[package - main-arm64-default][science/helfem] Failed for helfem-g20210912_1 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Fri, 17 Dec 2021 11:52:11 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        http://ampere2.nyi.freebsd.org/data/main-arm64-default/p753e6f25c4b3_s479ea5cf2d/logs/helfem-g20210912_1.log
Build URL:      http://ampere2.nyi.freebsd.org/build.html?mastername=main-arm64-default&build=p753e6f25c4b3_s479ea5cf2d
Log:

=>> Building science/helfem
build started at Fri Dec 17 11:49:27 UTC 2021
port directory: /usr/ports/science/helfem
package name: helfem-g20210912_1
building for: FreeBSD main-arm64-default-job-11 14.0-CURRENT FreeBSD 14.0-CURRENT 1400044 arm64
maintained by: yuri@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400008
Jail OSVERSION: 1400044
Job Id: 11




!!! Jail is newer than host. (Jail: 1400044, Host: 1400008) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   helfem-g20210912_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.17.5.pkg
[main-arm64-default-job-11] Installing pkg-1.17.5...
[main-arm64-default-job-11] Extracting pkg-1.17.5: .......... done
===>   helfem-g20210912_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of helfem-g20210912_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by helfem-g20210912_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by helfem-g20210912_1 for building
=> SHA256 Checksum OK for susilehtola-HelFEM-g20210912-21461e9_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by helfem-g20210912_1 for building
===>  Extracting for helfem-g20210912_1
=> SHA256 Checksum OK for susilehtola-HelFEM-g20210912-21461e9_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for helfem-g20210912_1
===========================================================================
=======================<phase: build-depends  >============================
===>   helfem-g20210912_1 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-3.22.1.pkg
[main-arm64-default-job-11] Installing cmake-3.22.1...
[main-arm64-default-job-11] `-- Installing curl-7.80.0...
[main-arm64-default-job-11] |   `-- Installing ca_root_nss-3.71...
[main-arm64-default-job-11] |   `-- Extracting ca_root_nss-3.71: ........ done
[main-arm64-default-job-11] |   `-- Installing libnghttp2-1.46.0...
[main-arm64-default-job-11] |   `-- Extracting libnghttp2-1.46.0: .......... done
[main-arm64-default-job-11] |   `-- Installing libssh2-1.9.0_3,3...
[main-arm64-default-job-11] |   `-- Extracting libssh2-1.9.0_3,3: .......... done
<snip>
/usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/science/helfem/work/.build/CMakeFiles /wrkdirs/usr/ports/science/helfem/work/.build//CMakeFiles/progress.marks
/usr/bin/make  -f CMakeFiles/Makefile2 all
--- libhelfem/CMakeFiles/helfem.dir/all ---
--- src/CMakeFiles/legendre.dir/all ---
/usr/bin/make  -f src/CMakeFiles/legendre.dir/build.make src/CMakeFiles/legendre.dir/depend
--- libhelfem/CMakeFiles/helfem.dir/all ---
/usr/bin/make  -f libhelfem/CMakeFiles/helfem.dir/build.make libhelfem/CMakeFiles/helfem.dir/depend
--- libhelfem/CMakeFiles/helfem.dir/depend ---
--- src/CMakeFiles/legendre.dir/all ---
--- src/CMakeFiles/legendre.dir/depend ---
--- libhelfem/CMakeFiles/helfem.dir/all ---
cd /wrkdirs/usr/ports/science/helfem/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9 /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/libhelfem /wrkdirs/usr/ports/science/helfem/work/.build /wrkdirs/usr/ports/science/helfem/work/.build/libhelfem /wrkdirs/usr/ports/science/helfem/work/.build/libhelfem/CMakeFiles/helfem.dir/DependInfo.cmake
--- src/CMakeFiles/legendre.dir/all ---
cd /wrkdirs/usr/ports/science/helfem/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9 /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/src /wrkdirs/usr/ports/science/helfem/work/.build /wrkdirs/usr/ports/science/helfem/work/.build/src /wrkdirs/usr/ports/science/helfem/work/.build/src/CMakeFiles/legendre.dir/DependInfo.cmake
--- libhelfem/CMakeFiles/helfem.dir/all ---
/usr/bin/make  -f libhelfem/CMakeFiles/helfem.dir/build.make libhelfem/CMakeFiles/helfem.dir/build
--- src/CMakeFiles/legendre.dir/all ---
