[package - main-riscv64-default][science/nest] Failed for nest-3.1 in configure
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Date: Tue, 07 Dec 2021 20:11:20 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy7.nyi.freebsd.org/data/main-riscv64-default/p7539e33f88ff_s169b368a62/logs/nest-3.1.log
Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=main-riscv64-default&build=p7539e33f88ff_s169b368a62
Log:
=>> Building science/nest
build started at Tue Dec 7 20:09:40 UTC 2021
port directory: /usr/ports/science/nest
package name: nest-3.1
building for: FreeBSD main-riscv64-default-job-09 14.0-CURRENT FreeBSD 14.0-CURRENT 1400043 riscv
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400008
Jail OSVERSION: 1400043
Job Id: 09
!!! Jail is newer than host. (Jail: 1400043, Host: 1400008) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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---Begin OPTIONS List---
===> The following configuration options are available for nest-3.1:
DOCS=on: Build and/or install documentation
PYTHON=on: Python bindings or support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
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--CONFIGURE_ARGS--
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--CONFIGURE_ENV--
PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/nest/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/nest/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/nest/work/.cache HOME=/wrkdirs/usr/ports/science/nest/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/nest/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--End PLIST_SUB--
--SUB_LIST--
DOCS="" NO_DOCS="@comment " PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/nest DOCSDIR=/usr/local/share/doc/nest EXAMPLESDIR=/usr/local/share/examples/nest WWWDIR=/usr/local/www/nest ETCDIR=/usr/local/etc/nest
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> nest-3.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5.pkg
pkg-static: Warning: Major OS version upgrade detected. Running "pkg bootstrap -f" recommended
[main-riscv64-default-job-09] Installing pkg-1.17.5...
[main-riscv64-default-job-09] Extracting pkg-1.17.5: .......... done
===> nest-3.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of nest-3.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
<snip>
===> nest-3.1 depends on shared library: libgsl.so - not found
===> Installing existing package /packages/All/gsl-2.7.pkg
pkg-static: Warning: Major OS version upgrade detected. Running "pkg bootstrap -f" recommended
[main-riscv64-default-job-09] Installing gsl-2.7...
[main-riscv64-default-job-09] Extracting gsl-2.7: .......... done
===> nest-3.1 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so)
===> Returning to build of nest-3.1
===> nest-3.1 depends on shared library: libltdl.so - not found
===> Installing existing package /packages/All/libltdl-2.4.6.pkg
pkg-static: Warning: Major OS version upgrade detected. Running "pkg bootstrap -f" recommended
[main-riscv64-default-job-09] Installing libltdl-2.4.6...
[main-riscv64-default-job-09] Extracting libltdl-2.4.6: .......... done
===> nest-3.1 depends on shared library: libltdl.so - found (/usr/local/lib/libltdl.so)
===> Returning to build of nest-3.1
===> nest-3.1 depends on shared library: libreadline.so.8 - found (/usr/local/lib/libreadline.so.8)
===========================================================================
=======================<phase: configure >============================
===> Configuring for nest-3.1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/nest/work/.build
-- The CXX compiler identification is Clang 13.0.0
-- The C compiler identification is Clang 13.0.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /nxb-bin/usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Looking for include file inttypes.h
-- Looking for include file inttypes.h - found
-- Looking for include file mach-o/dyld.h
-- Looking for include file mach-o/dyld.h - not found
-- Looking for include file mach/mach.h
-- Looking for include file mach/mach.h - not found
-- Looking for include file memory.h
-- Looking for include file memory.h - found
-- Looking for include file stdint.h
-- Looking for include file stdint.h - found
-- Looking for include file sys/types.h
-- Looking for include file sys/types.h - found
-- Looking for C++ include istream
-- Looking for C++ include istream - found
-- Looking for C++ include ostream
-- Looking for C++ include ostream - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of long long
-- Check size of long long - done
-- Check size of u_int16_t
-- Check size of u_int16_t - done
-- Check size of uint16_t
-- Check size of uint16_t - done
-- Check size of u_int64_t
-- Check size of u_int64_t - done
-- Check size of uint64_t
-- Check size of uint64_t - done
-- Looking for NAN
-- Looking for NAN - found
-- Looking for isnan
-- Looking for isnan - found
-- Looking for M_E
-- Looking for M_E - found
-- Looking for M_PI
-- Looking for M_PI - found
-- Looking for expm1
-- Looking for expm1 - not found
-- Host triple: riscv64-pc-freebsd
-- Target triple: riscv64-pc-freebsd
-- Found Python: /usr/local/bin/python3.8 (found suitable version "3.8.12", minimum required is "3.8") found components: Interpreter Development Development.Module Development.Embed
-- Found Cython: /usr/local/bin/cython-3.8 (found suitable version "0.29.24", minimum required is "0.28.3")
-- Found LTDL: /usr/local/lib/libltdl.so
-- Found Readline: /usr/local/lib/libreadline.so (found version "8.1")
-- Found PkgConfig: pkgconf (found version "1.8.0")
-- Found GSL: /usr/local/include (found version "2.7")
-- Found OpenMP_C: -fopenmp=libomp (found version "5.0")
-- Found OpenMP_CXX: -fopenmp=libomp (found version "5.0")
-- Found OpenMP: TRUE (found version "5.0")
-- Found Boost: /usr/local/include (found suitable version "1.72.0", minimum required is "1.69.0")
-- Check the abort exitcode.
