[package - main-amd64-default][math/R-cran-pbkrtest] Failed for R-cran-pbkrtest-0.5.1 in stage/runaway
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Date: Thu, 05 Aug 2021 06:01:19 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: tota@FreeBSD.org Log URL: http://beefy18.nyi.freebsd.org/data/main-amd64-default/p82f29b7d787d_sf3a3b06121/logs/R-cran-pbkrtest-0.5.1.log Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=main-amd64-default&build=p82f29b7d787d_sf3a3b06121 Log: =>> Building math/R-cran-pbkrtest build started at Thu Aug 5 03:48:39 UTC 2021 port directory: /usr/ports/math/R-cran-pbkrtest package name: R-cran-pbkrtest-0.5.1 building for: FreeBSD main-amd64-default-job-13 14.0-CURRENT FreeBSD 14.0-CURRENT 1400028 amd64 maintained by: tota@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400008 Jail OSVERSION: 1400028 Job Id: 13 !!! Jail is newer than host. (Jail: 1400028, Host: 1400008) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1400028 UNAME_v=FreeBSD 14.0-CURRENT 1400028 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- tota@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-pbkrtest/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-pbkrtest/work HOME=/wrkdirs/usr/ports/math/R-cran-pbkrtest/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-pbkrtest/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-pbkrtest/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-pbkrtest/work HOME=/wrkdirs/usr/ports/math/R-cran-pbkrtest/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-pbkrtest/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/pbkrtest OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pbkrtest" EXAMPLESDIR="share/examples/pbkrtest" DATADIR="share/pbkrtest" WWWDIR="www/pbkrtest" ETCDIR="etc/pbkrtest" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pbkrtest DOCSDIR=/usr/local/share/doc/pbkrtest EXAMPLESDIR=/usr/local/share/examples/pbkrtest WWWDIR=/usr/local/www/pbkrtest ETCDIR=/usr/local/etc/pbkrtest --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400028 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2+ accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-pbkrtest-0.5.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.1.pkg [main-amd64-default-job-13] Installing pkg-1.17.1... [main-amd64-default-job-13] Extracting pkg-1.17.1: .......... done ===> R-cran-pbkrtest-0.5.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-pbkrtest-0.5.1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by R-cran-pbkrtest-0.5.1 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by R-cran-pbkrtest-0.5.1 for building => SHA256 Checksum OK for pbkrtest_0.5.1.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by R-cran-pbkrtest-0.5.1 for building ===> Extracting for R-cran-pbkrtest-0.5.1 => SHA256 Checksum OK for pbkrtest_0.5.1.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-pbkrtest-0.5.1 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-lme4>=1.1.10 - not found ===> Installing existing package /packages/All/R-cran-lme4-1.1.27.1.pkg [main-amd64-default-job-13] Installing R-cran-lme4-1.1.27.1... [main-amd64-default-job-13] `-- Installing R-4.1.0... [main-amd64-default-job-13] | `-- Installing cairo-1.17.4,3... [main-amd64-default-job-13] | | `-- Installing fontconfig-2.13.93_1,1... [main-amd64-default-job-13] | | `-- Installing expat-2.4.1... [main-amd64-default-job-13] | | `-- Extracting expat-2.4.1: .......... done [main-amd64-default-job-13] | | `-- Installing freetype2-2.10.4... <snip> * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===== Message from gcc10-10.3.