Scanning dependencies of target legendre
--- libhelfem/CMakeFiles/helfem.dir/all ---
--- libhelfem/CMakeFiles/helfem.dir/src/helfem.cpp.o ---
--- src/CMakeFiles/legendre.dir/all ---
/usr/bin/make  -f src/CMakeFiles/legendre.dir/build.make src/CMakeFiles/legendre.dir/build
--- src/CMakeFiles/legendre.dir/legendre/accuracy.f90.o ---
--- libhelfem/CMakeFiles/helfem.dir/all ---
[  1%] Building CXX object libhelfem/CMakeFiles/helfem.dir/src/helfem.cpp.o
cd /wrkdirs/usr/ports/science/helfem/work/.build/libhelfem && /usr/bin/c++ -Dhelfem_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/helfem/work/.build/libhelfem/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -MD -MT libhelfem/CMakeFiles/helfem.dir/src/helfem.cpp.o -MF CMakeFiles/helfem.dir/src/helfem.cpp.o.d -o CMakeFiles/helfem.dir/src/helfem.cpp.o -c /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/libhelfem/src/helfem.cpp
--- src/CMakeFiles/legendre.dir/all ---
[  2%] Building Fortran object src/CMakeFiles/legendre.dir/legendre/accuracy.f90.o
cd /wrkdirs/usr/ports/science/helfem/work/.build/src && /usr/local/bin/gfortran10 -Dlegendre_EXPORTS -I/usr/local/include -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -DNDEBUG -O3 -fPIC -c /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/src/legendre/accuracy.f90 -o CMakeFiles/legendre.dir/legendre/accuracy.f90.o
--- src/CMakeFiles/legendre.dir/legendre/input_output.f90.o ---
[  3%] Building Fortran object src/CMakeFiles/legendre.dir/legendre/input_output.f90.o
cd /wrkdirs/usr/ports/science/helfem/work/.build/src && /usr/local/bin/gfortran10 -Dlegendre_EXPORTS -I/usr/local/include -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -DNDEBUG -O3 -fPIC -c /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/src/legendre/input_output.f90 -o CMakeFiles/legendre.dir/legendre/input_output.f90.o
--- src/CMakeFiles/legendre.dir/legendre/Matrix_Print.f90.o ---
[  4%] Building Fortran object src/CMakeFiles/legendre.dir/legendre/Matrix_Print.f90.o
cd /wrkdirs/usr/ports/science/helfem/work/.build/src && /usr/local/bin/gfortran10 -Dlegendre_EXPORTS -I/usr/local/include -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -DNDEBUG -O3 -fPIC -c /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/src/legendre/Matrix_Print.f90 -o CMakeFiles/legendre.dir/legendre/Matrix_Print.f90.o
--- src/CMakeFiles/legendre.dir/legendre/itoc.f90.o ---
[  5%] Building Fortran object src/CMakeFiles/legendre.dir/legendre/itoc.f90.o
cd /wrkdirs/usr/ports/science/helfem/work/.build/src && /usr/local/bin/gfortran10 -Dlegendre_EXPORTS -I/usr/local/include -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -DNDEBUG -O3 -fPIC -c /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/src/legendre/itoc.f90 -o CMakeFiles/legendre.dir/legendre/itoc.f90.o
--- src/CMakeFiles/legendre.dir/general/legendretable.cpp.o ---
[  7%] Building CXX object src/CMakeFiles/legendre.dir/general/legendretable.cpp.o
cd /wrkdirs/usr/ports/science/helfem/work/.build/src && /usr/bin/c++ -Dlegendre_EXPORTS -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -MD -MT src/CMakeFiles/legendre.dir/general/legendretable.cpp.o -MF CMakeFiles/legendre.dir/general/legendretable.cpp.o.d -o CMakeFiles/legendre.dir/general/legendretable.cpp.o -c /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/src/general/legendretable.cpp
--- libhelfem/CMakeFiles/helfem.dir/all ---
--- libhelfem/CMakeFiles/helfem.dir/src/grid.cpp.o ---
[  8%] Building CXX object libhelfem/CMakeFiles/helfem.dir/src/grid.cpp.o
cd /wrkdirs/usr/ports/science/helfem/work/.build/libhelfem && /usr/bin/c++ -Dhelfem_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/helfem/work/.build/libhelfem/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -MD -MT libhelfem/CMakeFiles/helfem.dir/src/grid.cpp.o -MF CMakeFiles/helfem.dir/src/grid.cpp.o.d -o CMakeFiles/helfem.dir/src/grid.cpp.o -c /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/libhelfem/src/grid.cpp
--- src/CMakeFiles/legendre.dir/all ---
--- src/CMakeFiles/legendre.dir/accuracy.mod.stamp ---
/usr/local/bin/cmake -E cmake_copy_f90_mod src/accuracy.mod src/CMakeFiles/legendre.dir/accuracy.mod.stamp GNU
