6khJnmuXea64HmzRuFPOc66Ip90+KxraSTuHD1IwihhzLfnqE eQ6VSlCrRTWgnvEGTrq4oPLQpn8EvaQyzn6Un/3CTbmBqmkYHYnniw8zwto/vg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: http://beefy18.nyi.freebsd.org/data/main-amd64-default/pb62f24f32e66_sc3a688ef4d/logs/votca-2021.2.18560.log Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=main-amd64-default&build=pb62f24f32e66_sc3a688ef4d Log: =>> Building science/votca ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status build started at Thu Dec 30 01:30:39 UTC 2021 port directory: /usr/ports/science/votca package name: votca-2021.2.18560 building for: FreeBSD main-amd64-default-job-05 14.0-CURRENT FreeBSD 14.0-CURRENT 1400045 amd64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400042 Jail OSVERSION: 1400045 Job Id: 05 !!! Jail is newer than host. (Jail: 1400045, Host: 1400042) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400045 UNAME_v=FreeBSD 14.0-CURRENT 1400045 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status ===> The following configuration options are available for votca-2021.2.18560: APPS=on: Build applications ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/votca/work/.cache HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/votca/work/.cache HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/votca/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 44 4" --End MAKE_ENV-- --PLIST_SUB-- APPS="" NO_APPS="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.8 PYTHON_LIBDIR=lib/python3.8 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.8/site-packages PYTHON_SUFFIX=38 PYTHON_EXT_SUFFIX=.cpython-38 PYTHON_VER=3.8 PYTHON_VERSION=python3.8 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/votca" EXAMPLESDIR="share/examples/votca" DATADIR="share/votca" WWWDIR="www/votca" ETCDIR="etc/votca" --End PLIST_SUB-- --SUB_LIST-- APPS="" NO_APPS="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/votca DOCSDIR=/usr/local/share/doc/votca EXAMPLESDIR=/usr/local/share/examples/votca WWWDIR=/usr/local/www/votca ETCDIR=/usr/local/etc/votca --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CXXINTERNAL_acaad9ca=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "c++" CC_OUTPUT_921dbbb2_58173849=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_9bdba57c=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_6a4fe7f5=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_6bcac02b=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_67d20829=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_bfa62e83=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_f0b4d593=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_308abb44=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_f00456e5=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_65ad290d=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_f2776b26=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_b2657cc3=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_380987f7=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_160933ec=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" CC_OUTPUT_921dbbb2_fb62803b=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400045 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status =================================================== ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status ===> License APACHE20 accepted by the user =========================================================================== =================================================== ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status ===> votca-2021.2.18560 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.5.pkg [main-amd64-default-job-05] Installing pkg-1.17.5... [main-amd64-default-job-05] Extracting pkg-1.17.5: .......... done ===> votca-2021.2.18560 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of votca-2021.2.18560 =========================================================================== =================================================== ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status =========================================================================== ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status =================================================== ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status [main-amd64-default-job-05] | `-- Extracting py38-cycler-0.11.0: .......... done [main-amd64-default-job-05] | `-- Installing py38-dateutil-2.8.1... [main-amd64-default-job-05] | | `-- Installing py38-six-1.16.0... [main-amd64-default-job-05] | | `-- Extracting py38-six-1.16.0: .......... done [main-amd64-default-job-05] | `-- Extracting py38-dateutil-2.8.1: .......... done [main-amd64-default-job-05] | `-- Installing py38-kiwisolver-1.1.0,1... [main-amd64-default-job-05] | `-- Extracting py38-kiwisolver-1.1.0,1: ......... done [main-amd64-default-job-05] | `-- Installing py38-pillow-8.2.0... [main-amd64-default-job-05] | | `-- Installing lcms2-2.12... [main-amd64-default-job-05] | | `-- Installing tiff-4.3.0... [main-amd64-default-job-05] | | | `-- Installing