git: 90eedca66772 - main - biology/seqwish: update 0.7.11 → 0.7.12
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Date: Sat, 12 Sep 2026 00:38:24 UTC
The branch main has been updated by yuri:
URL: https://cgit.FreeBSD.org/ports/commit/?id=90eedca667726630830532c8ba007b1fde3a71c0
commit 90eedca667726630830532c8ba007b1fde3a71c0
Author: Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2026-09-12 00:21:13 +0000
Commit: Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2026-09-12 00:37:27 +0000
biology/seqwish: update 0.7.11 → 0.7.12
Re-written in Rust.
ChangeLog: https://github.com/pangenome/seqwish/releases/tag/v0.7.12
---
biology/seqwish/Makefile | 28 +-
biology/seqwish/Makefile.crates | 166 ++++++++++
biology/seqwish/distinfo | 338 ++++++++++++++++++++-
biology/seqwish/files/patch-CMakeLists.txt | 56 ----
biology/seqwish/files/patch-Cargo.toml | 8 +
...ic__queue_include_atomic__queue_atomic__queue.h | 36 ---
.../seqwish/files/patch-deps_paryfor_paryfor.hpp | 60 ----
biology/seqwish/files/patch-src_main.cpp | 24 --
biology/seqwish/files/patch-src_tempfile.cpp | 31 --
9 files changed, 517 insertions(+), 230 deletions(-)
diff --git a/biology/seqwish/Makefile b/biology/seqwish/Makefile
index f2391fbff1f3..6b6b027f9103 100644
--- a/biology/seqwish/Makefile
+++ b/biology/seqwish/Makefile
@@ -1,37 +1,25 @@
PORTNAME= seqwish
DISTVERSIONPREFIX= v
-DISTVERSION= 0.7.11
-PORTREVISION= 2
+DISTVERSION= 0.7.12
CATEGORIES= biology
-MASTER_SITES= https://github.com/ekg/seqwish/releases/download/v${DISTVERSION}/
+MASTER_SITES= https://github.com/pangenome/seqwish/releases/download/v${DISTVERSION}/
+DISTFILES= seqwish-v0.7.12.tar.gz
MAINTAINER= yuri@FreeBSD.org
COMMENT= Alignment to variation graph inducer
-WWW= https://github.com/ekg/seqwish
+WWW= https://github.com/pangenome/seqwish
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE
-LIB_DEPENDS= libsdsl.so:devel/sdsl-lite
+LIB_DEPENDS= libzstd.so:archivers/zstd
-USES= cmake:noninja compiler:c++14-lang pkgconfig
+USES= cargo pkgconfig
-CMAKE_ARGS= -DEXTRA_FLAGS="" # disable -march=native
+WRKSRC= ${WRKDIR}/${PORTNAME}-${DISTVERSION}
PLIST_FILES= bin/${PORTNAME}
-OPTIONS_DEFINE= OPENMP
-.if exists(/usr/include/omp.h)
-OPTIONS_DEFAULT= OPENMP
-.else
-OPENMP_BROKEN= OpenMP isn't available on this architecture
-.endif
-
-OPENMP_CMAKE_BOOL= USE_OPENMP
-OPENMP_CXXFLAGS= -fopenmp
-OPENMP_BROKEN_OFF= https://github.com/ekg/seqwish/issues/114
-
-post-extract:
- @${RM} -r ${WRKSRC}/deps/sdsl-lite
+# tests as of 0.7.12: test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
.include <bsd.port.mk>
diff --git a/biology/seqwish/Makefile.crates b/biology/seqwish/Makefile.crates
new file mode 100644
index 000000000000..92e6e0e2c93e
--- /dev/null
+++ b/biology/seqwish/Makefile.crates
@@ -0,0 +1,166 @@
+CARGO_CRATES= adler2-2.0.1 \
+ ahash-0.8.12 \
+ aho-corasick-1.1.4 \
+ allocator-api2-0.2.21 \
+ anes-0.1.6 \
+ anstream-1.0.0 \
+ anstyle-1.0.14 \
+ anstyle-parse-1.0.0 \
+ anstyle-query-1.1.5 \
+ anstyle-wincon-3.0.11 \
+ anyhow-1.0.104 \
+ arbitrary-chunks-0.4.1 \
+ autocfg-1.5.1 \
+ bincode-1.3.3 \
+ bitflags-2.13.1 \
+ bitvec-1.1.1 \
+ block-buffer-0.10.4 \
+ block-pseudorand-0.1.2 \
+ bumpalo-3.20.3 \
+ byteorder-1.5.0 \
+ cast-0.3.0 \
+ cbindgen-0.27.0 \
+ cc-1.3.0 \
+ cfg-if-1.0.4 \
+ chiapos-chacha8-0.1.0 \
+ ciborium-0.2.2 \
+ ciborium-io-0.2.2 \
+ ciborium-ll-0.2.2 \
+ clap-4.6.4 \
+ clap_builder-4.6.2 \
+ clap_derive-4.6.4 \
+ clap_lex-1.1.0 \
+ colorchoice-1.0.5 \
+ cpufeatures-0.2.17 \
+ crc32fast-1.5.0 \
+ criterion-0.5.1 \
+ criterion-plot-0.5.0 \
+ crossbeam-0.8.4 \
+ crossbeam-channel-0.5.16 \
+ crossbeam-deque-0.8.7 \
+ crossbeam-epoch-0.9.20 \
+ crossbeam-queue-0.3.13 \
+ crossbeam-utils-0.8.22 \
+ crunchy-0.2.4 \
+ crypto-common-0.1.7 \
+ dashmap-6.2.1 \
+ digest-0.10.7 \
+ either-1.16.0 \
+ equivalent-1.0.2 \
+ errno-0.3.14 \
+ fastrand-2.5.0 \
+ find-msvc-tools-0.1.9 \
+ flate2-1.1.9 \
+ fm-index-0.3.1 \
+ funty-2.0.0 \
+ futures-core-0.3.33 \
+ futures-task-0.3.33 \
+ futures-util-0.3.33 \
+ generic-array-0.14.7 \
+ getrandom-0.3.4 \
+ getrandom-0.4.3 \
+ half-2.7.1 \
+ hashbrown-0.14.5 \
+ hashbrown-0.17.1 \
+ heck-0.4.1 \
+ heck-0.5.0 \
+ hermit-abi-0.5.2 \
+ iitree-rs-0.1.1 \
+ indexmap-2.14.0 \
+ is-terminal-0.4.17 \
+ is_terminal_polyfill-1.70.2 \
+ itertools-0.10.5 \
+ itoa-1.0.18 \
+ jobserver-0.1.35 \
+ js-sys-0.3.103 \
+ libc-0.2.189 \
+ linux-raw-sys-0.12.1 \
+ lock_api-0.4.14 \
+ log-0.4.33 \
+ memchr-2.8.3 \
+ memmap2-0.9.11 \
+ miniz_oxide-0.8.9 \
+ nanorand-0.6.1 \
+ num-traits-0.2.19 \
+ num_cpus-1.17.0 \
+ once_cell-1.21.4 \
+ once_cell_polyfill-1.70.2 \
+ oorandom-11.1.5 \
+ parking_lot-0.12.5 \
+ parking_lot_core-0.9.12 \
+ partition-0.1.2 \
+ pin-project-lite-0.2.17 \
+ pkg-config-0.3.33 \
+ plotters-0.3.7 \
+ plotters-backend-0.3.7 \
+ plotters-svg-0.3.7 \
+ portable-atomic-1.14.0 \
+ proc-macro2-1.0.107 \
+ quote-1.0.47 \
+ r-efi-5.3.0 \
+ r-efi-6.0.0 \
+ radium-0.7.0 \
+ rayon-1.12.0 \
+ rayon-core-1.13.0 \
+ rdst-0.20.14 \
+ redox_syscall-0.5.18 \
+ regex-1.13.1 \
+ regex-automata-0.4.16 \
+ regex-syntax-0.8.11 \
+ rustc-hash-2.1.3 \
+ rustix-1.1.4 \
+ rustversion-1.0.23 \
+ same-file-1.0.6 \
+ scopeguard-1.2.0 \
+ serde-1.0.229 \
+ serde_core-1.0.229 \
+ serde_derive-1.0.229 \
+ serde_json-1.0.151 \
+ serde_spanned-0.6.9 \
+ sha2-0.10.9 \
+ shlex-2.0.1 \
+ simd-adler32-0.3.10 \
+ slab-0.4.12 \
+ smallvec-1.15.2 \
+ strsim-0.11.1 \
+ sucds-0.8.3 \
+ syn-2.0.119 \
+ syn-3.0.3 \