--- src/CMakeFiles/legendre.dir/input_output.mod.stamp ---
/usr/local/bin/cmake -E cmake_copy_f90_mod src/input_output.mod src/CMakeFiles/legendre.dir/input_output.mod.stamp GNU
--- src/CMakeFiles/legendre.dir/matrix_print.mod.stamp ---
/usr/local/bin/cmake -E cmake_copy_f90_mod src/matrix_print.mod src/CMakeFiles/legendre.dir/matrix_print.mod.stamp GNU
--- src/CMakeFiles/legendre.dir/legendre/accuracy.f90.o.provides.build ---
/usr/local/bin/cmake -E touch src/CMakeFiles/legendre.dir/legendre/accuracy.f90.o.provides.build
--- src/CMakeFiles/legendre.dir/legendre/Data_Module.f90.o ---
[  9%] Building Fortran object src/CMakeFiles/legendre.dir/legendre/Data_Module.f90.o
cd /wrkdirs/usr/ports/science/helfem/work/.build/src && /usr/local/bin/gfortran10 -Dlegendre_EXPORTS -I/usr/local/include -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -DNDEBUG -O3 -fPIC -c /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/src/legendre/Data_Module.f90 -o CMakeFiles/legendre.dir/legendre/Data_Module.f90.o
--- src/CMakeFiles/legendre.dir/legendre/input_output.f90.o.provides.build ---
/usr/local/bin/cmake -E touch src/CMakeFiles/legendre.dir/legendre/input_output.f90.o.provides.build
--- src/CMakeFiles/legendre.dir/legendre/Ass_Leg_Poly.f90.o ---
[ 10%] Building Fortran object src/CMakeFiles/legendre.dir/legendre/Ass_Leg_Poly.f90.o
cd /wrkdirs/usr/ports/science/helfem/work/.build/src && /usr/local/bin/gfortran10 -Dlegendre_EXPORTS -I/usr/local/include -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -DNDEBUG -O3 -fPIC -c /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/src/legendre/Ass_Leg_Poly.f90 -o CMakeFiles/legendre.dir/legendre/Ass_Leg_Poly.f90.o
--- src/CMakeFiles/legendre.dir/legendre/Matrix_Print.f90.o.provides.build ---
/usr/local/bin/cmake -E touch src/CMakeFiles/legendre.dir/legendre/Matrix_Print.f90.o.provides.build
--- src/CMakeFiles/legendre.dir/data_module.mod.stamp ---
/usr/local/bin/cmake -E cmake_copy_f90_mod src/data_module.mod src/CMakeFiles/legendre.dir/data_module.mod.stamp GNU
--- src/CMakeFiles/legendre.dir/ass_leg_poly.mod.stamp ---
/usr/local/bin/cmake -E cmake_copy_f90_mod src/ass_leg_poly.mod src/CMakeFiles/legendre.dir/ass_leg_poly.mod.stamp GNU
--- src/CMakeFiles/legendre.dir/legendre/Data_Module.f90.o.provides.build ---
/usr/local/bin/cmake -E touch src/CMakeFiles/legendre.dir/legendre/Data_Module.f90.o.provides.build
--- src/CMakeFiles/legendre.dir/legendre/Prolate_Functions.f90.o ---
[ 11%] Building Fortran object src/CMakeFiles/legendre.dir/legendre/Prolate_Functions.f90.o
cd /wrkdirs/usr/ports/science/helfem/work/.build/src && /usr/local/bin/gfortran10 -Dlegendre_EXPORTS -I/usr/local/include -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -DNDEBUG -O3 -fPIC -c /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/src/legendre/Prolate_Functions.f90 -o CMakeFiles/legendre.dir/legendre/Prolate_Functions.f90.o
--- src/CMakeFiles/legendre.dir/legendre/Special_Functions.f90.o ---
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cd /wrkdirs/usr/ports/science/helfem/work/.build/src && /usr/local/bin/gfortran10 -Dlegendre_EXPORTS -I/usr/local/include -O -Wl,-rpath=/usr/local/lib/gcc10 -O3 -DNDEBUG -O3 -fPIC -c /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/src/legendre/Special_Functions.f90 -o CMakeFiles/legendre.dir/legendre/Special_Functions.f90.o
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 .cpp.o   -L/usr/local/lib/gcc10/gcc/aarch64-portbld-freebsd14.0/10.3.0  -L/usr/local/aarch64-portbld-freebsd14.0/lib  -L/usr/local/lib/gcc10  -Wl,-rpath,/usr/local/lib: /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so /usr/local/lib/libarmadillo.so /usr/local/lib/libhdf5_cpp.so /usr/local/lib/libhdf5.so /usr/local/lib/libsz.so -lz -ldl -lm /usr/local/lib/libxc.so -lgfortran 
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--- libhelfem/CMakeFiles/helfem.dir/src/chebyshev.cpp.o ---
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--- libhelfem/CMakeFiles/helfem.dir/src/erfc_expn.cpp.o ---
