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Date: Thu, 08 Oct 2026 13:42:48 UTC
The branch main has been updated by jwb:
URL: https://cgit.FreeBSD.org/ports/commit/?id=2414383046ebd2d1abafe9b901575b9c219fe33b
commit 2414383046ebd2d1abafe9b901575b9c219fe33b
Author: Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2026-10-08 13:33:12 +0000
Commit: Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2026-10-08 13:42:17 +0000
Release numerous ports to ports@
I've been retired for a few years, and it is unlikely I will be doing
any more scientific computing support in the future. I have continued
to maintain ~160 ports to the best of my ability, mainly as a favor to
the community, but I can no longer justify the time and effort
required. I am therefore releasing most of my scientific ports, along
with a few others, to ports@. I will continue to maintain ports I am
actively using and those for which I am upstream.
---
archivers/libarchive-qt/Makefile | 2 +-
archivers/py-lzstring/Makefile | 2 +-
archivers/streamvbyte/Makefile | 2 +-
archivers/vbz-compression/Makefile | 2 +-
biology/atac-seq/Makefile | 2 +-
biology/bamtools/Makefile | 2 +-
biology/bamutil/Makefile | 2 +-
biology/bbmap/Makefile | 2 +-
biology/bcf-score/Makefile | 2 +-
biology/bcftools/Makefile | 2 +-
biology/bedtools/Makefile | 2 +-
biology/bfc/Makefile | 2 +-
biology/bifrost/Makefile | 2 +-
biology/bio-mocha/Makefile | 2 +-
biology/bioawk/Makefile | 2 +-
biology/bolt-lmm/Makefile | 2 +-
biology/bowtie/Makefile | 2 +-
biology/bowtie2/Makefile | 2 +-
biology/canu/Makefile | 2 +-
biology/cd-hit/Makefile | 2 +-
biology/cdbfasta/Makefile | 2 +-
biology/clustal-omega/Makefile | 2 +-
biology/clustalw/Makefile | 2 +-
biology/erminej/Makefile | 2 +-
biology/fastahack/Makefile | 2 +-
biology/fastool/Makefile | 2 +-
biology/fastqc/Makefile | 2 +-
biology/fasttree/Makefile | 2 +-
biology/fastx-toolkit/Makefile | 2 +-
biology/flash/Makefile | 2 +-
biology/freebayes/Makefile | 2 +-
biology/gcta/Makefile | 2 +-
biology/gemma/Makefile | 2 +-
biology/gffread/Makefile | 2 +-
biology/gmap/Makefile | 2 +-
biology/haplohseq/Makefile | 2 +-
biology/hisat2/Makefile | 2 +-
biology/htslib/Makefile | 2 +-
biology/jellyfish/Makefile | 2 +-
biology/kallisto/Makefile | 2 +-
biology/libgff/Makefile | 2 +-
biology/libgtextutils/Makefile | 2 +-
biology/mca-calling/Makefile | 2 +-
biology/megahit/Makefile | 2 +-
biology/minimap2/Makefile | 2 +-
biology/mmseqs2/Makefile | 2 +-
biology/ncbi-blast+/Makefile | 2 +-
biology/ncbi-entrez-direct/Makefile | 2 +-
biology/p5-transdecoder/Makefile | 2 +-
biology/picard-tools/Makefile | 2 +-
biology/preseq/Makefile | 2 +-
biology/py-bcbio-gff/Makefile | 2 +-
biology/py-crossmap/Makefile | 2 +-
biology/py-deeptools/Makefile | 2 +-
biology/py-deeptoolsintervals/Makefile | 2 +-
biology/py-dna-features-viewer/Makefile | 2 +-
biology/py-goatools/Makefile | 2 +-
biology/py-macs3/Makefile | 2 +-
biology/py-multiqc/Makefile | 2 +-
biology/py-ont-fast5-api/Makefile | 2 +-
biology/py-py2bit/Makefile | 2 +-
biology/py-pybigwig/Makefile | 2 +-
biology/py-pydeseq2/Makefile | 2 +-
biology/py-pywgsim/Makefile | 2 +-
biology/rainbow/Makefile | 2 +-
biology/readseq/Makefile | 2 +-
biology/rna-seq/Makefile | 2 +-
biology/salmon/Makefile | 2 +-
biology/sam2pairwise/Makefile | 2 +-