+ tap-1.0.1 \
+ tempfile-3.27.0 \
+ thiserror-1.0.69 \
+ thiserror-impl-1.0.69 \
+ tikv-jemalloc-sys-0.5.4+5.3.0-patched \
+ tikv-jemallocator-0.5.4 \
+ tinytemplate-1.2.1 \
+ toml-0.8.23 \
+ toml_datetime-0.6.11 \
+ toml_edit-0.22.27 \
+ toml_write-0.1.2 \
+ typenum-1.20.1 \
+ uf_rush-0.1.1 \
+ unicode-ident-1.0.24 \
+ utf8parse-0.2.2 \
+ vers-vecs-1.10.1 \
+ version_check-0.9.5 \
+ voracious_radix_sort-1.2.0 \
+ walkdir-2.5.0 \
+ wasip2-1.0.4+wasi-0.2.12 \
+ wasm-bindgen-0.2.126 \
+ wasm-bindgen-macro-0.2.126 \
+ wasm-bindgen-macro-support-0.2.126 \
+ wasm-bindgen-shared-0.2.126 \
+ web-sys-0.3.103 \
+ winapi-util-0.1.11 \
+ windows-link-0.2.1 \
+ windows-sys-0.61.2 \
+ winnow-0.7.15 \
+ wit-bindgen-0.57.1 \
+ wyz-0.5.1 \
+ zerocopy-0.8.55 \
+ zerocopy-derive-0.8.55 \
+ zmij-1.0.23 \
+ zstd-0.13.3 \
+ zstd-safe-7.2.4 \
+ zstd-sys-2.0.16+zstd.1.5.7 \
+ ragc-common,ragc-core@git+https://github.com/AndreaGuarracino/ragc?rev=c2d7ac2f40b80bab7b17b3c038f755f061dd5593\#c2d7ac2f40b80bab7b17b3c038f755f061dd5593
diff --git a/biology/seqwish/distinfo b/biology/seqwish/distinfo
index 55eb9c359f86..ceaa0451ba4f 100644
--- a/biology/seqwish/distinfo
+++ b/biology/seqwish/distinfo
@@ -1,3 +1,335 @@
-TIMESTAMP = 1731123736
-SHA256 (seqwish-v0.7.11.tar.gz) = 9cbf51990787a93c58a1ee04239608785beb7e8a38efeb02929121b3c8c4a103
-SIZE (seqwish-v0.7.11.tar.gz) = 12125014
+TIMESTAMP = 1789171973
+SHA256 (seqwish-v0.7.12.tar.gz) = 41f5f51fd155cfe739ac9e8bdba8c20d0fea453605fb4b8894db20dd26839fff
+SIZE (seqwish-v0.7.12.tar.gz) = 20592029
+SHA256 (rust/crates/adler2-2.0.1.crate) = 320119579fcad9c21884f5c4861d16174d0e06250625266f50fe6898340abefa
+SIZE (rust/crates/adler2-2.0.1.crate) = 13366
+SHA256 (rust/crates/ahash-0.8.12.crate) = 5a15f179cd60c4584b8a8c596927aadc462e27f2ca70c04e0071964a73ba7a75
+SIZE (rust/crates/ahash-0.8.12.crate) = 43413
+SHA256 (rust/crates/aho-corasick-1.1.4.crate) = ddd31a130427c27518df266943a5308ed92d4b226cc639f5a8f1002816174301
+SIZE (rust/crates/aho-corasick-1.1.4.crate) = 184015
+SHA256 (rust/crates/allocator-api2-0.2.21.crate) = 683d7910e743518b0e34f1186f92494becacb047c7b6bf616c96772180fef923
+SIZE (rust/crates/allocator-api2-0.2.21.crate) = 63622
+SHA256 (rust/crates/anes-0.1.6.crate) = 4b46cbb362ab8752921c97e041f5e366ee6297bd428a31275b9fcf1e380f7299
+SIZE (rust/crates/anes-0.1.6.crate) = 23857
+SHA256 (rust/crates/anstream-1.0.0.crate) = 824a212faf96e9acacdbd09febd34438f8f711fb84e09a8916013cd7815ca28d
+SIZE (rust/crates/anstream-1.0.0.crate) = 28916
+SHA256 (rust/crates/anstyle-1.0.14.crate) = 940b3a0ca603d1eade50a4846a2afffd5ef57a9feac2c0e2ec2e14f9ead76000
+SIZE (rust/crates/anstyle-1.0.14.crate) = 17787
+SHA256 (rust/crates/anstyle-parse-1.0.0.crate) = 52ce7f38b242319f7cabaa6813055467063ecdc9d355bbb4ce0c68908cd8130e
+SIZE (rust/crates/anstyle-parse-1.0.0.crate) = 22042
+SHA256 (rust/crates/anstyle-query-1.1.5.crate) = 40c48f72fd53cd289104fc64099abca73db4166ad86ea0b4341abe65af83dadc
+SIZE (rust/crates/anstyle-query-1.1.5.crate) = 10264
+SHA256 (rust/crates/anstyle-wincon-3.0.11.crate) = 291e6a250ff86cd4a820112fb8898808a366d8f9f58ce16d1f538353ad55747d
+SIZE (rust/crates/anstyle-wincon-3.0.11.crate) = 12638
+SHA256 (rust/crates/anyhow-1.0.104.crate) = 330a5ed07fa54e4702c9d6c4174f74427fc0ef6e214bbd677ae50a5099946470
+SIZE (rust/crates/anyhow-1.0.104.crate) = 48819
+SHA256 (rust/crates/arbitrary-chunks-0.4.1.crate) = 2ad8689a486416c401ea15715a4694de30054248ec627edbf31f49cb64ee4086
+SIZE (rust/crates/arbitrary-chunks-0.4.1.crate) = 8209
+SHA256 (rust/crates/autocfg-1.5.1.crate) = f2032f911046de80f0a198e0901378627c33f59ea0ac00e363d481118bd70a53
+SIZE (rust/crates/autocfg-1.5.1.crate) = 18911
+SHA256 (rust/crates/bincode-1.3.3.crate) = b1f45e9417d87227c7a56d22e471c6206462cba514c7590c09aff4cf6d1ddcad
+SIZE (rust/crates/bincode-1.3.3.crate) = 28958
+SHA256 (rust/crates/bitflags-2.13.1.crate) = b588b76d00fde79687d7646a9b5bdf3cc0f655e0bbd080335a95d7e96f3587da
+SIZE (rust/crates/bitflags-2.13.1.crate) = 51395
+SHA256 (rust/crates/bitvec-1.1.1.crate) = ddcec3d12c579d40898fe0a9a358a803c23e9c52ca3c425707f81c9436211837
+SIZE (rust/crates/bitvec-1.1.1.crate) = 225850
+SHA256 (rust/crates/block-buffer-0.10.4.crate) = 3078c7629b62d3f0439517fa394996acacc5cbc91c5a20d8c658e77abd503a71
+SIZE (rust/crates/block-buffer-0.10.4.crate) = 10538
+SHA256 (rust/crates/block-pseudorand-0.1.2.crate) = 2097358495d244a0643746f4d13eedba4608137008cf9dec54e53a3b700115a6
+SIZE (rust/crates/block-pseudorand-0.1.2.crate) = 6912
+SHA256 (rust/crates/bumpalo-3.20.3.crate) = 72f5acc6cb2ba439de613abc23857ec3d78374d8ed5ac84e9d11336e87da8649
+SIZE (rust/crates/bumpalo-3.20.3.crate) = 98671
+SHA256 (rust/crates/byteorder-1.5.0.crate) = 1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b
+SIZE (rust/crates/byteorder-1.5.0.crate) = 23288
+SHA256 (rust/crates/cast-0.3.0.crate) = 37b2a672a2cb129a2e41c10b1224bb368f9f37a2b16b612598138befd7b37eb5
+SIZE (rust/crates/cast-0.3.0.crate) = 11452
+SHA256 (rust/crates/cbindgen-0.27.0.crate) = 3fce8dd7fcfcbf3a0a87d8f515194b49d6135acab73e18bd380d1d93bb1a15eb
+SIZE (rust/crates/cbindgen-0.27.0.crate) = 215957
+SHA256 (rust/crates/cc-1.3.0.crate) = c89588d05638b5b4594a3348a2d6c20277e43a7f5c5202b05cc56888475a47b8
+SIZE (rust/crates/cc-1.3.0.crate) = 97752
+SHA256 (rust/crates/cfg-if-1.0.4.crate) = 9330f8b2ff13f34540b44e946ef35111825727b38d33286ef986142615121801
+SIZE (rust/crates/cfg-if-1.0.4.crate) = 9360
+SHA256 (rust/crates/chiapos-chacha8-0.1.0.crate) = 33f8be573a85f6c2bc1b8e43834c07e32f95e489b914bf856c0549c3c269cd0a