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cd /wrkdirs/usr/ports/science/helfem/work/.build/libhelfem && /usr/bin/c++ -Dhelfem_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/helfem/work/.build/libhelfem/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -MD -MT libhelfem/CMakeFiles/helfem.dir/src/polynomial_basis.cpp.o -MF CMakeFiles/helfem.dir/src/polynomial_basis.cpp.o.d -o CMakeFiles/helfem.dir/src/polynomial_basis.cpp.o -c /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/libhelfem/src/polynomial_basis.cpp
--- libhelfem/CMakeFiles/helfem.dir/src/quadrature.cpp.o ---
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cd /wrkdirs/usr/ports/science/helfem/work/.build/libhelfem && /usr/bin/c++ -Dhelfem_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/helfem/work/.build/libhelfem/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -MD -MT libhelfem/CMakeFiles/helfem.dir/src/quadrature.cpp.o -MF CMakeFiles/helfem.dir/src/quadrature.cpp.o.d -o CMakeFiles/helfem.dir/src/quadrature.cpp.o -c /wrkdirs/usr/ports/science/helfem/work/HelFEM-21461e9/libhelfem/src/quadrature.cpp
--- libhelfem/CMakeFiles/helfem.dir/src/ModelPotential.cpp.o ---
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/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc10  -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong -shared -Wl,-soname,libhelfem.so -o libhelfem.so CMakeFiles/helfem.dir/src/helfem.cpp.o CMakeFiles/helfem.dir/src/grid.cpp.o CMakeFiles/helfem.dir/src/chebyshev.cpp.o CMakeFiles/helfem.dir/src/lobatto.cpp.o CMakeFiles/helfem.dir/src/utils.cpp.o CMakeFiles/helfem.dir/src/erfc_expn.cpp.o CMakeFiles/helfem.dir/src/polynomial.cpp.o CMakeFiles/helfem.dir/src/polynomial_basis.cpp.o CMakeFiles/helfem.dir/src/quadrature.cpp.o CMakeFiles/helfem.dir/src/ModelPotential.cpp.o CMakeFiles/helfem.dir/src/RadialPotential.cpp.o CMakeFiles/helfem.dir/src/GaussianNucleus.cpp.o CMakeFiles/helfem.dir/src/HollowNucleus.cpp.o CMakeFiles/helfem.dir/src/PointNucleus.cpp.o CMakeFiles/helfem.dir/src/SphericalNucleus.cpp.o CMakeFiles/helfem.dir/src/RadialBasis.cpp.o  -W
 l,-rpath,/usr/local/lib: /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so /usr/local/lib/libarmadillo.so /usr/local/lib/libhdf5_cpp.so /usr/local/lib/libhdf5.so /usr/local/lib/libsz.so -lz -ldl -lm /usr/local/lib/libxc.so 
/usr/local/bin/ld: CMakeFiles/helfem.dir/src/erfc_expn.cpp.o: in function `helfem::atomic::erfc_expn::Phi_general(unsigned int, double, double)':
erfc_expn.cpp:(.text+0x58): undefined reference to `std::__1::enable_if<is_move_constructible<double>::value&&is_move_assignable<double>::value, void>::type std::__1::swap<double>(double&, double&)'
/usr/local/bin/ld: CMakeFiles/helfem.dir/src/erfc_expn.cpp.o: in function `helfem::atomic::erfc_expn::Phi_short(unsigned int, double, double)':
erfc_expn.cpp:(.text+0x728): undefined reference to `std::__1::enable_if<is_move_constructible<double>::value&&is_move_assignable<double>::value, void>::type std::__1::swap<double>(double&, double&)'
/usr/local/bin/ld: CMakeFiles/helfem.dir/src/erfc_expn.cpp.o: in function `helfem::atomic::erfc_expn::Phi(unsigned int, double, double)':
erfc_expn.cpp:(.text+0x864): undefined reference to `std::__1::enable_if<is_move_constructible<double>::value&&is_move_assignable<double>::value, void>::type std::__1::swap<double>(double&, double&)'
/usr/local/bin/ld: libhelfem.so: hidden symbol `_ZNSt3__14swapIdEENS_9enable_ifIXaasr21is_move_constructibleIT_EE5valuesr18is_move_assignableIS2_EE5valueEvE4typeERS2_S5_' isn't defined
/usr/local/bin/ld: final link failed: bad value
c++: error: linker command failed with exit code 1 (use -v to see invocation)
*** [libhelfem/libhelfem.so] Error code 1

make[3]: stopped in /wrkdirs/usr/ports/science/helfem/work/.build
1 error

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make[2]: stopped in /wrkdirs/usr/ports/science/helfem/work/.build
1 error

make[2]: stopped in /wrkdirs/usr/ports/science/helfem/work/.build
*** [all] Error code 2

make[1]: stopped in /wrkdirs/usr/ports/science/helfem/work/.build
1 error

make[1]: stopped in /wrkdirs/usr/ports/science/helfem/work/.build
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/science/helfem