biology/samtools/Makefile | 2 +-
biology/seqtk/Makefile | 2 +-
biology/slclust/Makefile | 2 +-
biology/smithwaterman/Makefile | 2 +-
biology/sra-tools/Makefile | 2 +-
biology/stacks/Makefile | 2 +-
biology/star/Makefile | 2 +-
biology/subread/Makefile | 2 +-
biology/tabixpp/Makefile | 2 +-
biology/trimadap/Makefile | 2 +-
biology/ucsc-userapps/Makefile | 2 +-
biology/vcflib/Makefile | 2 +-
biology/vcftools/Makefile | 2 +-
biology/vsearch/Makefile | 2 +-
biology/vt/Makefile | 2 +-
biology/wfa2-lib/Makefile | 2 +-
comms/cutecom/Makefile | 2 +-
devel/R-cran-getopt/Makefile | 2 +-
devel/R-cran-optparse/Makefile | 2 +-
devel/cppcodec/Makefile | 2 +-
devel/intervaltree/Makefile | 2 +-
devel/py-cykhash/Makefile | 2 +-
devel/py-rich-click/Makefile | 2 +-
devel/yaggo/Makefile | 2 +-
ftp/py-ftpretty/Makefile | 2 +-
graphics/py-kaleido/Makefile | 2 +-
graphics/py-spectra/Makefile | 2 +-
math/multichoose/Makefile | 2 +-
math/py-colormath2/Makefile | 2 +-
math/py-formulaic-contrasts/Makefile | 2 +-
math/py-hmmlearn/Makefile | 2 +-
science/csvtk/Makefile | 2 +-
science/fsom/Makefile | 2 +-
science/fvcom/Makefile | 2 +-
science/voro++/Makefile | 2 +-
sysutils/parafly/Makefile | 2 +-
www/py-choreographer/Makefile | 2 +-
x11/lilyterm/Makefile | 2 +-
107 files changed, 107 insertions(+), 107 deletions(-)
diff --git a/archivers/libarchive-qt/Makefile b/archivers/libarchive-qt/Makefile
index 3412f0102799..5930050a2a8a 100644
--- a/archivers/libarchive-qt/Makefile
+++ b/archivers/libarchive-qt/Makefile
@@ -2,7 +2,7 @@ PORTNAME= libarchive-qt
DISTVERSION= 2.0.8
CATEGORIES= archivers
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Qt based archiving solution with libarchive backend
WWW= https://gitlab.com/marcusbritanicus/libarchive-qt
diff --git a/archivers/py-lzstring/Makefile b/archivers/py-lzstring/Makefile
index 6225788b4b7e..1bb93658c1ee 100644
--- a/archivers/py-lzstring/Makefile
+++ b/archivers/py-lzstring/Makefile
@@ -5,7 +5,7 @@ CATEGORIES= archivers python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= LZ-based in-memory string compression
WWW= https://pypi.python.org/pypi/lzstring
diff --git a/archivers/streamvbyte/Makefile b/archivers/streamvbyte/Makefile
index 4f255f112df2..742f42506aeb 100644
--- a/archivers/streamvbyte/Makefile
+++ b/archivers/streamvbyte/Makefile
@@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v
DISTVERSION= 3.0.0
CATEGORIES= archivers
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Integer compression with SIMD based on Google\'s varint
WWW= https://github.com/lemire/streamvbyte/
diff --git a/archivers/vbz-compression/Makefile b/archivers/vbz-compression/Makefile
index 5c422d98f6d6..99a0222f0ba7 100644
--- a/archivers/vbz-compression/Makefile
+++ b/archivers/vbz-compression/Makefile
@@ -2,7 +2,7 @@ PORTNAME= vbz-compression
DISTVERSION= 1.0.13
CATEGORIES= archivers
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Variable byte integer encoding to compress Oxford Nanopore signal data
WWW= https://github.com/nanoporetech/vbz_compression
diff --git a/biology/atac-seq/Makefile b/biology/atac-seq/Makefile
index 52004a530947..1f73a1c8771a 100644
--- a/biology/atac-seq/Makefile
+++ b/biology/atac-seq/Makefile
@@ -6,7 +6,7 @@ DISTVERSION= 0.3.1
CATEGORIES= biology python
MASTER_SITES= # empty