+SIZE (rust/crates/chiapos-chacha8-0.1.0.crate) = 7246
+SHA256 (rust/crates/ciborium-0.2.2.crate) = 42e69ffd6f0917f5c029256a24d0161db17cea3997d185db0d35926308770f0e
+SIZE (rust/crates/ciborium-0.2.2.crate) = 35611
+SHA256 (rust/crates/ciborium-io-0.2.2.crate) = 05afea1e0a06c9be33d539b876f1ce3692f4afea2cb41f740e7743225ed1c757
+SIZE (rust/crates/ciborium-io-0.2.2.crate) = 6697
+SHA256 (rust/crates/ciborium-ll-0.2.2.crate) = 57663b653d948a338bfb3eeba9bb2fd5fcfaecb9e199e87e1eda4d9e8b240fd9
+SIZE (rust/crates/ciborium-ll-0.2.2.crate) = 14695
+SHA256 (rust/crates/clap-4.6.4.crate) = d91e0c145792ef73a6ad36d27c75ac09f1832222a3c209689d90f534685ee5b7
+SIZE (rust/crates/clap-4.6.4.crate) = 63677
+SHA256 (rust/crates/clap_builder-4.6.2.crate) = f09628afdcc538b57f3c6341e9c8e9970f18e4a481690a64974d7023bd33548b
+SIZE (rust/crates/clap_builder-4.6.2.crate) = 170802
+SHA256 (rust/crates/clap_derive-4.6.4.crate) = d012d2b9d65aca7f18f4d9878a045bc17899bba951561ba5ec3c2ba1eed9a061
+SIZE (rust/crates/clap_derive-4.6.4.crate) = 33533
+SHA256 (rust/crates/clap_lex-1.1.0.crate) = c8d4a3bb8b1e0c1050499d1815f5ab16d04f0959b233085fb31653fbfc9d98f9
+SIZE (rust/crates/clap_lex-1.1.0.crate) = 13470
+SHA256 (rust/crates/colorchoice-1.0.5.crate) = 1d07550c9036bf2ae0c684c4297d503f838287c83c53686d05370d0e139ae570
+SIZE (rust/crates/colorchoice-1.0.5.crate) = 8187
+SHA256 (rust/crates/cpufeatures-0.2.17.crate) = 59ed5838eebb26a2bb2e58f6d5b5316989ae9d08bab10e0e6d103e656d1b0280
+SIZE (rust/crates/cpufeatures-0.2.17.crate) = 13466
+SHA256 (rust/crates/crc32fast-1.5.0.crate) = 9481c1c90cbf2ac953f07c8d4a58aa3945c425b7185c9154d67a65e4230da511
+SIZE (rust/crates/crc32fast-1.5.0.crate) = 40723
+SHA256 (rust/crates/criterion-0.5.1.crate) = f2b12d017a929603d80db1831cd3a24082f8137ce19c69e6447f54f5fc8d692f
+SIZE (rust/crates/criterion-0.5.1.crate) = 110088
+SHA256 (rust/crates/criterion-plot-0.5.0.crate) = 6b50826342786a51a89e2da3a28f1c32b06e387201bc2d19791f622c673706b1
+SIZE (rust/crates/criterion-plot-0.5.0.crate) = 22706
+SHA256 (rust/crates/crossbeam-0.8.4.crate) = 1137cd7e7fc0fb5d3c5a8678be38ec56e819125d8d7907411fe24ccb943faca8
+SIZE (rust/crates/crossbeam-0.8.4.crate) = 10500
+SHA256 (rust/crates/crossbeam-channel-0.5.16.crate) = d85363c37faeca707aef026efa9f3b34d077bce547e48f770770625c6013679e
+SIZE (rust/crates/crossbeam-channel-0.5.16.crate) = 93189
+SHA256 (rust/crates/crossbeam-deque-0.8.7.crate) = 5181e0de7b61eb03a81e347d6dd8797bae9da5146707b51077e2d71a54ec0ceb
+SIZE (rust/crates/crossbeam-deque-0.8.7.crate) = 24141
+SHA256 (rust/crates/crossbeam-epoch-0.9.20.crate) = 2d6914041f254d6e9176c01941b21115dcfb7089e55135a35411081bd106ef3f
+SIZE (rust/crates/crossbeam-epoch-0.9.20.crate) = 47545
+SHA256 (rust/crates/crossbeam-queue-0.3.13.crate) = 803d13fb3b09d88be9f4dbc29062c66b19bf7170867ceb746d2a8689bf6c7a26
+SIZE (rust/crates/crossbeam-queue-0.3.13.crate) = 18407
+SHA256 (rust/crates/crossbeam-utils-0.8.22.crate) = 61803da095bee82a81bb1a452ecc25d3b2f1416d1897eb86430c6159ef717c17
+SIZE (rust/crates/crossbeam-utils-0.8.22.crate) = 46874
+SHA256 (rust/crates/crunchy-0.2.4.crate) = 460fbee9c2c2f33933d720630a6a0bac33ba7053db5344fac858d4b8952d77d5
+SIZE (rust/crates/crunchy-0.2.4.crate) = 3887
+SHA256 (rust/crates/crypto-common-0.1.7.crate) = 78c8292055d1c1df0cce5d180393dc8cce0abec0a7102adb6c7b1eef6016d60a
+SIZE (rust/crates/crypto-common-0.1.7.crate) = 9619
+SHA256 (rust/crates/dashmap-6.2.1.crate) = e6361d5c062261c78a176addb82d4c821ae42bed6089de0e12603cd25de2059c
+SIZE (rust/crates/dashmap-6.2.1.crate) = 26885
+SHA256 (rust/crates/digest-0.10.7.crate) = 9ed9a281f7bc9b7576e61468ba615a66a5c8cfdff42420a70aa82701a3b1e292
+SIZE (rust/crates/digest-0.10.7.crate) = 19557
+SHA256 (rust/crates/either-1.16.0.crate) = 91622ff5e7162018101f2fea40d6ebf4a78bbe5a49736a2020649edf9693679e
+SIZE (rust/crates/either-1.16.0.crate) = 21248
+SHA256 (rust/crates/equivalent-1.0.2.crate) = 877a4ace8713b0bcf2a4e7eec82529c029f1d0619886d18145fea96c3ffe5c0f
+SIZE (rust/crates/equivalent-1.0.2.crate) = 7419
+SHA256 (rust/crates/errno-0.3.14.crate) = 39cab71617ae0d63f51a36d69f866391735b51691dbda63cf6f96d042b63efeb
+SIZE (rust/crates/errno-0.3.14.crate) = 12002
+SHA256 (rust/crates/fastrand-2.5.0.crate) = da7c62ceae207dd37ea5b845da6a0696c799f85e97da1ab5b7910be3c1c80223
+SIZE (rust/crates/fastrand-2.5.0.crate) = 20782
+SHA256 (rust/crates/find-msvc-tools-0.1.9.crate) = 5baebc0774151f905a1a2cc41989300b1e6fbb29aff0ceffa1064fdd3088d582
+SIZE (rust/crates/find-msvc-tools-0.1.9.crate) = 31493
+SHA256 (rust/crates/flate2-1.1.9.crate) = 843fba2746e448b37e26a819579957415c8cef339bf08564fe8b7ddbd959573c
+SIZE (rust/crates/flate2-1.1.9.crate) = 82745
+SHA256 (rust/crates/fm-index-0.3.1.crate) = 919bc722dc3c11b2fa742bbeb99f2519fce4031b99304eb6fa2bee087fc69641
+SIZE (rust/crates/fm-index-0.3.1.crate) = 36795
+SHA256 (rust/crates/funty-2.0.0.crate) = e6d5a32815ae3f33302d95fdcb2ce17862f8c65363dcfd29360480ba1001fc9c
+SIZE (rust/crates/funty-2.0.0.crate) = 13160
+SHA256 (rust/crates/futures-core-0.3.33.crate) = 2cd50c473c80f6d7c3670a752354b8e569b1a7cbfdc0419ec88e5edad85e0dc7
+SIZE (rust/crates/futures-core-0.3.33.crate) = 14691
+SHA256 (rust/crates/futures-task-0.3.33.crate) = b231ed28831efb4a61a08580c4bc233ec56bc009f4cd8f52da2c3cb97df0c109
+SIZE (rust/crates/futures-task-0.3.33.crate) = 11381
+SHA256 (rust/crates/futures-util-0.3.33.crate) = a77a90a256fce34da66415271e30f94ee91c57b04b8a2c042d9cf3220179deaa
