git: e1d90c49d9e1 - main - science/py-pymatgen-core: update 2026.9.23 → 2026.10.16

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=e1d90c49d9e1610fd139450b35d08512d12738d0

commit e1d90c49d9e1610fd139450b35d08512d12738d0
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2026-10-19 02:21:26 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2026-10-19 06:26:42 +0000

    science/py-pymatgen-core: update 2026.9.23 → 2026.10.16
---
 science/py-pymatgen-core/Makefile | 10 ++++++----
 science/py-pymatgen-core/distinfo |  6 +++---
 2 files changed, 9 insertions(+), 7 deletions(-)

diff --git a/science/py-pymatgen-core/Makefile b/science/py-pymatgen-core/Makefile
index d93713d4da1f..8248cbbef021 100644
--- a/science/py-pymatgen-core/Makefile
+++ b/science/py-pymatgen-core/Makefile
@@ -1,6 +1,6 @@
 PORTNAME=	pymatgen-core
 DISTVERSIONPREFIX=	v
-DISTVERSION=	2026.9.23
+DISTVERSION=	2026.10.16
 CATEGORIES=	science python
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
@@ -28,8 +28,8 @@ RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}bibtexparser>=1:textproc/py-bibtexparser@${P
 		${PYTHON_PKGNAMEPREFIX}pandas>=2:math/py-pandas@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}plotly>=5.0:graphics/py-plotly@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}requests>=2.32.5:www/py-requests@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}scipy>=1.13.0:science/py-scipy@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}spglib>=2.5.0:science/py-spglib@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}scipy>=1.14.1:science/py-scipy@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}spglib>=2.5:science/py-spglib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}sympy>=1.3:math/py-sympy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}tabulate>=0.9.0:devel/py-tabulate@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}tqdm>=4.67.3:misc/py-tqdm@${PY_FLAVOR} \
@@ -52,6 +52,8 @@ TEST_ARGS=	--disable-plugin-autoload \
 		--deselect=tests/io/qchem/test_outputs.py::TestQCOutput::test_structural_change \
 		--deselect=tests/io/test_cif.py::TestCifIO::test_cif_parser \
 		--deselect=tests/io/test_cif.py::TestMagCif::test_bibtex \
+		--deselect=tests/io/test_phonopy.py::TestPhonopyFromForceConstants::test_get_phonon_band_structure_from_fc \
+		--deselect=tests/io/test_phonopy.py::TestPhonopyFromForceConstants::test_get_phonon_dos_from_fc \
 		--deselect=tests/util/test_provenance.py::TestStructureNL::test_authors \
 		--deselect=tests/util/test_provenance.py::TestStructureNL::test_references \
 		--deselect=tests/util/test_provenance.py::TestStructureNL::test_eq \
@@ -66,6 +68,6 @@ post-patch:
 	@${REINPLACE_CMD} -e 's|np.linalg.det(scale_matrix)|round(float(np.linalg.det(scale_matrix)))|' \
 		${WRKSRC}/src/pymatgen/core/structure.py
 
-# tests as of 2026.9.23: 2899 passed, 334 skipped, 10 deselected, 4 xfailed, 63 warnings in 581.35s (0:09:41)
+# tests as of 2026.10.16: 2870 passed, 359 skipped, 12 deselected, 3 xfailed, 55 warnings in 937.59s (0:15:37)
 
 .include <bsd.port.mk>
diff --git a/science/py-pymatgen-core/distinfo b/science/py-pymatgen-core/distinfo
index 2cf1874910a3..bf455f9d6fc5 100644
--- a/science/py-pymatgen-core/distinfo
+++ b/science/py-pymatgen-core/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1790136104
-SHA256 (materialsproject-pymatgen-core-v2026.9.23_GH0.tar.gz) = ad00f49c5bc9b9aa67e4bf7b74334c236490382dc424ad6e5f4f6798ff76453c
-SIZE (materialsproject-pymatgen-core-v2026.9.23_GH0.tar.gz) = 227818899
+TIMESTAMP = 1792360907
+SHA256 (materialsproject-pymatgen-core-v2026.10.16_GH0.tar.gz) = 53f3c0e633383d34e775cbe1f34a72c55413aaf21bb5756b14e0a66527a5f8b3
+SIZE (materialsproject-pymatgen-core-v2026.10.16_GH0.tar.gz) = 227832419