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Metaport for ATAC-Seq analysis
WWW= https://github.com/auerlab/
diff --git a/biology/bamtools/Makefile b/biology/bamtools/Makefile
index 775c1f88cb59..b1b3e1b0408c 100644
--- a/biology/bamtools/Makefile
+++ b/biology/bamtools/Makefile
@@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v
DISTVERSION= 2.5.3
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= API and toolkit for handling BAM files
WWW= https://github.com/pezmaster31/bamtools
diff --git a/biology/bamutil/Makefile b/biology/bamutil/Makefile
index 485df533807e..d577de05b407 100644
--- a/biology/bamutil/Makefile
+++ b/biology/bamutil/Makefile
@@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v
DISTVERSION= 1.0.15
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Utilities for working with SAM/BAM files
WWW= https://github.com/statgen/bamUtil
diff --git a/biology/bbmap/Makefile b/biology/bbmap/Makefile
index 0e30158fa4b0..bca845c676d8 100644
--- a/biology/bbmap/Makefile
+++ b/biology/bbmap/Makefile
@@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v
DISTVERSION= 40.02
CATEGORIES= biology java
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= BBMap short read aligner, and other bioinformatic tools
WWW= https://jgi.doe.gov/data-and-tools/bbtools/ \
https://sourceforge.net/projects/bbmap/ \
diff --git a/biology/bcf-score/Makefile b/biology/bcf-score/Makefile
index dc846f339fad..a5e07c81b452 100644
--- a/biology/bcf-score/Makefile
+++ b/biology/bcf-score/Makefile
@@ -6,7 +6,7 @@ MASTER_SITES= https://software.broadinstitute.org/software/score/
# Get this right, or ports will download bcftools in it's place via tuple
DISTFILES+= score_${DISTVERSION}-20240505.tar.gz
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Bcftools plugins for GWAS-VCF summary statistics files
WWW= https://software.broadinstitute.org/software/score/
diff --git a/biology/bcftools/Makefile b/biology/bcftools/Makefile
index b810f468bf09..75ad504dee8a 100644
--- a/biology/bcftools/Makefile
+++ b/biology/bcftools/Makefile
@@ -2,7 +2,7 @@ PORTNAME= bcftools
PORTVERSION= 1.24
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Tools for manipulating next-generation sequencing data
WWW= https://www.htslib.org/
diff --git a/biology/bedtools/Makefile b/biology/bedtools/Makefile
index 4f0b519d87f5..4b0b18c09ec7 100644
--- a/biology/bedtools/Makefile
+++ b/biology/bedtools/Makefile
@@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v
DISTVERSION= 2.31.1
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Toolset for genome set arithmetic such as intersect, union
WWW= https://bedtools.readthedocs.org/
diff --git a/biology/bfc/Makefile b/biology/bfc/Makefile
index 30f810f8b92c..c99e05f120f4 100644
--- a/biology/bfc/Makefile
+++ b/biology/bfc/Makefile
@@ -2,7 +2,7 @@ PORTNAME= bfc
DISTVERSION= g20150417
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Correct sequencing errors from Illumina sequencing data
WWW= https://github.com/lh3/bfc
diff --git a/biology/bifrost/Makefile b/biology/bifrost/Makefile
index ce926335a5ea..bc20244d08f0 100644
--- a/biology/bifrost/Makefile
+++ b/biology/bifrost/Makefile
@@ -2,7 +2,7 @@ PORTNAME= bifrost
DISTVERSION= 1.3.9
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Parallel construction, indexing and querying of de Bruijn graphs