+SIZE (rust/crates/futures-util-0.3.33.crate) = 169725
+SHA256 (rust/crates/generic-array-0.14.7.crate) = 85649ca51fd72272d7821adaf274ad91c288277713d9c18820d8499a7ff69e9a
+SIZE (rust/crates/generic-array-0.14.7.crate) = 15950
+SHA256 (rust/crates/getrandom-0.3.4.crate) = 899def5c37c4fd7b2664648c28120ecec138e4d395b459e5ca34f9cce2dd77fd
+SIZE (rust/crates/getrandom-0.3.4.crate) = 50932
+SHA256 (rust/crates/getrandom-0.4.3.crate) = 300e883d756b2e4ec94e02791f39b04b522276138852cfc41d9fb7e904106099
+SIZE (rust/crates/getrandom-0.4.3.crate) = 52437
+SHA256 (rust/crates/half-2.7.1.crate) = 6ea2d84b969582b4b1864a92dc5d27cd2b77b622a8d79306834f1be5ba20d84b
+SIZE (rust/crates/half-2.7.1.crate) = 61040
+SHA256 (rust/crates/hashbrown-0.14.5.crate) = e5274423e17b7c9fc20b6e7e208532f9b19825d82dfd615708b70edd83df41f1
+SIZE (rust/crates/hashbrown-0.14.5.crate) = 141498
+SHA256 (rust/crates/hashbrown-0.17.1.crate) = ed5909b6e89a2db4456e54cd5f673791d7eca6732202bbf2a9cc504fe2f9b84a
+SIZE (rust/crates/hashbrown-0.17.1.crate) = 155512
+SHA256 (rust/crates/heck-0.4.1.crate) = 95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8
+SIZE (rust/crates/heck-0.4.1.crate) = 11567
+SHA256 (rust/crates/heck-0.5.0.crate) = 2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea
+SIZE (rust/crates/heck-0.5.0.crate) = 11517
+SHA256 (rust/crates/hermit-abi-0.5.2.crate) = fc0fef456e4baa96da950455cd02c081ca953b141298e41db3fc7e36b1da849c
+SIZE (rust/crates/hermit-abi-0.5.2.crate) = 17435
+SHA256 (rust/crates/iitree-rs-0.1.1.crate) = 399554cb12c8c69db5275b2fabdd9c195e86690679baa0b2480b07497101e7d5
+SIZE (rust/crates/iitree-rs-0.1.1.crate) = 10667
+SHA256 (rust/crates/indexmap-2.14.0.crate) = d466e9454f08e4a911e14806c24e16fba1b4c121d1ea474396f396069cf949d9
+SIZE (rust/crates/indexmap-2.14.0.crate) = 104085
+SHA256 (rust/crates/is-terminal-0.4.17.crate) = 3640c1c38b8e4e43584d8df18be5fc6b0aa314ce6ebf51b53313d4306cca8e46
+SIZE (rust/crates/is-terminal-0.4.17.crate) = 7458
+SHA256 (rust/crates/is_terminal_polyfill-1.70.2.crate) = a6cb138bb79a146c1bd460005623e142ef0181e3d0219cb493e02f7d08a35695
+SIZE (rust/crates/is_terminal_polyfill-1.70.2.crate) = 7548
+SHA256 (rust/crates/itertools-0.10.5.crate) = b0fd2260e829bddf4cb6ea802289de2f86d6a7a690192fbe91b3f46e0f2c8473
+SIZE (rust/crates/itertools-0.10.5.crate) = 115354
+SHA256 (rust/crates/itoa-1.0.18.crate) = 8f42a60cbdf9a97f5d2305f08a87dc4e09308d1276d28c869c684d7777685682
+SIZE (rust/crates/itoa-1.0.18.crate) = 15935
+SHA256 (rust/crates/jobserver-0.1.35.crate) = 1c00acbd29eabad4a2392fa0e921c874934dbbf4194312ad20f04a0ed67a3cb3
+SIZE (rust/crates/jobserver-0.1.35.crate) = 28890
+SHA256 (rust/crates/js-sys-0.3.103.crate) = 53b44bfcdb3f8d5837a46dae1ca9660a837176eee74a28b229bc626816589102
+SIZE (rust/crates/js-sys-0.3.103.crate) = 108366
+SHA256 (rust/crates/libc-0.2.189.crate) = 3eaf3ede3fee6db1a4c2ee091bf8a8b4dccdc6d17f656fb07896ee72867612f2
+SIZE (rust/crates/libc-0.2.189.crate) = 851502
+SHA256 (rust/crates/linux-raw-sys-0.12.1.crate) = 32a66949e030da00e8c7d4434b251670a91556f4144941d37452769c25d58a53
+SIZE (rust/crates/linux-raw-sys-0.12.1.crate) = 3006116
+SHA256 (rust/crates/lock_api-0.4.14.crate) = 224399e74b87b5f3557511d98dff8b14089b3dadafcab6bb93eab67d3aace965
+SIZE (rust/crates/lock_api-0.4.14.crate) = 29249
+SHA256 (rust/crates/log-0.4.33.crate) = 0ceec5bc11778974d1bcb055b18002eba7f4b3518b6a0081b3af5f21666da9ad
+SIZE (rust/crates/log-0.4.33.crate) = 52997
+SHA256 (rust/crates/memchr-2.8.3.crate) = cf8baf1c55e62ffcace7a9f06f4bd9cd3f0c4beb022d3b367256b91b87513d98
+SIZE (rust/crates/memchr-2.8.3.crate) = 99165
+SHA256 (rust/crates/memmap2-0.9.11.crate) = d1219ed1b7f229ee7104d281dd01d6802fe28bb6e95d292942c4daacdeb798c0
+SIZE (rust/crates/memmap2-0.9.11.crate) = 35116
+SHA256 (rust/crates/miniz_oxide-0.8.9.crate) = 1fa76a2c86f704bdb222d66965fb3d63269ce38518b83cb0575fca855ebb6316
+SIZE (rust/crates/miniz_oxide-0.8.9.crate) = 67132
+SHA256 (rust/crates/nanorand-0.6.1.crate) = 729eb334247daa1803e0a094d0a5c55711b85571179f5ec6e53eccfdf7008958
+SIZE (rust/crates/nanorand-0.6.1.crate) = 11009
+SHA256 (rust/crates/num-traits-0.2.19.crate) = 071dfc062690e90b734c0b2273ce72ad0ffa95f0c74596bc250dcfd960262841
+SIZE (rust/crates/num-traits-0.2.19.crate) = 51631
+SHA256 (rust/crates/num_cpus-1.17.0.crate) = 91df4bbde75afed763b708b7eee1e8e7651e02d97f6d5dd763e89367e957b23b
+SIZE (rust/crates/num_cpus-1.17.0.crate) = 15874
+SHA256 (rust/crates/once_cell-1.21.4.crate) = 9f7c3e4beb33f85d45ae3e3a1792185706c8e16d043238c593331cc7cd313b50
+SIZE (rust/crates/once_cell-1.21.4.crate) = 35010
+SHA256 (rust/crates/once_cell_polyfill-1.70.2.crate) = 384b8ab6d37215f3c5301a95a4accb5d64aa607f1fcb26a11b5303878451b4fe
+SIZE (rust/crates/once_cell_polyfill-1.70.2.crate) = 7448
+SHA256 (rust/crates/oorandom-11.1.5.crate) = d6790f58c7ff633d8771f42965289203411a5e5c68388703c06e14f24770b41e
+SIZE (rust/crates/oorandom-11.1.5.crate) = 23750
+SHA256 (rust/crates/parking_lot-0.12.5.crate) = 93857453250e3077bd71ff98b6a65ea6621a19bb0f559a85248955ac12c45a1a
+SIZE (rust/crates/parking_lot-0.12.5.crate) = 46735
+SHA256 (rust/crates/parking_lot_core-0.9.12.crate) = 2621685985a2ebf1c516881c026032ac7deafcda1a2c9b7850dc81e3dfcb64c1
+SIZE (rust/crates/parking_lot_core-0.9.12.crate) = 34110
+SHA256 (rust/crates/partition-0.1.2.crate) = 947f833aaa585cf12b8ec7c0476c98784c49f33b861376ffc84ed92adebf2aba
+SIZE (rust/crates/partition-0.1.2.crate) = 8400
