From nobody Thu Dec 02 04:42:31 2021 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 63FBF18C7DF4 for ; Thu, 2 Dec 2021 04:42:32 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4J4Nbr0zDLz4RB9; Thu, 2 Dec 2021 04:42:32 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy18.nyi.freebsd.org (beefy18.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:21]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 00AF8172BB; Thu, 2 Dec 2021 04:42:32 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy18.nyi.freebsd.org (localhost [127.0.0.1]) by beefy18.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 1B24gVYa054090; Thu, 2 Dec 2021 04:42:31 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy18.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 1B24gViE054089; Thu, 2 Dec 2021 04:42:31 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 2 Dec 2021 04:42:31 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202112020442.1B24gViE054089@beefy18.nyi.freebsd.org> To: yuri@FreeBSD.org Subject: [package - main-amd64-default][biology/jalview] Failed for jalview-2.11.1.4 in build Cc: pkg-fallout@FreeBSD.org ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1638420152; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=NhQEJBS6seLZjjbQqq7cvNrokvbc0R/RMGRABoX7EOU=; b=lZgfquyggeqbiNhqMkBmiAu+a+lCI71ku6wgYJ2527ObDFX85NlrHDC+6cFuSSbyIVkEXW /4t1bUcJJYVT7ex99jeu+a7WIW6cX+xNShS26lMkaUTVaegsy9XyPbxeErPd1pR+rma36q +7YEkturbIR4LlC0flxQE+YadwDOTVVcLopytck7abj+f0U4rT+HFLP8BkqRPkgJyvnJ+J wK5P+x/81+DTEIhKAFi1I91CDBW6qEp3Nk+P6x5TeIL8rzzSla4+4ytaXhMFG619C1O588 rcrRyv/B2k6JKvahJknBcMe5fnAUcA0fvu6dZhy+XUsFT79EAMpOY3wg+sdCvw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1638420152; a=rsa-sha256; cv=none; b=Z2zPMDKb+wApnYdCYVp6JyOgCHy/ZTzc3kBHKaCwg1GnQ7eGOPp0Aq9dfRQTyIXq3El7jh O9FRzZRVPDFnLcVM17HvhNTbQwtNSvrMROdmmbg0ZsjHMJTjVNI5jJ/e0E+kv3VQsvcWXS cJ6yoLCY1IXS8JziWxTNB2M7UqToducugA2yVeuOeKth/p2LoeZMoUKnCSOROkUYA18G1P k+BhlUZcWUqR/rnFJDsPQyD5hZVuv2fwfAhvT+KlnPv0UbgyNdg8itHRFla1xOoZsPG8SK LJywFkV/OqWA1gfCDyx6uU1mWq5jlHisdbuG9DiXiar7oJppiMwy4S3U/uua2Q== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: http://beefy18.nyi.freebsd.org/data/main-amd64-default/pb8c4bfe660b3_s610d908f8a/logs/jalview-2.11.1.4.log Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=main-amd64-default&build=pb8c4bfe660b3_s610d908f8a Log: =>> Building biology/jalview build started at Thu Dec 2 04:41:18 UTC 2021 port directory: /usr/ports/biology/jalview package name: jalview-2.11.1.4 building for: FreeBSD main-amd64-default-job-10 14.0-CURRENT FreeBSD 14.0-CURRENT 1400043 amd64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400042 Jail OSVERSION: 1400043 Job Id: 10 !!! Jail is newer than host. (Jail: 1400043, Host: 1400042) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400043 UNAME_v=FreeBSD 14.0-CURRENT 1400043 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/jalview/work/.cache HOME=/wrkdirs/usr/ports/biology/jalview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/jalview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/jalview/work/.cache HOME=/wrkdirs/usr/ports/biology/jalview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/jalview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/jalview" EXAMPLESDIR="share/examples/jalview" DATADIR="share/java/jalview" WWWDIR="www/jalview" ETCDIR="etc/jalview" --End PLIST_SUB-- --SUB_LIST-- JAVA=/usr/local/openjdk11/bin/java JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="11" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/java/jalview DOCSDIR=/usr/local/share/doc/jalview EXAMPLESDIR=/usr/local/share/examples/jalview WWWDIR=/usr/local/www/jalview ETCDIR=/usr/local/etc/jalview --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400043 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> jalview-2.11.1.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.5.pkg [main-amd64-default-job-10] Installing pkg-1.17.5... [main-amd64-default-job-10] Extracting pkg-1.17.5: .......... done ===> jalview-2.11.1.