git: 0756c8333fad - main - biology/p5-transdecoder: Update to 6.0.0

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From: Jason W. Bacon <jwb_at_FreeBSD.org>
Date: Tue, 08 Sep 2026 20:12:02 UTC
The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=0756c8333fadb5ca88009cb83226de2118719663

commit 0756c8333fadb5ca88009cb83226de2118719663
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2026-09-08 20:11:13 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2026-09-08 20:11:13 +0000

    biology/p5-transdecoder: Update to 6.0.0
    
    Add single entry point wrapper script and a couple new options
    Changes: https://github.com/TransDecoder/TransDecoder/releases
    
    Reported by:    Repology
---
 biology/p5-transdecoder/Makefile  | 8 +++++---
 biology/p5-transdecoder/distinfo  | 6 +++---
 biology/p5-transdecoder/pkg-plist | 1 +
 3 files changed, 9 insertions(+), 6 deletions(-)

diff --git a/biology/p5-transdecoder/Makefile b/biology/p5-transdecoder/Makefile
index cc5ea8d2a42d..4a516c09cd74 100644
--- a/biology/p5-transdecoder/Makefile
+++ b/biology/p5-transdecoder/Makefile
@@ -1,6 +1,6 @@
 PORTNAME=	transdecoder
 DISTVERSIONPREFIX=	TransDecoder-v
-DISTVERSION=	5.7.1
+DISTVERSION=	6.0.0
 CATEGORIES=	biology perl5
 PKGNAMEPREFIX=	p5-
 
@@ -27,11 +27,13 @@ NO_ARCH=	yes
 
 PERL_MOD_DIR=	${PREFIX}/${SITE_PERL_REL}/${PORTNAME}
 PERL_UTIL_DIR=	${PREFIX}/libexec/${PORTNAME}
-SCRIPTS=	${WRKSRC}/TransDecoder.LongOrfs \
-		${WRKSRC}/TransDecoder.Predict
+SCRIPTS=	${WRKSRC}/TransDecoder \
+		${WRKSRC}/util/TransDecoder.LongOrfs \
+		${WRKSRC}/util/TransDecoder.Predict
 
 post-patch:
 	@${REINPLACE_CMD} \
+		-e 's|$$ROOT_DIR/PerlLib|${PERL_MOD_DIR}|g' \
 		-e 's|$$FindBin::RealBin/PerlLib|${PERL_MOD_DIR}|g' \
 		-e 's|$$FindBin::Bin/../PerlLib|${PERL_MOD_DIR}|g' \
 		-e 's|$$FindBin::RealBin/util|${PERL_UTIL_DIR}|g' \
diff --git a/biology/p5-transdecoder/distinfo b/biology/p5-transdecoder/distinfo
index c5d717b029ce..4fdbbb230a4b 100644
--- a/biology/p5-transdecoder/distinfo
+++ b/biology/p5-transdecoder/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1691268775
-SHA256 (transdecoder-TransDecoder-TransDecoder-v5.7.1_GH0.tar.gz) = 41dd5e95f6ba946ff21340417d867e5e99f123b4035779b25d3cffd20b828a30
-SIZE (transdecoder-TransDecoder-TransDecoder-v5.7.1_GH0.tar.gz) = 15749916
+TIMESTAMP = 1788898036
+SHA256 (transdecoder-TransDecoder-TransDecoder-v6.0.0_GH0.tar.gz) = 53892ccedba4f8163adf4ffd0ceb2af1cf6685c6bae6f00491eeae74c3829799
+SIZE (transdecoder-TransDecoder-TransDecoder-v6.0.0_GH0.tar.gz) = 15755868
diff --git a/biology/p5-transdecoder/pkg-plist b/biology/p5-transdecoder/pkg-plist
index 8ec718231222..f9467cdb3abf 100644
--- a/biology/p5-transdecoder/pkg-plist
+++ b/biology/p5-transdecoder/pkg-plist
@@ -1,3 +1,4 @@
+bin/TransDecoder
 bin/TransDecoder.LongOrfs
 bin/TransDecoder.Predict
 %%SITE_PERL%%/transdecoder/DelimParser.pm