+SHA256 (rust/crates/pin-project-lite-0.2.17.crate) = a89322df9ebe1c1578d689c92318e070967d1042b512afbe49518723f4e6d5cd
+SIZE (rust/crates/pin-project-lite-0.2.17.crate) = 31034
+SHA256 (rust/crates/pkg-config-0.3.33.crate) = 19f132c84eca552bf34cab8ec81f1c1dcc229b811638f9d283dceabe58c5569e
+SIZE (rust/crates/pkg-config-0.3.33.crate) = 21590
+SHA256 (rust/crates/plotters-0.3.7.crate) = 5aeb6f403d7a4911efb1e33402027fc44f29b5bf6def3effcc22d7bb75f2b747
+SIZE (rust/crates/plotters-0.3.7.crate) = 149031
+SHA256 (rust/crates/plotters-backend-0.3.7.crate) = df42e13c12958a16b3f7f4386b9ab1f3e7933914ecea48da7139435263a4172a
+SIZE (rust/crates/plotters-backend-0.3.7.crate) = 13709
+SHA256 (rust/crates/plotters-svg-0.3.7.crate) = 51bae2ac328883f7acdfea3d66a7c35751187f870bc81f94563733a154d7a670
+SIZE (rust/crates/plotters-svg-0.3.7.crate) = 6715
+SHA256 (rust/crates/portable-atomic-1.14.0.crate) = 3d20d5497ef88037a52ff98267d066e7f11fcc5e99bbfbd58a42336193aacec3
+SIZE (rust/crates/portable-atomic-1.14.0.crate) = 200703
+SHA256 (rust/crates/proc-macro2-1.0.107.crate) = 985e7ec9bb745e6ce6535b544d84d6cd6f7ad8bd711c398938ae983b91a766d9
+SIZE (rust/crates/proc-macro2-1.0.107.crate) = 59588
+SHA256 (rust/crates/quote-1.0.47.crate) = 1fbf4db142a473a8d80c26bbf18454ed458bf8d26c8219c331daecfdbd079001
+SIZE (rust/crates/quote-1.0.47.crate) = 31622
+SHA256 (rust/crates/r-efi-5.3.0.crate) = 69cdb34c158ceb288df11e18b4bd39de994f6657d83847bdffdbd7f346754b0f
+SIZE (rust/crates/r-efi-5.3.0.crate) = 64532
+SHA256 (rust/crates/r-efi-6.0.0.crate) = f8dcc9c7d52a811697d2151c701e0d08956f92b0e24136cf4cf27b57a6a0d9bf
+SIZE (rust/crates/r-efi-6.0.0.crate) = 65303
+SHA256 (rust/crates/radium-0.7.0.crate) = dc33ff2d4973d518d823d61aa239014831e521c75da58e3df4840d3f47749d09
+SIZE (rust/crates/radium-0.7.0.crate) = 10906
+SHA256 (rust/crates/rayon-1.12.0.crate) = fb39b166781f92d482534ef4b4b1b2568f42613b53e5b6c160e24cfbfa30926d
+SIZE (rust/crates/rayon-1.12.0.crate) = 183391
+SHA256 (rust/crates/rayon-core-1.13.0.crate) = 22e18b0f0062d30d4230b2e85ff77fdfe4326feb054b9783a3460d8435c8ab91
+SIZE (rust/crates/rayon-core-1.13.0.crate) = 73151
+SHA256 (rust/crates/rdst-0.20.14.crate) = 6e7970b4e577b76a96d5e56b5f6662b66d1a4e1f5bb026ee118fc31b373c2752
+SIZE (rust/crates/rdst-0.20.14.crate) = 38782
+SHA256 (rust/crates/redox_syscall-0.5.18.crate) = ed2bf2547551a7053d6fdfafda3f938979645c44812fbfcda098faae3f1a362d
+SIZE (rust/crates/redox_syscall-0.5.18.crate) = 30747
+SHA256 (rust/crates/regex-1.13.1.crate) = f020237b6c8eed93db2e2cb53c00c60a8e1bc73da7d073199a1180401450218d
+SIZE (rust/crates/regex-1.13.1.crate) = 157118
+SHA256 (rust/crates/regex-automata-0.4.16.crate) = 8fcfdb36bda0c880c5931cdc7a2bcdc8ba4556847b9d912bca70bc94708711ad
+SIZE (rust/crates/regex-automata-0.4.16.crate) = 627556
+SHA256 (rust/crates/regex-syntax-0.8.11.crate) = d6f6ff9a378485b298a5286656da665ba74413d36db0979633275d2e708145d4
+SIZE (rust/crates/regex-syntax-0.8.11.crate) = 359055
+SHA256 (rust/crates/rustc-hash-2.1.3.crate) = 6b1e7f9a428571be2dc5bc0505c13fb6bf936822b894ec87abf8a08a4e51742d
+SIZE (rust/crates/rustc-hash-2.1.3.crate) = 14811
+SHA256 (rust/crates/rustix-1.1.4.crate) = b6fe4565b9518b83ef4f91bb47ce29620ca828bd32cb7e408f0062e9930ba190
+SIZE (rust/crates/rustix-1.1.4.crate) = 425241
+SHA256 (rust/crates/rustversion-1.0.23.crate) = cf54715a573b99ac80df0bc206da022bcd442c974952c7b9720069370852e21f
+SIZE (rust/crates/rustversion-1.0.23.crate) = 21013
+SHA256 (rust/crates/same-file-1.0.6.crate) = 93fc1dc3aaa9bfed95e02e6eadabb4baf7e3078b0bd1b4d7b6b0b68378900502
+SIZE (rust/crates/same-file-1.0.6.crate) = 10183
+SHA256 (rust/crates/scopeguard-1.2.0.crate) = 94143f37725109f92c262ed2cf5e59bce7498c01bcc1502d7b9afe439a4e9f49
+SIZE (rust/crates/scopeguard-1.2.0.crate) = 11619
+SHA256 (rust/crates/serde-1.0.229.crate) = 4148590afebada386688f18773da617792bf2ef03ffc1e4cbd2b1d45b023e0ba
+SIZE (rust/crates/serde-1.0.229.crate) = 83669
+SHA256 (rust/crates/serde_core-1.0.229.crate) = 67dca2c9c51e58a4791a4b1ed58308b39c64224d349a935ab5039aa360942a48
+SIZE (rust/crates/serde_core-1.0.229.crate) = 63100
+SHA256 (rust/crates/serde_derive-1.0.229.crate) = e7a5d71263a5a7d47b41f6b3f06ba276f10cc18b0931f1799f710578e2309348
+SIZE (rust/crates/serde_derive-1.0.229.crate) = 59864
+SHA256 (rust/crates/serde_json-1.0.151.crate) = c841b55ecdae098c80dcae9cf767f6f8a0c2cdb3416bbef72181df4d0fe73f14
+SIZE (rust/crates/serde_json-1.0.151.crate) = 156556
+SHA256 (rust/crates/serde_spanned-0.6.9.crate) = bf41e0cfaf7226dca15e8197172c295a782857fcb97fad1808a166870dee75a3
+SIZE (rust/crates/serde_spanned-0.6.9.crate) = 10210
+SHA256 (rust/crates/sha2-0.10.9.crate) = a7507d819769d01a365ab707794a4084392c824f54a7a6a7862f8c3d0892b283
+SIZE (rust/crates/sha2-0.10.9.crate) = 29271
+SHA256 (rust/crates/shlex-2.0.1.crate) = f8fadd59c855ef2080decdef8ff161eb6661b86933c9d82e5ba29dc602a55aba
+SIZE (rust/crates/shlex-2.0.1.crate) = 19332
+SHA256 (rust/crates/simd-adler32-0.3.10.crate) = 3a219298ac11a56ea9a6d2120044824d6f01aeb034955e7af7bc16858527deea
+SIZE (rust/crates/simd-adler32-0.3.10.crate) = 18760
+SHA256 (rust/crates/slab-0.4.12.crate) = 0c790de23124f9ab44544d7ac05d60440adc586479ce501c1d6d7da3cd8c9cf5
+SIZE (rust/crates/slab-0.4.12.crate) = 19080
+SHA256 (rust/crates/smallvec-1.15.2.crate) = 8ed6a63f02c8539c91a8685a86f4099661ba3da017932f6ebbea6de3f0fa7c90
+SIZE (rust/crates/smallvec-1.15.2.crate) = 34899
+SHA256 (rust/crates/strsim-0.11.1.crate) = 7da8b5736845d9f2fcb837ea5d9e2628564b3b043a70948a3f0b778838c5fb4f
+SIZE (rust/crates/strsim-0.11.1.crate) = 14266