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of jalview-2.11.1.4 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by jalview-2.11.1.4 for building =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by jalview-2.11.1.4 for building => SHA256 Checksum OK for jalview_2_11_1_4.tar.gz. => SHA256 Checksum OK for jalview-2.11.1.4-deps.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by jalview-2.11.1.4 for building ===> Extracting for jalview-2.11.1.4 => SHA256 Checksum OK for jalview_2_11_1_4.tar.gz. => SHA256 Checksum OK for jalview-2.11.1.4-deps.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for jalview-2.11.1.4 =========================================================================== =================================================== ===> jalview-2.11.1.4 depends on executable: gradle - not found ===> Installing existing package /packages/All/gradle6-6.9.pkg [main-amd64-default-job-10] Installing gradle6-6.9... [main-amd64-default-job-10] `-- Installing openjdk8-8.312.07.1... [main-amd64-default-job-10] | `-- Installing alsa-lib-1.2.2_1... [main-amd64-default-job-10] | `-- Extracting alsa-lib-1.2.2_1: .......... done [main-amd64-default-job-10] | `-- Installing dejavu-2.37_1... How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from libinotify-20180201_2: -- Libinotify functionality on FreeBSD is missing support for - detecting a file being moved into or out of a directory within the same filesystem - certain modifications to a symbolic link (rather than the file it points to.) in addition to the known limitations on all platforms using kqueue(2) where various open and close notifications are unimplemented. This means the following regression tests will fail: Directory notifications: IN_MOVED_FROM IN_MOVED_TO Open/close notifications: IN_OPEN IN_CLOSE_NOWRITE IN_CLOSE_WRITE Symbolic Link notifications: IN_DONT_FOLLOW IN_ATTRIB IN_MOVE_SELF IN_DELETE_SELF Kernel patches to address the missing directory and symbolic link notifications are available from: https://github.com/libinotify-kqueue/libinotify-kqueue/tree/master/patches You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from openjdk8-8.312.07.1: -- This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ===> jalview-2.11.1.4 depends on executable: gradle - found ===> Returning to build of jalview-2.11.1.4 ===> jalview-2.11.1.4 depends on file: /usr/local/openjdk11/bin/java - not found ===> Installing existing package /packages/All/openjdk11-11.0.13+8.1.pkg [main-amd64-default-job-10] Installing openjdk11-11.0.13+8.1... [main-amd64-default-job-10] `-- Installing jpeg-turbo-2.1.1_1... [main-amd64-default-job-10] `-- Extracting jpeg-turbo-2.1.1_1: .......... done [main-amd64-default-job-10] `-- Installing lcms2-2.12... [main-amd64-default-job-10] | `-- Installing tiff-4.3.0... [main-amd64-default-job-10] | | `-- Installing jbigkit-2.1_1... [main-amd64-default-job-10] | | `-- Extracting jbigkit-2.1_1: .......... done [main-amd64-default-job-10] | `-- Extracting tiff-4.3.0: .......... done [main-amd64-default-job-10] `-- Extracting lcms2-2.12: .......... done [main-amd64-default-job-10] `-- Installing libXrandr-1.5.2... [main-amd64-default-job-10] `-- Extracting libXrandr-1.5.2: .......... done [main-amd64-default-job-10] `-- Installing xorg-fonts-truetype-7.7_1... [main-amd64-default-job-10] | `-- Installing encodings-1.0.5,1... [main-amd64-default-job-10] | `-- Extracting encodings-1.0.5,1: .......... done [main-amd64-default-job-10] | `-- Installing font-bh-ttf-1.0.3_4... [main-amd64-default-job-10] | `-- Extracting font-bh-ttf-1.0.3_4: .......... done [main-amd64-default-job-10] | `-- Installing font-misc-ethiopic-1.0.4... [main-amd64-default-job-10] | `-- Extracting font-misc-ethiopic-1.0.4: ...... done [main-amd64-default-job-10] | `-- Installing font-misc-meltho-1.0.3_4... [main-amd64-default-job-10] | `-- Extracting font-misc-meltho-1.0.3_4: .......... done [main-amd64-default-job-10] Extracting openjdk11-11.0.13+8.1: .......... done ===== Message from openjdk11-11.0.13+8.1: -- This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ===> jalview-2.11.1.4 depends on file: /usr/local/openjdk11/bin/java - found ===> Returning to build of jalview-2.11.1.4 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for jalview-2.11.1.4 =========================================================================== =================================================== ===> Building