Re: main [so: 15] amd64: Rare poudriere bulk builder "stuck in umtxq_sleep" condition (race failure?) during high-load-average "poudriere bulk -c -a" runs
Date: Sat, 04 May 2024 22:09:20 UTC
On May 4, 2024, at 09:59, Mark Millard <marklmi@yahoo.com> wrote:
> I recently did some of my rare "poudriere bulk -c -a" high-load-average
> style experiments, here on a 7950X3D (amd64) system and I ended up with
> a couple of stuck builders (one per bulk run of 2 runs). Contexts:
>
> # uname -apKU
> FreeBSD 7950X3D-UFS 15.0-CURRENT FreeBSD 15.0-CURRENT #142 main-n269589-9dcf39575efb-dirty: Sun Apr 21 07:28:55 UTC 2024 root@7950X3D-ZFS:/usr/obj/BUILDs/main-amd64-nodbg-clang/usr/main-src/amd64.amd64/sys/GENERIC-NODBG amd64 amd64 1500018 1500018
>
> # uname -apKU
> FreeBSD 7950X3D-ZFS 15.0-CURRENT FreeBSD 15.0-CURRENT #142 main-n269589-9dcf39575efb-dirty: Sun Apr 21 07:28:55 UTC 2024 root@7950X3D-ZFS:/usr/obj/BUILDs/main-amd64-nodbg-clang/usr/main-src/amd64.amd64/sys/GENERIC-NODBG amd64 amd64 1500018 1500018
>
> So: One was in a ZFS context and the other was in a UFS context.
>
> 32 hardware threads, 32 builders, ALLOW_MAKE_JOBS=yes in use
> (no use of MAKE_JOBS_NUMBER_LIMIT or the like), USE_TMPFS=all
> in use, TMPFS_BLACKLIST in use, 192 GiBytes of RAM, 512 GiByte
> Swap partition in use, so SystemRAM+SystemSWAP being
> 704 GiBytes.
>
>
> I'll start with notes about the more recent UFS context experiment . . .
>
> graphics/pinta in the UFS experiment had gotten stuck in threads
> of /usr/local/bin/mono (mono-sgen):
>
> [05] 15:31:47 graphics/pinta | pinta-1.7.1_4 stage 15:28:31 2.30 GiB 0% 0%
>
> # procstat -k -k 93415
> PID TID COMM TDNAME KSTACK
> 93415 671706 mono-sgen - mi_switch+0xba sleepq_catch_signals+0x2c6 sleepq_wait_sig+0x9 _sleep+0x1ae umtxq_sleep+0x2cd do_lock_umutex+0x6a6 __umtx_op_wait_umutex+0x49 sys__umtx_op+0x7e amd64_syscall+0x115 fast_syscall_common+0xf8
> 93415 678651 mono-sgen SGen worker mi_switch+0xba sleepq_catch_signals+0x2c6 sleepq_wait_sig+0x9 _sleep+0x1ae umtxq_sleep+0x2cd do_wait+0x244 __umtx_op_wait_uint_private+0x54 sys__umtx_op+0x7e amd64_syscall+0x115 fast_syscall_common+0xf8
> 93415 678652 mono-sgen Finalizer mi_switch+0xba sleepq_catch_signals+0x2c6 sleepq_wait_sig+0x9 _sleep+0x1ae umtxq_sleep+0x2cd __umtx_op_sem2_wait+0x49a sys__umtx_op+0x7e amd64_syscall+0x115 fast_syscall_common+0xf8
> 93415 678655 mono-sgen - mi_switch+0xba sleepq_catch_signals+0x2c6 sleepq_wait_sig+0x9 _sleep+0x1ae umtxq_sleep+0x2cd do_wait+0x244 __umtx_op_wait_uint_private+0x54 sys__umtx_op+0x7e amd64_syscall+0x115 fast_syscall_common+0xf8
> 93415 678660 mono-sgen Thread Pool Wor mi_switch+0xba sleepq_catch_signals+0x2c6 sleepq_wait_sig+0x9 _sleep+0x1ae umtxq_sleep+0x2cd do_lock_umutex+0x6a6 __umtx_op_wait_umutex+0x49 sys__umtx_op+0x7e amd64_syscall+0x115 fast_syscall_common+0xf8
>
> So I did a kill -9 93415 to let the bulk run complete.