+SHA256 (rust/crates/sucds-0.8.3.crate) = cd324eaa05be64f105ea5269bb8aabd70e5dd57fa5c673b167f451b07d6c0dcd
+SIZE (rust/crates/sucds-0.8.3.crate) = 44525
+SHA256 (rust/crates/syn-2.0.119.crate) = 872831b642d1a07999a962a351ed35b955ea2cfc8f3862091e2a240a84f17297
+SIZE (rust/crates/syn-2.0.119.crate) = 307407
+SHA256 (rust/crates/syn-3.0.3.crate) = 53e9bae58849f64dfa4f5d5ae372c8341f7305f82a3868709269343628b659a3
+SIZE (rust/crates/syn-3.0.3.crate) = 312999
+SHA256 (rust/crates/tap-1.0.1.crate) = 55937e1799185b12863d447f42597ed69d9928686b8d88a1df17376a097d8369
+SIZE (rust/crates/tap-1.0.1.crate) = 11316
+SHA256 (rust/crates/tempfile-3.27.0.crate) = 32497e9a4c7b38532efcdebeef879707aa9f794296a4f0244f6f69e9bc8574bd
+SIZE (rust/crates/tempfile-3.27.0.crate) = 44780
+SHA256 (rust/crates/thiserror-1.0.69.crate) = b6aaf5339b578ea85b50e080feb250a3e8ae8cfcdff9a461c9ec2904bc923f52
+SIZE (rust/crates/thiserror-1.0.69.crate) = 22198
+SHA256 (rust/crates/thiserror-impl-1.0.69.crate) = 4fee6c4efc90059e10f81e6d42c60a18f76588c3d74cb83a0b242a2b6c7504c1
+SIZE (rust/crates/thiserror-impl-1.0.69.crate) = 18365
+SHA256 (rust/crates/tikv-jemalloc-sys-0.5.4+5.3.0-patched.crate) = 9402443cb8fd499b6f327e40565234ff34dbda27460c5b47db0db77443dd85d1
+SIZE (rust/crates/tikv-jemalloc-sys-0.5.4+5.3.0-patched.crate) = 884765
+SHA256 (rust/crates/tikv-jemallocator-0.5.4.crate) = 965fe0c26be5c56c94e38ba547249074803efd52adfb66de62107d95aab3eaca
+SIZE (rust/crates/tikv-jemallocator-0.5.4.crate) = 13101
+SHA256 (rust/crates/tinytemplate-1.2.1.crate) = be4d6b5f19ff7664e8c98d03e2139cb510db9b0a60b55f8e8709b689d939b6bc
+SIZE (rust/crates/tinytemplate-1.2.1.crate) = 26490
+SHA256 (rust/crates/toml-0.8.23.crate) = dc1beb996b9d83529a9e75c17a1686767d148d70663143c7854d8b4a09ced362
+SIZE (rust/crates/toml-0.8.23.crate) = 36050
+SHA256 (rust/crates/toml_datetime-0.6.11.crate) = 22cddaf88f4fbc13c51aebbf5f8eceb5c7c5a9da2ac40a13519eb5b0a0e8f11c
+SIZE (rust/crates/toml_datetime-0.6.11.crate) = 16125
+SHA256 (rust/crates/toml_edit-0.22.27.crate) = 41fe8c660ae4257887cf66394862d21dbca4a6ddd26f04a3560410406a2f819a
+SIZE (rust/crates/toml_edit-0.22.27.crate) = 78602
+SHA256 (rust/crates/toml_write-0.1.2.crate) = 5d99f8c9a7727884afe522e9bd5edbfc91a3312b36a77b5fb8926e4c31a41801
+SIZE (rust/crates/toml_write-0.1.2.crate) = 15660
+SHA256 (rust/crates/typenum-1.20.1.crate) = b6f5e870be6c3b371b77fe0ee0bafb859fa4964b4404c27de1d380043c4dda20
+SIZE (rust/crates/typenum-1.20.1.crate) = 105479
+SHA256 (rust/crates/uf_rush-0.1.1.crate) = 8337df5fb62e7ee6aede626db43966bbd54ea8c797f830427fa55b3837455da3
+SIZE (rust/crates/uf_rush-0.1.1.crate) = 6752
+SHA256 (rust/crates/unicode-ident-1.0.24.crate) = e6e4313cd5fcd3dad5cafa179702e2b244f760991f45397d14d4ebf38247da75
+SIZE (rust/crates/unicode-ident-1.0.24.crate) = 49298
+SHA256 (rust/crates/utf8parse-0.2.2.crate) = 06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821
+SIZE (rust/crates/utf8parse-0.2.2.crate) = 13499
+SHA256 (rust/crates/vers-vecs-1.10.1.crate) = cc0435d0e97f854c537ab74e86072e1389c73251eba2cf46069edadd72d0e860
+SIZE (rust/crates/vers-vecs-1.10.1.crate) = 109203
+SHA256 (rust/crates/version_check-0.9.5.crate) = 0b928f33d975fc6ad9f86c8f283853ad26bdd5b10b7f1542aa2fa15e2289105a
+SIZE (rust/crates/version_check-0.9.5.crate) = 15554
+SHA256 (rust/crates/voracious_radix_sort-1.2.0.crate) = 446e7ffcb6c27a71d05af7e51ef2ee5b71c48424b122a832f2439651e1914899
+SIZE (rust/crates/voracious_radix_sort-1.2.0.crate) = 291826
+SHA256 (rust/crates/walkdir-2.5.0.crate) = 29790946404f91d9c5d06f9874efddea1dc06c5efe94541a7d6863108e3a5e4b
+SIZE (rust/crates/walkdir-2.5.0.crate) = 23951
+SHA256 (rust/crates/wasip2-1.0.4+wasi-0.2.12.crate) = b67efb37e106e55ce722a510d6b5f9c17f083e5fc79afc2badeb12cc313d9487
+SIZE (rust/crates/wasip2-1.0.4+wasi-0.2.12.crate) = 135311
+SHA256 (rust/crates/wasm-bindgen-0.2.126.crate) = 4b067c0c11094aef6b7a801c1e34a26affafdf3d051dba08456b868789aaf9a4
+SIZE (rust/crates/wasm-bindgen-0.2.126.crate) = 67461
+SHA256 (rust/crates/wasm-bindgen-macro-0.2.126.crate) = 167ce5e579f6bcf889c4f7175a8a5a585de84e8ff93976ce393efa5f2837aab1
+SIZE (rust/crates/wasm-bindgen-macro-0.2.126.crate) = 9303
+SHA256 (rust/crates/wasm-bindgen-macro-support-0.2.126.crate) = f3997c7839262f4ef12cf90b818d6340c18e80f263f1a94bf157d0ec4420380e
+SIZE (rust/crates/wasm-bindgen-macro-support-0.2.126.crate) = 82688
+SHA256 (rust/crates/wasm-bindgen-shared-0.2.126.crate) = dc1b4cb0cc549fcf58d7dfc081778139b3d283a081644e833e84682ad71cea24
+SIZE (rust/crates/wasm-bindgen-shared-0.2.126.crate) = 11287
+SHA256 (rust/crates/web-sys-0.3.103.crate) = 8622dcb61c0bcc9fffa6938bed81210af2da9a7e4a1a834b2e37a59b6dfb6141
+SIZE (rust/crates/web-sys-0.3.103.crate) = 675560
+SHA256 (rust/crates/winapi-util-0.1.11.crate) = c2a7b1c03c876122aa43f3020e6c3c3ee5c05081c9a00739faf7503aeba10d22
+SIZE (rust/crates/winapi-util-0.1.11.crate) = 13368
+SHA256 (rust/crates/windows-link-0.2.1.crate) = f0805222e57f7521d6a62e36fa9163bc891acd422f971defe97d64e70d0a4fe5
+SIZE (rust/crates/windows-link-0.2.1.crate) = 6133
+SHA256 (rust/crates/windows-sys-0.61.2.crate) = ae137229bcbd6cdf0f7b80a31df61766145077ddf49416a728b02cb3921ff3fc
+SIZE (rust/crates/windows-sys-0.61.2.crate) = 2517186
+SHA256 (rust/crates/winnow-0.7.15.crate) = df79d97927682d2fd8adb29682d1140b343be4ac0f08fd68b7765d9c059d3945
+SIZE (rust/crates/winnow-0.7.15.crate) = 187092
+SHA256 (rust/crates/wit-bindgen-0.57.1.crate) = 1ebf944e87a7c253233ad6766e082e3cd714b5d03812acc24c318f549614536e