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc10 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from trousers-0.3.14_3: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account ===== Message from ghostscript9-agpl-base-9.52_19: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from metis-5.1.0_8: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-lme4>=1.1.10 - found ===> Returning to build of R-cran-pbkrtest-0.5.1 ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-broom>0 - not found ===> Installing existing package /packages/All/R-cran-broom-0.7.9.pkg [main-amd64-default-job-13] Installing R-cran-broom-0.7.9... [main-amd64-default-job-13] `-- Installing R-cran-backports-1.2.1... [main-amd64-default-job-13] `-- Extracting R-cran-backports-1.2.1: .......... done [main-amd64-default-job-13] `-- Installing R-cran-dplyr-1.0.7... [main-amd64-default-job-13] | `-- Installing R-cran-BH-1.75.0.0... [main-amd64-default-job-13] | `-- Extracting R-cran-BH-1.75.0.0: .......... done [main-amd64-default-job-13] | `-- Installing R-cran-R6-2.5.0... [main-amd64-default-job-13] | `-- Extracting R-cran-R6-2.5.0: .......... done [main-amd64-default-job-13] | `-- Installing R-cran-assertthat-0.2.1_2... [main-amd64-default-job-13] | `-- Extracting R-cran-assertthat-0.2.1_2: .......... done [main-amd64-default-job-13] | `-- Installing R-cran-generics-0.1.0... [main-amd64-default-job-13] | `-- Extracting R-cran-generics-0.1.0: .......... done [main-amd64-default-job-13] | `-- Installing R-cran-glue-1.4.2... [main-amd64-default-job-13] | `-- Extracting R-cran-glue-1.4.2: .......... done [main-amd64-default-job-13] | `-- Installing R-cran-magrittr-2.0.1... [main-amd64-default-job-13] | `-- Extracting R-cran-magrittr-2.0.1: .......... done [main-amd64-default-job-13] | `-- Installing R-cran-pkgconfig-2.0.3_1... [main-amd64-default-job-13] | `-- Extracting R-cran-pkgconfig-2.0.3_1: .......... done [main-amd64-default-job-13] | `-- Installing R-cran-plogr-0.2.0_3... [main-amd64-default-job-13] | `-- Extracting R-cran-plogr-0.2.0_3: .......... done [main-amd64-default-job-13] | `-- Installing R-cran-rlang-0.4.11... [main-amd64-default-job-13] | `-- Extracting R-cran-rlang-0.4.11: .......... done [main-amd64-default-job-13] | `-- Installing R-cran-tibble-3.1.3... [main-amd64-default-job-13] | | `-- Installing R-cran-ellipsis-0.3.2... [main-amd64-default-job-13] | | `-- Extracting R-cran-ellipsis-0.3.2: .......... done [main-amd64-default-job-13] | | `-- Installing R-cran-fansi-0.5.0... [main-amd64-default-job-13] | | `-- Extracting R-cran-fansi-0.5.0: .......... done [main-amd64-default-job-13] | | `-- Installing R-cran-lifecycle-1.0.0... [main-amd64-default-job-13] | | `-- Extracting R-cran-lifecycle-1.0.0: .......... done [main-amd64-default-job-13] | | `-- Installing R-cran-pillar-1.6.2... [main-amd64-default-job-13] | | `-- Installing R-cran-cli-3.0.1... [main-amd64-default-job-13] | | `-- Extracting R-cran-cli-3.0.1: .......... done [main-amd64-default-job-13] | | `-- Installing R-cran-crayon-1.4.1... [main-amd64-default-job-13] | | `-- Extracting R-cran-crayon-1.4.1: .......... done [main-amd64-default-job-13] | | `-- Installing R-cran-utf8-1.2.2... [main-amd64-default-job-13] | | `-- Extracting R-cran-utf8-1.2.2: .......... done [main-amd64-default-job-13] | | `-- Installing R-cran-vctrs-0.3.8... [main-amd64-default-job-13] | | `-- Extracting R-cran-vctrs-0.3.8: .......... done [main-amd64-default-job-13] | | `-- Extracting R-cran-pillar-1.6.2: .......... done [main-amd64-default-job-13] | `-- Extracting R-cran-tibble-3.1.3: .......... done [main-amd64-default-job-13] | `-- Installing R-cran-tidyselect-1.1.1... [main-amd64-default-job-13] | | `-- Installing R-cran-purrr-0.3.4_1... [main-amd64-default-job-13] | | `-- Extracting R-cran-purrr-0.3.4_1: .......... done [main-amd64-default-job-13] | `-- Extracting