>
> I then removed my ADDITION of BROKEN to print/miktex that had gotten
> stuck in the ZFS experiment and tried in the now tiny-load-average
> UFS context: bulk print/miktex graphics/pinta
>
> They both worked just fine, not getting stuck (UFS context):
>
> [00:00:50] [02] [00:00:25] Finished graphics/pinta | pinta-1.7.1_4: Success ending TMPFS: 2.30 GiB
> [00:14:11] [01] [00:13:47] Finished print/miktex | miktex-23.9_3: Success ending TMPFS: 3.21 GiB
>
> I'll note that the "procstat -k -k" for the stuck print/miketex
> in the ZFS context had looked like:
>
> # procstat -k -k 70121
> PID TID COMM TDNAME KSTACK
> 70121 409420 miktex-ctangle - mi_switch+0xba sleepq_catch_signals+0x2c6 sleepq_wait_sig+0x9 _sleep+0x1ae umtxq_sleep+0x2cd do_wait+0x244 __umtx_op_wait+0x53 sys__umtx_op+0x7e amd64_syscall+0x115 fast_syscall_common+0xf8
> 70121 646547 miktex-ctangle - mi_switch+0xba sleepq_catch_signals+0x2c6 sleepq_wait_sig+0x9 _sleep+0x1ae kqueue_scan+0x9f1 kqueue_kevent+0x13b kern_kevent_fp+0x4b kern_kevent_generic+0xd6 sys_kevent+0x61 amd64_syscall+0x115 fast_syscall_common+0xf8
> 70121 646548 miktex-ctangle - mi_switch+0xba sleepq_catch_signals+0x2c6 sleepq_wait_sig+0x9 _sleep+0x1ae umtxq_sleep+0x2cd do_wait+0x244 __umtx_op_wait_uint_private+0x54 sys__umtx_op+0x7e amd64_syscall+0x115 fast_syscall_common+0xf8
>
> Note that, unlike the UFS context, the above also involves: kqueue_scan
>
> It looks like there is some form of failing race(?) condition
> that can occur on amd64 --and does rarely occur in high load
> average contexts.
>
> I've no clue how to reduce this to a simple, repeatable context.
>
Some other oddities, including comparison on ZFS to a run using
MUTUALLY_EXCLUSIVE_BUILD_PACKAGES to a run not using such. USE_TMPFS=all
and ALLOW_MAKE_JOBS were always in use. The combinations were:
A) ZFS without TMPFS_BLACKLIST but with MUTUALLY_EXCLUSIVE_BUILD_PACKAGES
B) ZFS with TMPFS_BLACKLIST but without MUTUALLY_EXCLUSIVE_BUILD_PACKAGES
C) UFS with TMPFS_BLACKLIST but without MUTUALLY_EXCLUSIVE_BUILD_PACKAGES
(No claim that the likes of, say, (A) vs. (B) is a cause of any oddities.)
Just (B) and (C) got ess-emacs_devel build lock failures, (A) did not:
(diff of error log files used)
1081,1082c1104,1105
< Error: file-locked ("~/ESS-24.01.1/lisp/ess-autoloads.el" "root@amd64_ZFS (pid 6112)" "Cannot resolve lock conflict in batch mode")
< ask-user-about-lock("~/ESS-24.01.1/lisp/ess-autoloads.el" "root@amd64_ZFS (pid 6112)")
---
> Error: file-locked ("~/ESS-24.01.1/lisp/ess-autoloads.el" "root@amd64_UFS (pid 81244)" "Cannot resolve lock conflict in batch mode")
> ask-user-about-lock("~/ESS-24.01.1/lisp/ess-autoloads.el" "root@amd64_UFS (pid 81244)")
1090a1114,1118
(B) and (C) got distinct mate-terminal build Segmentation fault failures
[(A) did not get any such]:
(diff of error log files used)
2965,2966c2960
< Warning: Could not merge it translation for msgid:
< DOCUMENT AND MODIFIED VERSIONS OF THE DOCUMENT ARE PROVIDED UNDER THE TERMS OF THE GNU FREE DOCUMENTATION LICENSE WITH THE FURTHER UNDERSTANDING THAT:
---
> if ! test -d "kk/"; then mkdir "kk/"; fi
2972,2973d2965
< if ! test -d "kk/"; then mkdir "kk/"; fi
< Segmentation fault (core dumped)
. . .
> touch "ky/ky.stamp"
> Segmentation fault (core dumped)
Just (A) got openvpn-auth-ldap build failure:
TRConfig.m:43:9: fatal error: 'TRConfigParser.h' file not found
43 | #import "TRConfigParser.h"
| ^~~~~~~~~~~~~~~~~~
1 error generated.