+SIZE (rust/crates/wit-bindgen-0.57.1.crate) = 71227
+SHA256 (rust/crates/wyz-0.5.1.crate) = 05f360fc0b24296329c78fda852a1e9ae82de9cf7b27dae4b7f62f118f77b9ed
+SIZE (rust/crates/wyz-0.5.1.crate) = 18790
+SHA256 (rust/crates/zerocopy-0.8.55.crate) = b5a105cd7b140f6eeec8acff2ea38135d3cab283ada58540f629fe51e46696eb
+SIZE (rust/crates/zerocopy-0.8.55.crate) = 284957
+SHA256 (rust/crates/zerocopy-derive-0.8.55.crate) = 0fe976fb70c78cd64cccfe3a6fc142244e8a77b70959b30faf9d0ac37ee228eb
+SIZE (rust/crates/zerocopy-derive-0.8.55.crate) = 103316
+SHA256 (rust/crates/zmij-1.0.23.crate) = 29666d0abbfad1e3dc4dcf6144730dd3a3ab225bbbdac83319345b1b44ccfc1b
+SIZE (rust/crates/zmij-1.0.23.crate) = 28612
+SHA256 (rust/crates/zstd-0.13.3.crate) = e91ee311a569c327171651566e07972200e76fcfe2242a4fa446149a3881c08a
+SIZE (rust/crates/zstd-0.13.3.crate) = 30514
+SHA256 (rust/crates/zstd-safe-7.2.4.crate) = 8f49c4d5f0abb602a93fb8736af2a4f4dd9512e36f7f570d66e65ff867ed3b9d
+SIZE (rust/crates/zstd-safe-7.2.4.crate) = 29350
+SHA256 (rust/crates/zstd-sys-2.0.16+zstd.1.5.7.crate) = 91e19ebc2adc8f83e43039e79776e3fda8ca919132d68a1fed6a5faca2683748
+SIZE (rust/crates/zstd-sys-2.0.16+zstd.1.5.7.crate) = 775620
+SHA256 (AndreaGuarracino-ragc-c2d7ac2f40b80bab7b17b3c038f755f061dd5593_GH0.tar.gz) = 16f18572d546052b850d422e1c08cc162106e64e44ffee5f148aac9e39e1caae
+SIZE (AndreaGuarracino-ragc-c2d7ac2f40b80bab7b17b3c038f755f061dd5593_GH0.tar.gz) = 310972
diff --git a/biology/seqwish/files/patch-CMakeLists.txt b/biology/seqwish/files/patch-CMakeLists.txt
deleted file mode 100644
index 1c3e0fd7147d..000000000000
--- a/biology/seqwish/files/patch-CMakeLists.txt
+++ /dev/null
@@ -1,56 +0,0 @@
-# unbundle sdsl-lite
-
---- CMakeLists.txt.orig 2023-04-19 15:25:32 UTC
-+++ CMakeLists.txt
-@@ -79,18 +79,15 @@ include_directories("${PROJECT_SOURCE_DIR}")
- # Add external projects
- include(${CMAKE_ROOT}/Modules/ExternalProject.cmake)
-
--# sdsl-lite (full build using its cmake config)
--ExternalProject_Add(sdsl-lite
-- SOURCE_DIR "${CMAKE_SOURCE_DIR}/deps/sdsl-lite"
-- CMAKE_ARGS "${CMAKE_ARGS};-DCMAKE_INSTALL_PREFIX=<INSTALL_DIR>"
-- UPDATE_COMMAND ""
-- INSTALL_COMMAND "")
--ExternalProject_Get_property(sdsl-lite INSTALL_DIR)
--set(sdsl-lite_INCLUDE "${INSTALL_DIR}/src/sdsl-lite-build/include")
--set(sdsl-lite-divsufsort_INCLUDE "${INSTALL_DIR}/src/sdsl-lite-build/external/libdivsufsort/include")
--set(sdsl-lite_LIB "${INSTALL_DIR}/src/sdsl-lite-build/lib")
--set(sdsl-lite-divsufsort_LIB "${INSTALL_DIR}/src/sdsl-lite-build/external/libdivsufsort/lib")
-+# sdsl-lite - use system library
-+find_package(PkgConfig REQUIRED)
-+pkg_check_modules(SDSL REQUIRED sdsl-lite)
-+pkg_check_modules(DIVSUFSORT REQUIRED libdivsufsort)
-+pkg_check_modules(DIVSUFSORT64 REQUIRED libdivsufsort64)
-+set(sdsl-lite_INCLUDE "${SDSL_INCLUDE_DIRS}")
-+set(sdsl-lite-divsufsort_INCLUDE "${DIVSUFSORT_INCLUDE_DIRS}")
-+link_directories(${SDSL_LIBRARY_DIRS} ${DIVSUFSORT_LIBRARY_DIRS} ${DIVSUFSORT64_LIBRARY_DIRS})
-
- # taywee's C++ args library, header only
- ExternalProject_Add(tayweeargs
- SOURCE_DIR "${CMAKE_SOURCE_DIR}/deps/args"
-@@ -227,7 +224,6 @@ add_executable(seqwish
- ${CMAKE_SOURCE_DIR}/src/version.cpp
- )
- add_dependencies(seqwish tayweeargs)
--add_dependencies(seqwish sdsl-lite)
- add_dependencies(seqwish gzipreader)
- add_dependencies(seqwish mmmulti)
- add_dependencies(seqwish iitii)
-@@ -253,11 +249,11 @@ target_include_directories(seqwish PUBLIC
- "${paryfor_INCLUDE}"
- "${mio_INCLUDE}")
- target_link_libraries(seqwish
-- "${sdsl-lite_LIB}/libsdsl.a"
-- "${sdsl-lite-divsufsort_LIB}/libdivsufsort.a"
-- "${sdsl-lite-divsufsort_LIB}/libdivsufsort64.a"
-- "-latomic"
-+ ${SDSL_LIBRARIES}
-+ ${DIVSUFSORT_LIBRARIES}
-+ ${DIVSUFSORT64_LIBRARIES}
-+ #"-latomic"
- Threads::Threads
-- jemalloc
-+ #jemalloc
- z)
- if (BUILD_STATIC)
diff --git a/biology/seqwish/files/patch-Cargo.toml b/biology/seqwish/files/patch-Cargo.toml
new file mode 100644
index 000000000000..9719128b2151
--- /dev/null
+++ b/biology/seqwish/files/patch-Cargo.toml
@@ -0,0 +1,8 @@
+--- Cargo.toml.orig 2024-07-24 10:53:00 UTC
++++ Cargo.toml
+@@ -64,4 +64,4 @@ clap = { version = "4.5", features = ["derive"] } #
+ clap = { version = "4.5", features = ["derive"] } # Command-line argument parsing
+
+ # AGC (Assembled Genomes Compressor) input support: pure-Rust decompressor, same crate/rev impg and cigzip use
+-ragc-core = { git = "https://github.com/AndreaGuarracino/ragc", rev = "c2d7ac2f40b80bab7b17b3c038f755f061dd5593" }
++ragc-core = { git = "https://github.com/AndreaGuarracino/ragc" }
diff --git a/biology/seqwish/files/patch-deps_atomic__queue_include_atomic__queue_atomic__queue.h b/biology/seqwish/files/patch-deps_atomic__queue_include_atomic__queue_atomic__queue.h
deleted file mode 100644
index caeb5f19c418..000000000000
--- a/biology/seqwish/files/patch-deps_atomic__queue_include_atomic__queue_atomic__queue.h
+++ /dev/null
@@ -1,36 +0,0 @@
-- fix compilation error with clang-19
-
---- deps/atomic_queue/include/atomic_queue/atomic_queue.h.orig 2025-10-10 06:48:58.627210000 -0700
-+++ deps/atomic_queue/include/atomic_queue/atomic_queue.h 2025-10-10 06:49:07.323108000 -0700
-@@ -393,13 +393,13 @@
-
- T do_pop(unsigned tail) noexcept {
- unsigned index = details::remap_index<SHUFFLE_BITS>(tail % size_);
-- return Base::template do_pop_any(states_[index], elements_[index]);
-+ return Base::template do_pop_any<>(states_[index], elements_[index]);