R-cran-tidyselect-1.1.1: .......... done [main-amd64-default-job-13] `-- Extracting R-cran-dplyr-1.0.7: .......... done [main-amd64-default-job-13] `-- Installing R-cran-stringr-1.4.0_2... [main-amd64-default-job-13] | `-- Installing R-cran-stringi-1.7.3... [main-amd64-default-job-13] | `-- Extracting R-cran-stringi-1.7.3: .......... done [main-amd64-default-job-13] `-- Extracting R-cran-stringr-1.4.0_2: .......... done [main-amd64-default-job-13] `-- Installing R-cran-tidyr-1.1.3... [main-amd64-default-job-13] | `-- Installing R-cran-cpp11-0.3.1... [main-amd64-default-job-13] | `-- Extracting R-cran-cpp11-0.3.1: .......... done [main-amd64-default-job-13] `-- Extracting R-cran-tidyr-1.1.3: .......... done [main-amd64-default-job-13] Extracting R-cran-broom-0.7.9: .......... done ===== Message from R-cran-crayon-1.4.1: -- ===> NOTICE: The R-cran-crayon port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-broom>0 - found ===> Returning to build of R-cran-pbkrtest-0.5.1 ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-dplyr>0 - found ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-magrittr>0 - found ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-numDeriv>0 - not found ===> Installing existing package /packages/All/R-cran-numDeriv-2016.8.1.1_2.pkg [main-amd64-default-job-13] Installing R-cran-numDeriv-2016.8.1.1_2... [main-amd64-default-job-13] Extracting R-cran-numDeriv-2016.8.1.1_2: .......... done ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-numDeriv>0 - found ===> Returning to build of R-cran-pbkrtest-0.5.1 ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-knitr>0 - not found ===> Installing existing package /packages/All/R-cran-knitr-1.33.pkg [main-amd64-default-job-13] Installing R-cran-knitr-1.33... [main-amd64-default-job-13] `-- Installing R-cran-evaluate-0.14_2... [main-amd64-default-job-13] `-- Extracting R-cran-evaluate-0.14_2: .......... done [main-amd64-default-job-13] `-- Installing R-cran-highr-0.9... [main-amd64-default-job-13] | `-- Installing R-cran-xfun-0.24... [main-amd64-default-job-13] | `-- Extracting R-cran-xfun-0.24: .......... done [main-amd64-default-job-13] `-- Extracting R-cran-highr-0.9: .......... done [main-amd64-default-job-13] `-- Installing R-cran-markdown-1.1_1... [main-amd64-default-job-13] | `-- Installing R-cran-mime-0.11... [main-amd64-default-job-13] | `-- Extracting R-cran-mime-0.11: .......... done [main-amd64-default-job-13] `-- Extracting R-cran-markdown-1.1_1: .......... done [main-amd64-default-job-13] `-- Installing R-cran-yaml-2.2.1_1... [main-amd64-default-job-13] `-- Extracting R-cran-yaml-2.2.1_1: .......... done [main-amd64-default-job-13] Extracting R-cran-knitr-1.33: .......... done ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-knitr>0 - found ===> Returning to build of R-cran-pbkrtest-0.5.1 ===> R-cran-pbkrtest-0.5.1 depends on file: /usr/local/bin/R - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-pbkrtest-0.5.1 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-lme4>=1.1.10 - found ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-broom>0 - found ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-dplyr>0 - found ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-magrittr>0 - found ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-numDeriv>0 - found ===> R-cran-pbkrtest-0.5.1 depends on package: R-cran-knitr>0 - found ===> R-cran-pbkrtest-0.5.1 depends on file: /usr/local/bin/R - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-pbkrtest-0.5.1 ===> Generating temporary packing list * installing *source* package 'pbkrtest' ... ** package 'pbkrtest' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading =>> Killing runaway build after 7200 seconds with no output