*** [TRConfig.o] Error code 1
make[1]: stopped in /wrkdirs/usr/ports/security/openvpn-auth-ldap/work/openvpn-auth-ldap-auth-ldap-2.0.4/src
Just (A) got rinetd build failure:
--- index.html ---
if which roffit >/dev/null 2>&1; then roffit < > index.html; else touch index.html; fi
sh: Syntax error: redirection unexpected (expecting word)
*** [index.html] Error code 2
make[1]: stopped in /wrkdirs/usr/ports/net/rinetd/work/rinetd-d4e0a60
make[1]: 1 error
Just (A) and (B) got the below adacurses example failure (1st failure shown):
gnatlink rain.ali -L../lib -lAdaCurses -fstack-protector-strong -lncursesw -lncurses -lmenu -lform -lpanel -fstack-protector-strong -lncursesw -lncurses -lmenu -lform -lpanel
gcc -c -I. -I../src -I./../src -O2 -I. ncurses2-acs_display.adb
gcc -c -I. -I../src -I./../src -O2 -I. sample-keyboard_handler.adb
/usr/local/bin/ld: cannot find -lAdaCurses: No such file or directory
collect2: error: ld returned 1 exit status
gnatlink: error when calling /usr/local/gnat12/bin/gcc
gnatmake: *** link failed.
gmake[1]: *** [Makefile:168: rain] Error 4
gmake[1]: *** Waiting for unfinished jobs....
Just (A) got amath example failure (1st failure shown):
mkdir -p shared
c++ -O2 -I. -I../.. -Wall -c clear.cpp
c++ -O3 -I. -I.. -Wall -fPIC -c bigint.cpp -o shared/bigint.o
error: unable to open output file 'shared/aengine.o': 'No such file or directory'
1 error generated.
c++ -O2 -I. -I.. -Wall -c console_stdc.cpp
c++ -O2 -I. -I../.. -Wall -c delete.cpp
c++ -O2 -I. -I.. -Wall -c console_termios.cpp
c++ -O2 -I. -I.. -Wall -c fgrid.cpp
c++ -O3 -I. -I.. -Wall -c bigint.cpp -o static/bigint.o
c++ -O2 -I. -I.. -Wall -c lexer.cpp
c++ -O2 -I. -I.. -Wall -c console_windows.cpp
c++ -O2 -I. -I../.. -Wall -c digits.cpp
c++ -O3 -I. -I.. -Wall -c charbuf.cpp -o static/charbuf.o
gmake[1]: *** [Makefile:29: shared/aengine.o] Error 1
gmake[1]: *** Waiting for unfinished jobs....
ALSO amath: Just (B) got amath example failure (1st failure shown):
error: unable to open output file 'shared/cacos.o': 'No such file or directory'
1 error generated.
gmake[1]: *** [Makefile:31: shared/cacos.o] Error 1
gmake[1]: *** Waiting for unfinished jobs....
gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/amath/work/amath-1.8.5/src/cplex'
gmake: *** [Makefile:76: shared-libs] Error 2
gmake: *** Waiting for unfinished jobs....
Just (B) got an berkeleygw ( BerkeleyGW ) example failure (1st failure shown):
gfortran13 -ffree-form -ffree-line-length-none -I ../Common -I /usr/local/include -c -O3 genwf_mpi.p.f -o genwf_mpi.o -J./
gfortran13 -ffree-form -ffree-line-length-none -I ../Common -I /usr/local/include -c -O3 input_common.p.f -o input_common.o -J./
gfortran13 -ffree-form -ffree-line-length-none -I ../Common -I /usr/local/include -c -O3 genwf_mpi.p.f -o genwf_mpi.o -J./
/usr/local/bin/ld: /usr/lib/crt1.o: in function `_start':
/usr/main-src/lib/csu/amd64/crt1_s.S:69: undefined reference to `main'
collect2: error: ld returned 1 exit status
gmake[2]: *** [../Common/common-rules.mk:321: ../Common/print_version_info.x] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/berkeleygw/work/BerkeleyGW-3.0.1/Common'
gmake[1]: *** [Makefile:82: make-Common] Error 2
gmake[1]: *** Waiting for unfinished jobs....
Just (B) got artemis example failure (1st failure shown):
CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/pic
ard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source
1.8 -target 1.8 uk/ac/sanger/artemis/io/ReadOnlyEntry.java
Note: uk/ac/sanger/artemis/ActionVector.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
uk/ac/sanger/artemis/FilteredEntryGroup.java:43: error: cannot access EntryGroup
public class FilteredEntryGroup implements EntryGroup
^
bad class file: ./uk/ac/sanger/artemis/EntryGroup.class
class file contains wrong class: java.util.NoSuchElementException
Please remove or make sure it appears in the correct subdirectory of the classpath.
gmake: *** [Makefile:47: uk/ac/sanger/artemis/FilteredEntryGroup.class] Error 1
gmake: *** Waiting for unfinished jobs....