- }
-
- template<class U>
- void do_push(U&& element, unsigned head) noexcept {
- unsigned index = details::remap_index<SHUFFLE_BITS>(head % size_);
-- Base::template do_push_any(std::forward<U>(element), states_[index], elements_[index]);
-+ Base::template do_push_any<>(std::forward<U>(element), states_[index], elements_[index]);
- }
-
- public:
-@@ -521,13 +521,13 @@
-
- T do_pop(unsigned tail) noexcept {
- unsigned index = details::remap_index<SHUFFLE_BITS>(tail & (size_ - 1));
-- return Base::template do_pop_any(states_[index], elements_[index]);
-+ return Base::template do_pop_any<>(states_[index], elements_[index]);
- }
-
- template<class U>
- void do_push(U&& element, unsigned head) noexcept {
- unsigned index = details::remap_index<SHUFFLE_BITS>(head & (size_ - 1));
-- Base::template do_push_any(std::forward<U>(element), states_[index], elements_[index]);
-+ Base::template do_push_any<>(std::forward<U>(element), states_[index], elements_[index]);
- }
-
- public:
diff --git a/biology/seqwish/files/patch-deps_paryfor_paryfor.hpp b/biology/seqwish/files/patch-deps_paryfor_paryfor.hpp
deleted file mode 100644
index 4f4e2b9eb9a9..000000000000
--- a/biology/seqwish/files/patch-deps_paryfor_paryfor.hpp
+++ /dev/null
@@ -1,60 +0,0 @@
-- fix for PPC
-- fix build with clang19
-
---- deps/paryfor/paryfor.hpp.orig 2024-10-15 18:25:21 UTC
-+++ deps/paryfor/paryfor.hpp
-@@ -51,7 +51,22 @@ static inline void spin_loop_pause() noexcept {
- }
- } // namespace atomic_queue
- } // namespace paryfor
-+#elif defined(__ppc64__) || defined(__powerpc64__)
-+namespace paryfor {
-+namespace atomic_queue {
-+constexpr int CACHE_LINE_SIZE = 128; // TODO: Review that this is the correct value.
-+static inline void spin_loop_pause() noexcept {
-+ asm volatile("or 31,31,31 # very low priority"); // TODO: Review and benchmark that this is the right instruction.
-+}
-+} // namespace atomic_queue
-+} // namespace paryfor
- #else
-+namespace paryfor {
-+namespace atomic_queue {
-+constexpr int CACHE_LINE_SIZE = 64; // TODO: Review that this is the correct value.
-+static inline void spin_loop_pause() noexcept {}
-+} // namespace atomic_queue
-+} // namespace paryfor
- #error "Unknown CPU architecture."
- #endif
-
-@@ -453,13 +468,13 @@ class AtomicQueue2 : public AtomicQueueCommon<AtomicQ
-
- T do_pop(unsigned tail) noexcept {
- unsigned index = details::remap_index<SHUFFLE_BITS>(tail % size_);
-- return Base::template do_pop_any(states_[index], elements_[index]);
-+ return Base::template do_pop_any<>(states_[index], elements_[index]);
- }
-
- template<class U>
- void do_push(U&& element, unsigned head) noexcept {
- unsigned index = details::remap_index<SHUFFLE_BITS>(head % size_);
-- Base::template do_push_any(std::forward<U>(element), states_[index], elements_[index]);
-+ Base::template do_push_any<>(std::forward<U>(element), states_[index], elements_[index]);
- }
-
- public:
-@@ -581,13 +596,13 @@ class AtomicQueue2B : public AtomicQueueCommon<Atomic
-
- T do_pop(unsigned tail) noexcept {
- unsigned index = details::remap_index<SHUFFLE_BITS>(tail & (size_ - 1));
-- return Base::template do_pop_any(states_[index], elements_[index]);
-+ return Base::template do_pop_any<>(states_[index], elements_[index]);
- }
-
- template<class U>
- void do_push(U&& element, unsigned head) noexcept {
- unsigned index = details::remap_index<SHUFFLE_BITS>(head & (size_ - 1));
-- Base::template do_push_any(std::forward<U>(element), states_[index], elements_[index]);
-+ Base::template do_push_any<>(std::forward<U>(element), states_[index], elements_[index]);
- }
-
- public:
diff --git a/biology/seqwish/files/patch-src_main.cpp b/biology/seqwish/files/patch-src_main.cpp
deleted file mode 100644
index 73ff8da2acdb..000000000000
--- a/biology/seqwish/files/patch-src_main.cpp
+++ /dev/null
@@ -1,24 +0,0 @@
---- src/main.cpp.orig 2023-07-21 20:57:07 UTC
-+++ src/main.cpp
-@@ -24,6 +24,8 @@
- #include "version.hpp"
- #include "tempfile.hpp"
-
-+#include <sys/param.h>
-+
- using namespace seqwish;
-
- int main(int argc, char** argv) {
-@@ -116,9 +118,10 @@ int main(int argc, char** argv) {
- if (tmp_base) {
- temp_file::set_dir(args::get(tmp_base));
- } else {
-- char* cwd = get_current_dir_name();
-+ char cwd[MAXPATHLEN];
-+ getwd(cwd);
- temp_file::set_dir(std::string(cwd));
-- free(cwd);
-+ //free(cwd);
- }
-
- temp_file::set_keep_temp(args::get(keep_temp_files));
diff --git a/biology/seqwish/files/patch-src_tempfile.cpp b/biology/seqwish/files/patch-src_tempfile.cpp
deleted file mode 100644
index 7f6c4699400d..000000000000
--- a/biology/seqwish/files/patch-src_tempfile.cpp
+++ /dev/null
@@ -1,31 +0,0 @@
---- src/tempfile.cpp.orig 2023-07-21 20:48:46 UTC
-+++ src/tempfile.cpp
-@@ -3,6 +3,8 @@
- #include <unistd.h>
- #include "tempfile.hpp"
-
-+#include <sys/param.h>
-+
- namespace temp_file {
-
- // We use this to make the API thread-safe
-@@ -96,9 +98,10 @@ namespace temp_file {
-
- // Get the default temp dir from environment variables.
- if (temp_dir.empty()) {
-- char* cwd = get_current_dir_name();
-+ char cwd[MAXPATHLEN];
-+ getwd(cwd);
- temp_dir = std::string(cwd);
-- free(cwd);
-+ //free(cwd);
- /*const char *system_temp_dir = nullptr;
- for (const char *var_name : {"TMPDIR", "TMP", "TEMP", "TEMPDIR", "USERPROFILE"}) {
- if (system_temp_dir == nullptr) {
-@@ -114,4 +117,4 @@ namespace temp_file {
- void set_keep_temp(bool setting) {
- keep_temp = setting;
- }
--}
-\ No newline at end of file
-+}