jbigkit-2.1_1... [main-amd64-default-job-05] | | | `-- Extracting jbigkit-2.1_1: .......... done [main-amd64-default-job-05] | | `-- Extracting tiff-4.3.0: .......... done [main-amd64-default-job-05] | | `-- Extracting lcms2-2.12: .......... done [main-amd64-default-job-05] | | `-- Installing libraqm-0.7.1... [main-amd64-default-job-05] | | `-- Extracting libraqm-0.7.1: .......... done [main-amd64-default-job-05] | | `-- Installing openjpeg-2.4.0... [main-amd64-default-job-05] | | `-- Extracting openjpeg-2.4.0: .......... done [main-amd64-default-job-05] | | `-- Installing py38-olefile-0.46... [main-amd64-default-job-05] | | `-- Extracting py38-olefile-0.46: .......... done [main-amd64-default-job-05] | | `-- Installing py38-tkinter-3.8.12_6... [main-amd64-default-job-05] | | `-- Installing tcl86-8.6.12... [main-amd64-default-job-05] | | `-- Extracting tcl86-8.6.12: .......... done [main-amd64-default-job-05] | | `-- Installing tk86-8.6.12... [main-amd64-default-job-05] | | | `-- Installing libXScrnSaver-1.2.3_2... [main-amd64-default-job-05] | | | `-- Extracting libXScrnSaver-1.2.3_2: .......... done [main-amd64-default-job-05] | | | `-- Installing libXft-2.3.4... [main-amd64-default-job-05] | | | `-- Installing libXrender-0.9.10_2... [main-amd64-default-job-05] | | | `-- Extracting libXrender-0.9.10_2: .......... done [main-amd64-default-job-05] | | | `-- Extracting libXft-2.3.4: .......... done [main-amd64-default-job-05] | | `-- Extracting tk86-8.6.12: .......... done [main-amd64-default-job-05] | | `-- Extracting py38-tkinter-3.8.12_6: ........ done [main-amd64-default-job-05] | | `-- Installing webp-1.2.1... [main-amd64-default-job-05] | | `-- Installing giflib-5.2.1... [main-amd64-default-job-05] | | `-- Extracting giflib-5.2.1: .......... done [main-amd64-default-job-05] | | `-- Extracting webp-1.2.1: .......... done [main-amd64-default-job-05] | `-- Extracting py38-pillow-8.2.0: .......... done [main-amd64-default-job-05] | `-- Installing py38-pluggy-0.13.1... [main-amd64-default-job-05] | `-- Extracting py38-pluggy-0.13.1: .......... done [main-amd64-default-job-05] | `-- Installing py38-pyparsing-3.0.6... [main-amd64-default-job-05] | `-- Extracting py38-pyparsing-3.0.6: .......... done [main-amd64-default-job-05] | `-- Installing py38-pytz-2021.3,1... [main-amd64-default-job-05] | `-- Extracting py38-pytz-2021.3,1: .......... done [main-amd64-default-job-05] | `-- Installing py38-tornado-6.1... [main-amd64-default-job-05] | `-- Extracting py38-tornado-6.1: .......... done [main-amd64-default-job-05] | `-- Installing qhull-7.3.2_2,1... [main-amd64-default-job-05] | `-- Extracting qhull-7.3.2_2,1: .......... done [main-amd64-default-job-05] `-- Extracting py38-matplotlib-3.4.3: .......... done [main-amd64-default-job-05] `-- Installing py38-reportlab-3.5.68... [main-amd64-default-job-05] | `-- Installing adobe-cmaps-20051217_4... [main-amd64-default-job-05] | | `-- Installing mkfontscale-1.2.1... [main-amd64-default-job-05] | | `-- Installing libfontenc-1.1.4... [main-amd64-default-job-05] | | `-- Extracting libfontenc-1.1.4: ......... done [main-amd64-default-job-05] | | `-- Extracting mkfontscale-1.2.1: ....... done [main-amd64-default-job-05] | `-- Extracting adobe-cmaps-20051217_4: .......... done [main-amd64-default-job-05] `-- Extracting py38-reportlab-3.5.68: .......... done [main-amd64-default-job-05] Extracting rdkit-2021.03.5_1: .......... done ===== Message from boost-libs-1.72.0_6: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===== Message from py38-boost-libs-1.72.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> votca-2021.2.18560 depends on package: rdkit>0 - found ===> Returning to build of votca-2021.2.18560 ===> votca-2021.2.18560 depends on file: /usr/local/bin/cmake - not found ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make[1]: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make[1]: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status ===> Installing existing package /packages/All/cmake-3.22.1.pkg [main-amd64-default-job-05] Installing cmake-3.22.1... [main-amd64-default-job-05] `-- Installing jsoncpp-1.9.5... [main-amd64-default-job-05] `-- Extracting jsoncpp-1.9.5: .......... done [main-amd64-default-job-05] `-- Installing libarchive-3.5.2,1... [main-amd64-default-job-05] | `-- Installing zstd-1.5.0... [main-amd64-default-job-05] | `-- Extracting zstd-1.5.0: .......... done [main-amd64-default-job-05] `-- Extracting libarchive-3.5.2,1: .......... done [main-amd64-default-job-05] `-- Installing libuv-1.42.0... [main-amd64-default-job-05] `-- Extracting libuv-1.42.0: .......... done [main-amd64-default-job-05] `-- Installing rhash-1.4.2... [main-amd64-default-job-05] `-- Extracting rhash-1.4.2: .......... done [main-amd64-default-job-05] Extracting cmake-3.22.1: .......... done ===> votca-2021.2.18560 depends on file: /usr/local/bin/cmake - found ===> Returning to build of votca-2021.2.18560 ===> votca-2021.2.18560 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.10.2,2.pkg [main-amd64-default-job-05] Installing ninja-1.10.2,2... [main-amd64-default-job-05] Extracting ninja-1.10.2,2: ........ done ===> votca-2021.2.18560 depends on executable: ninja - found ===> Returning to build of votca-2021.2.18560 ===> votca-2021.2.18560 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.3.9_1.pkg [main-amd64-default-job-05] Installing eigen-3.3.9_1... [main-amd64-default-job-05] `-- Installing blas-3.10.0... [main-amd64-default-job-05] `-- Extracting blas-3.10.0: ........ done [main-amd64-default-job-05] `-- Installing lapack-3.10.0_1... [main-amd64-default-job-05] `-- Extracting lapack-3.10.0_1: .......... done [main-amd64-default-job-05] Extracting eigen-3.3.9_1: .......... done ===> votca-2021.2.18560 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of votca-2021.2.18560 ===> votca-2021.2.18560 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.8.0,1.pkg [main-amd64-default-job-05] Installing pkgconf-1.8.0,1... [main-amd64-default-job-05] Extracting pkgconf-1.8.0,1: .......... done ===> votca-2021.2.18560 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of votca-2021.2.18560 ===> votca-2021.2.18560 depends on package: perl5>=5.32.r0<5.33 - found =========================================================================== =================================================== ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status ===> votca-2021.2.18560 depends on shared library: libboost_program_options.so - found (/usr/local/lib/libboost_program_options.so) ===> votca-2021.2.18560 depends on shared library: libecpint.so - not found ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make[1]: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make[1]: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status ===> Installing existing package /packages/All/libecpint-1.0.7.pkg [main-amd64-default-job-05] Installing libecpint-1.0.7... [main-amd64-default-job-05] `-- Installing pugixml-1.11.4... [main-amd64-default-job-05] `-- Extracting pugixml-1.11.4: .......... done [main-amd64-default-job-05] Extracting libecpint-1.0.7: .......... done ===== Message from pugixml-1.11.4: -- ===> NOTICE: The pugixml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> votca-2021.2.18560 depends on shared library: libecpint.so - found (/usr/local/lib/libecpint.so) ===> Returning to build of votca-2021.2.18560 ===> votca-2021.2.18560 depends on shared library: libexpat.so - found (/usr/local/lib/libexpat.so) ===> votca-2021.2.18560 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> votca-2021.2.18560 depends on shared library: libgromacs_d.so - not found ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make[1]: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make[1]: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status ===> Installing existing package /packages/All/gromacs-2021.4.pkg [main-amd64-default-job-05] Installing gromacs-2021.4... [main-amd64-default-job-05] `-- Installing libICE-1.0.10,1... [main-amd64-default-job-05] `-- Extracting libICE-1.0.10,1: .......... done [main-amd64-default-job-05] `-- Installing libSM-1.2.3,1... [main-amd64-default-job-05] `-- Extracting libSM-1.2.3,1: .......... done [main-amd64-default-job-05] Extracting gromacs-2021.4: .......... done ===> votca-2021.2.18560 depends on shared library: libgromacs_d.so - found (/usr/local/lib/libgromacs_d.so) ===> Returning to build of votca-2021.2.18560 ===> votca-2021.2.18560 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> votca-2021.2.18560 depends on shared library: libint2.so - not found ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make[1]: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make[1]: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status ===> Installing existing package /packages/All/libint2-2.7.1.pkg [main-amd64-default-job-05] Installing libint2-2.7.1... [main-amd64-default-job-05] Extracting libint2-2.7.1: .......... done ===> votca-2021.2.18560 depends on shared library: libint2.so - found (/usr/local/lib/libint2.so) ===> Returning to build of votca-2021.2.18560 ===> votca-2021.2.18560 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so) ===> votca-2021.2.18560 depends on shared library: libxc.so - not found ===> Installing existing package /packages/All/libxc-5.0.0.pkg [main-amd64-default-job-05] Installing libxc-5.0.0... [main-amd64-default-job-05] Extracting libxc-5.0.0: .......... done ===> votca-2021.2.18560 depends on shared library: libxc.so - found (/usr/local/lib/libxc.so) ===> Returning to build of votca-2021.2.18560 =========================================================================== =================================================== ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc" make: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang" make: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status ===> Configuring for votca-2021.2.18560 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/votca/work/.build ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cmake" *** Error code 1 Stop. make: stopped in /usr/ports/science/votca