for jalview-2.11.1.4 Welcome to Gradle 6.9! Here are the highlights of this release: - This is a small backport release. - Java 16 can be used to compile when used with Java toolchains - Dynamic versions can be used within plugin declarations - Native support for Apple Silicon processors For more details see https://docs.gradle.org/6.9/release-notes.html Starting a Gradle Daemon (subsequent builds will be faster) > Configure project : HEADLESS BUILD Using a LOCAL profile. > Task :compileJava Setting target compatibility to 11 /wrkdirs/usr/ports/biology/jalview/work/jalview/src/jalview/ws/dbsources/EmblXmlSource.java:73: warning: [dep-ann] deprecated item is not annotated with @Deprecated public abstract class EmblXmlSource extends EbiFileRetrievedProxy ^ Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning The message received from the daemon indicates that the daemon has disappeared. Build request sent: Build{id=a0c042ec-94bb-46f2-8d17-8612ca86c716, currentDir=/wrkdirs/usr/ports/biology/jalview/work/jalview} Attempting to read last messages from the daemon log... Daemon pid: 51620 log file: /wrkdirs/usr/ports/biology/jalview/work/gradle-jalview/daemon/6.9/daemon-51620.out.log ----- Last 20 lines from daemon log file - daemon-51620.out.log ----- 2021-12-02T04:42:06.300+0000 [DEBUG] [org.gradle.launcher.daemon.server.SynchronizedDispatchConnection] thread 30: received class org.gradle.launcher.daemon.protocol.CloseInput 2021-12-02T04:42:06.300+0000 [DEBUG] [org.gradle.launcher.daemon.server.DefaultDaemonConnection] thread 30: Received IO message from client: org.gradle.launcher.daemon.protocol.CloseInput@66c11c9 2021-12-02T04:42:06.304+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.LogToClient] About to start relaying all logs to the client via the connection. 2021-12-02T04:42:06.305+0000 [INFO] [org.gradle.launcher.daemon.server.exec.LogToClient] The client will now receive all logging from the daemon (pid: 51620). The daemon log file: /wrkdirs/usr/ports/biology/jalview/work/gradle-jalview/daemon/6.9/daemon-51620.out.log 2021-12-02T04:42:06.308+0000 [INFO] [org.gradle.launcher.daemon.server.exec.LogAndCheckHealth] Starting build in new daemon [memory: 512 MiB] 2021-12-02T04:42:06.310+0000 [INFO] [org.gradle.launcher.daemon.server.exec.ForwardClientInput] Closing daemon's stdin at end of input. 2021-12-02T04:42:06.311+0000 [INFO] [org.gradle.launcher.daemon.server.exec.ForwardClientInput] The daemon will no longer process any standard input. 2021-12-02T04:42:06.317+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.ExecuteBuild] The daemon has started executing the build. 2021-12-02T04:42:06.318+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.ExecuteBuild] Executing build with daemon context: DefaultDaemonContext[uid=752bd8b2-da36-4c6c-beae-66e7c7c12636,javaHome=/usr/local/openjdk11,daemonRegistryDir=/wrkdirs/usr/ports/biology/jalview/work/gradle-jalview/daemon,pid=51620,idleTimeout=10800000,priority=NORMAL,daemonOpts=--add-opens,java.base/java.util=ALL-UNNAMED,--add-opens,java.base/java.lang=ALL-UNNAMED,--add-opens,java.base/java.lang.invoke=ALL-UNNAMED,--add-opens,java.prefs/java.util.prefs=ALL-UNNAMED,-XX:MaxMetaspaceSize=256m,-XX:+HeapDumpOnOutOfMemoryError,-Xms256m,-Xmx512m,-Dfile.encoding=UTF-8,-Duser.country=US,-Duser.language=en,-Duser.variant] HEADLESS BUILD Using a LOCAL profile. Setting target compatibility to 11 /wrkdirs/usr/ports/biology/jalview/work/jalview/src/jalview/ws/dbsources/EmblXmlSource.java:73: warning: [dep-ann] deprecated item is not annotated with @Deprecated public abstract class EmblXmlSource extends EbiFileRetrievedProxy ^ Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning ----- End of the daemon log ----- JVM crash log found: file:///wrkdirs/usr/ports/biology/jalview/work/jalview/hs_err_pid51620.log FAILURE: Build failed with an exception. * What went wrong: Gradle build daemon disappeared unexpectedly (it may have been killed or may have crashed) * Try: Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights. * Get more help at https://help.gradle.org *** Error code 1 Stop. make: stopped in /usr/ports/biology/jalview