WWW= https://github.com/pmelsted/bifrost
diff --git a/biology/bio-mocha/Makefile b/biology/bio-mocha/Makefile
index c8c229801d1c..139729901513 100644
--- a/biology/bio-mocha/Makefile
+++ b/biology/bio-mocha/Makefile
@@ -5,7 +5,7 @@ MASTER_SITES= https://software.broadinstitute.org/software/mocha/
# Get this right, or ports will download bcftools in it's place via tuple
DISTFILES+= ${PORTNAME}_${DISTVERSION}-20250819.tar.gz
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Bcftools plugin for mosaic chromosomal alteration analysis
WWW= https://software.broadinstitute.org/software/mocha/
diff --git a/biology/bioawk/Makefile b/biology/bioawk/Makefile
index c5bccd238213..9637b3504645 100644
--- a/biology/bioawk/Makefile
+++ b/biology/bioawk/Makefile
@@ -4,7 +4,7 @@ DISTVERSION= 1.0-7
DISTVERSIONSUFFIX= -gfd40150
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= BWK awk modified for biological data
WWW= https://github.com/lh3/bioawk
diff --git a/biology/bolt-lmm/Makefile b/biology/bolt-lmm/Makefile
index e730d1380c77..3f3a07a0081f 100644
--- a/biology/bolt-lmm/Makefile
+++ b/biology/bolt-lmm/Makefile
@@ -5,7 +5,7 @@ CATEGORIES= biology
MASTER_SITES= https://data.broadinstitute.org/alkesgroup/BOLT-LMM/downloads/
DISTNAME= BOLT-LMM_v${PORTVERSION}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Mixed model association testing and variance component analysis
WWW= https://data.broadinstitute.org/alkesgroup/BOLT-LMM/
diff --git a/biology/bowtie/Makefile b/biology/bowtie/Makefile
index bf49e6f6b9da..ce43a536c873 100644
--- a/biology/bowtie/Makefile
+++ b/biology/bowtie/Makefile
@@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v
DISTVERSION= 1.3.1
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Ultrafast, memory-efficient short read aligner
WWW= https://bowtie-bio.sourceforge.net/index.shtml
diff --git a/biology/bowtie2/Makefile b/biology/bowtie2/Makefile
index 90c2e22f7663..afd5fa7609ad 100644
--- a/biology/bowtie2/Makefile
+++ b/biology/bowtie2/Makefile
@@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v
DISTVERSION= 2.5.5
CATEGORIES= biology perl5 python
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Ultrafast, memory-efficient short read aligner
WWW= https://github.com/BenLangmead/bowtie2
diff --git a/biology/canu/Makefile b/biology/canu/Makefile
index 63c58adf20e8..eed8992d6524 100644
--- a/biology/canu/Makefile
+++ b/biology/canu/Makefile
@@ -4,7 +4,7 @@ CATEGORIES= biology java perl5
# Github auto-generated tarballs lack submodules
MASTER_SITES= https://github.com/marbl/canu/releases/download/v${DISTVERSION}/
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Single molecule sequence assembler
WWW= https://github.com/marbl/canu
diff --git a/biology/cd-hit/Makefile b/biology/cd-hit/Makefile
index e6e811ff7b26..864bb668c9c4 100644
--- a/biology/cd-hit/Makefile
+++ b/biology/cd-hit/Makefile
@@ -4,7 +4,7 @@ DISTVERSION= 4.8.1
PORTREVISION= 3
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Clustering and comparing protein or nucleotide sequences
WWW= http://weizhong-lab.ucsd.edu/cd-hit/
diff --git a/biology/cdbfasta/Makefile b/biology/cdbfasta/Makefile
index cca69dda1744..40eb10f4397d 100644
--- a/biology/cdbfasta/Makefile
+++ b/biology/cdbfasta/Makefile
@@ -2,7 +2,7 @@ PORTNAME= cdbfasta