Just (B) got ess-emacs_canna example failure (1st failure shown):
Error: error ("Cannot resolve lock conflict in batch mode")
mapbacktrace(#f(compiled-function (evald func args flags) #<bytecode 0x1f681b36ebaed07c>))
debug-early-backtrace()
debug-early(error (error "Cannot resolve lock conflict in batch mode"))
signal(error ("Cannot resolve lock conflict in batch mode"))
error("Cannot resolve lock conflict in batch mode")
ask-user-about-lock("~/ESS-24.01.1/lisp/ess-autoloads.el" "root@amd64_ZFS (pid 38427)")
autoload-find-generated-file("/wrkdirs/usr/ports/math/ess/work-canna/ESS-24.01.1/lisp/ess-autoloads.el")
make-directory-autoloads(("~/ESS-24.01.1/lisp/") "/wrkdirs/usr/ports/math/ess/work-canna/ESS-24.01.1/lisp/ess-autoloads.el")
update-directory-autoloads("~/ESS-24.01.1/lisp/")
(progn (setq make-backup-files nil) (setq generated-autoload-file (expand-file-name "ess-autoloads.el")) (setq find-file-visit-truename t) (update-directory-autoloads default-directory))
eval((progn (setq make-backup-files nil) (setq generated-autoload-file (expand-file-name "ess-autoloads.el")) (setq find-file-visit-truename t) (update-directory-autoloads default-directory)) t)
command-line-1(("--eval" "(progn(setq make-backup-files nil)(setq generated-autoload-file (expand-file-name \"ess-autoloads.el\"))(setq find-file-visit-truename t)(update-directory-autoloads default
-directory))"))
command-line()
normal-top-level()
Output written on refcard.pdf (2 pages, 179059 bytes).
Transcript written on refcard.log.
gmake[1]: *** [Makefile:56: ess-autoloads.el] Error 255
gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/ess/work-canna/ESS-24.01.1/lisp'
gmake: *** [Makefile:49: autoloads] Error 2
gmake: *** Waiting for unfinished jobs....
Just (B) got ngs-sdk example failure (1st failure shown):
error: unable to open output file '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadCollection.pic.o': 'No such file or directory'
1 error generated.
. . .
gmake[3]: *** [/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/./Makefile.config.FreeBSD.amd64:109: /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ob
j/language/c++/ReadCollection.pic.o] Error 1
gmake[3]: *** Waiting for unfinished jobs....
Just (B) got qucsator example failure (1st failure shown):
FAILED: src/interface/CMakeFiles/coreInterface.dir/qucs_interface.cpp.o
/usr/bin/c++ -DDEBUG -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/cad/qucsator/work/qucsator-0.0.20-4-g22126bb9 -I/wrkdirs/usr/ports/cad/qucsator/work/qucsator-0.0.20-4-g22126bb9/src/math -I/wrkdirs/usr/ports
/cad/qucsator/work/qucsator-0.0.20-4-g22126bb9/src -I/wrkdirs/usr/ports/cad/qucsator/work/qucsator-0.0.20-4-g22126bb9/src/components -I/wrkdirs/usr/ports/cad/qucsator/work/qucsator-0.0.20-4-g22126bb9/
src/interface -I/wrkdirs/usr/ports/cad/qucsator/work/.build -I/wrkdirs/usr/ports/cad/qucsator/work/.build/src -I/wrkdirs/usr/ports/cad/qucsator/work/.build/src/components -O2 -pipe -fstack-protector-s
trong -fno-strict-aliasing -fPIC -Wall -std=c++11 -stdlib=libc++ -O4 -DNDEBUG -MD -MT src/interface/CMakeFiles/coreInterface.dir/qucs_interface.cpp.o -MF src/interface/CMakeFiles/coreInterface.dir/qu
cs_interface.cpp.o.d -o src/interface/CMakeFiles/coreInterface.dir/qucs_interface.cpp.o -c /wrkdirs/usr/ports/cad/qucsator/work/qucsator-0.0.20-4-g22126bb9/src/interface/qucs_interface.cpp
c++: warning: -O4 is equivalent to -O3 [-Wdeprecated]
In file included from /wrkdirs/usr/ports/cad/qucsator/work/qucsator-0.0.20-4-g22126bb9/src/interface/qucs_interface.cpp:38:
/wrkdirs/usr/ports/cad/qucsator/work/qucsator-0.0.20-4-g22126bb9/src/components/components.h:164:10: fatal error: 'verilog/tff_SR.core.h' file not found
164 | #include "verilog/tff_SR.core.h"
| ^~~~~~~~~~~~~~~~~~~~~~~
1 error generated.