-- Check the abort exitcode. 134
-- Check the segmentation fault exitcode.
-- Check the segmentation fault exitcode. 139
-- Check whether the compiler ignores cmath makros.
-- Check whether the compiler ignores cmath makros. OFF
-- Check whether the compiler does NOT include <*.h> headers ISO conformant.
-- Check whether the compiler does NOT include <*.h> headers ISO conformant. OFF
-- Check whether the compiler respects symbolic signal names in signal.h.
-- Check whether the compiler respects symbolic signal names in signal.h. OFF
-- Check static template member declaration.
-- Check static template member declaration. OFF
-- Check for STL vector capacity base unity.
-- Check for STL vector capacity base unity. ON
-- Check for STL vector capacity doubling strategy.
-- Check for STL vector capacity doubling strategy. ON
-- Check whether the compiler fails with ICE.
-- Check whether the compiler fails with ICE. OFF
-- Check if ::nan is available from cmath.
-- Check if ::nan is available from cmath. ON
-- Check if ::isnan is available from cmath.
-- Check if ::isnan is available from cmath. ON
-- Check if Random123 generators work.
CMake Error at cmake/CheckExtraCompilerFeatures.cmake:262 (message):
message called with incorrect number of arguments
Call Stack (most recent call first):
CMakeLists.txt:181 (nest_check_random123)
-- Check if Random123 generators work. OFF
-- NEST version: nest-3.1
--------------------------------------------------------------------------------
NEST Configuration Summary
--------------------------------------------------------------------------------
Build type : Release
Target System : FreeBSD
Cross Compiling : FALSE
C compiler : Clang 13.0.0 (/nxb-bin/usr/bin/cc)
C compiler flags : -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -O2 -Wall -fopenmp=libomp -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing
C++ compiler : Clang 13.0.0 (/nxb-bin/usr/bin/c++)
C++ compiler flags : -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -Wall -fopenmp=libomp -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing
Build dynamic : ON
Built-in modules : models
User modules : None
Python bindings : Yes (Python 3.8.12: /usr/local/bin/python3.8)
Includes : /usr/local/include/python3.8
Libraries : /usr/local/lib/libpython3.8.so
Cython bindings : Yes (Cython 0.29.24: /usr/local/bin/cython-3.8)
MPI4PY header : NO
Use threading : Yes (OpenMP: -fopenmp=libomp)
Use GSL : Yes (GSL 2.7)
Includes : /usr/local/include
Libraries : /usr/local/lib/libgsl.so;/usr/local/lib/libgslcblas.so
Use Readline : Yes (GNU Readline 8.1)
Includes : /usr/local/include
Libraries : /usr/local/lib/libreadline.so;/usr/lib/libncurses.so
Use libltdl : Yes (LTDL )
Includes : /usr/local/include
Libraries : /usr/local/lib/libltdl.so
Use doxygen : No
Use MPI : No
Detailed timers : No
Use MUSIC : No
Use libneurosim : No
Use Boost : Yes (Boost 1.72.0)
Includes : /usr/local/include
Libraries :
Use SIONlib : No
--------------------------------------------------------------------------------
The NEST executable will be installed to:
/usr/local/bin/
NEST dynamic libraries and user modules will be installed to:
/usr/local/lib/nest/
Documentation and examples will be installed to:
/usr/local/share/doc/nest/
PyNEST will be installed to:
/usr/local/lib/python3.8/site-packages
To set necessary environment variables, add the following line
to your ~/.bashrc :
source /usr/local/bin/nest_vars.sh
--------------------------------------------------------------------------------
You can now build and install NEST with
make
make install
make installcheck
If you experience problems with the installation or the use of NEST,
please see https://www.nest-simulator.org/frequently_asked_questions
or go to https://www.nest-simulator.org/community to find out how to
join the user mailing list.
-- Configuring incomplete, errors occurred!
See also "/wrkdirs/usr/ports/science/nest/work/.build/CMakeFiles/CMakeOutput.log".
See also "/wrkdirs/usr/ports/science/nest/work/.build/CMakeFiles/CMakeError.log".
*** Error code 1
Stop.
make: stopped in /usr/ports/science/nest