Just (B) got yuck-cmdline-parser example failure (1st failure shown):
mv -f .deps/yuck_scmver-yuck-scmver.Tpo .deps/yuck_scmver-yuck-scmver.Po
mv: rename .deps/yuck_scmver-yuck-scmver.Tpo to .deps/yuck_scmver-yuck-scmver.Po: No such file or directory
gmake[2]: *** [Makefile:587: yuck_scmver-yuck-scmver.o] Error 1
gmake[2]: *** Waiting for unfinished jobs....
Just (A) got ess-emacs_devel_nox example failure (1st failure shown):
~/ESS-24.01.1/lisp/ess-autoloads.el: root@amd64_ZFS (pid 15639), Cannot resolve lock conflict in batch mode
Error: file-locked ("~/ESS-24.01.1/lisp/ess-autoloads.el" "root@amd64_ZFS (pid 15639)" "Cannot resolve lock conflict in batch mode")
ask-user-about-lock("~/ESS-24.01.1/lisp/ess-autoloads.el" "root@amd64_ZFS (pid 15639)")
autoload-find-generated-file("/wrkdirs/usr/ports/math/ess/work-devel_nox/ESS-24.01.1/lisp/ess-autoloads.el")
make-directory-autoloads(("~/ESS-24.01.1/lisp/") "/wrkdirs/usr/ports/math/ess/work-devel_nox/ESS-24.01.1/lisp/ess-autoloads.el")
update-directory-autoloads("~/ESS-24.01.1/lisp/")
(progn (setq make-backup-files nil) (setq generated-autoload-file (expand-file-name "ess-autoloads.el")) (setq find-file-visit-truename t) (update-directory-autoloads default-directory))
eval((progn (setq make-backup-files nil) (setq generated-autoload-file (expand-file-name "ess-autoloads.el")) (setq find-file-visit-truename t) (update-directory-autoloads default-directory)) t)
command-line-1(("--eval" "(progn(setq make-backup-files nil)(setq generated-autoload-file (expand-file-name \"ess-autoloads.el\"))(setq find-file-visit-truename t)(update-directory-autoloads default
-directory))"))
command-line()
normal-top-level()
gmake[1]: *** [Makefile:56: ess-autoloads.el] Error 255
gmake[1]: *** Waiting for unfinished jobs....
Just (A) got fl_moxgen example failure (1st failure shown):
===> Building for fl_moxgen-1.00_2
--- fl_moxgen_defines.h ---
--- write_pdf.o ---
write_pdf.c:12:10: fatal error: 'fl_moxgen_defines.h' file not found
12 | #include "fl_moxgen_defines.h"
| ^~~~~~~~~~~~~~~~~~~~~
1 error generated.
*** [write_pdf.o] Error code 1
make: stopped in /wrkdirs/usr/ports/comms/fl_moxgen/work/Fl_MoxGen-1.00
make: 1 error
Just (A) got grx example failure (1st failure shown):
cc -L/usr/local/lib -fstack-protector-strong -o ../bin/bin2c utilprog/bin2c.o ../lib/unix/libgrx20X.a -L/usr/local/lib -lX11
cc -L/usr/local/lib -fstack-protector-strong -o ../bin/fnt2c utilprog/fnt2c.o ../lib/unix/libgrx20X.a -L/usr/local/lib -lX11
cc: error: no such file or directory: 'utilprog/bin2c.o'
gmake[1]: *** [makefile.x11:150: ../bin/bin2c] Error 1
gmake[1]: *** Waiting for unfinished jobs....
Just (A) got openvsp example failure (1st failure shown):
In file included from /wrkdirs/usr/ports/cad/openvsp/work/.build/Libraries-prefix/src/Libraries-build/STEPCODE-prefix/src/STEPCODE-build/schemas/sdai_ap203/SdaiCONFIG_CONTROL_DESIGN_unity_entities.cc:
70:
/wrkdirs/usr/ports/cad/openvsp/work/.build/Libraries-prefix/src/Libraries-build/STEPCODE-prefix/src/STEPCODE-build/schemas/sdai_ap203/entity/SdaiB_spline_surface.cc:334:1: error: unknown type name 'f'
334 | f
| ^
===
Mark Millard
marklmi at yahoo.com