PORTVERSION= 2023.07.10
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Fast indexing and retrieval of FASTA records from flat file databases
WWW= https://github.com/gpertea/cdbfasta
diff --git a/biology/clustal-omega/Makefile b/biology/clustal-omega/Makefile
index 52e65cb1c170..7ea6b52b7fc4 100644
--- a/biology/clustal-omega/Makefile
+++ b/biology/clustal-omega/Makefile
@@ -3,7 +3,7 @@ DISTVERSION= 1.2.4
CATEGORIES= biology
MASTER_SITES= http://www.clustal.org/omega/
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Multiple alignment of nucleic acid and protein, replaces clustalw
WWW= http://www.clustal.org/omega/
diff --git a/biology/clustalw/Makefile b/biology/clustalw/Makefile
index 12681db40423..569ea987b828 100644
--- a/biology/clustalw/Makefile
+++ b/biology/clustalw/Makefile
@@ -5,7 +5,7 @@ CATEGORIES= biology
MASTER_SITES= ftp://ftp.ebi.ac.uk/pub/software/clustalw2/${PORTVERSION}/ \
http://www.clustal.org/download/${PORTVERSION}/
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Multiple alignment program for DNA or proteins
WWW= http://www.clustal.org/
diff --git a/biology/erminej/Makefile b/biology/erminej/Makefile
index 9816cfb89f51..a00f3808973e 100644
--- a/biology/erminej/Makefile
+++ b/biology/erminej/Makefile
@@ -5,7 +5,7 @@ CATEGORIES= biology java
MASTER_SITES= http://home.pavlab.msl.ubc.ca/ermineJ/distributions/
DISTNAME= ermineJ-${DISTVERSION}-generic-bundle
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Analyses of gene sets such as gene expression profiling studies
WWW= https://erminej.msl.ubc.ca/
diff --git a/biology/fastahack/Makefile b/biology/fastahack/Makefile
index 6158082d20b7..dbceec892e5a 100644
--- a/biology/fastahack/Makefile
+++ b/biology/fastahack/Makefile
@@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v
DISTVERSION= 1.0.0
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Utility for indexing and sequence extraction from FASTA files
WWW= https://github.com/ekg/fastahack
diff --git a/biology/fastool/Makefile b/biology/fastool/Makefile
index 8248abeaeb7d..460150341cbf 100644
--- a/biology/fastool/Makefile
+++ b/biology/fastool/Makefile
@@ -2,7 +2,7 @@ PORTNAME= fastool
PORTVERSION= 0.1.4
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Simple and quick FastQ and FastA tool for file reading and conversion
WWW= https://github.com/fstrozzi/Fastool
diff --git a/biology/fastqc/Makefile b/biology/fastqc/Makefile
index ecc5061e633c..932f5c8cc993 100644
--- a/biology/fastqc/Makefile
+++ b/biology/fastqc/Makefile
@@ -5,7 +5,7 @@ CATEGORIES= biology java perl5
MASTER_SITES= https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
DISTNAME= ${PORTNAME}_v${DISTVERSIONPREFIX}${DISTVERSION}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Quality control tool for high throughput sequence data
WWW= https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
diff --git a/biology/fasttree/Makefile b/biology/fasttree/Makefile
index 47ede864ea6f..ffc96efd33c2 100644
--- a/biology/fasttree/Makefile
+++ b/biology/fasttree/Makefile
@@ -4,7 +4,7 @@ CATEGORIES= biology
MASTER_SITES= https://www.microbesonline.org/fasttree/
EXTRACT_SUFX= .c
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Approximately-maximum-likelihood phylogenetic trees from alignments
WWW= https://www.microbesonline.org/fasttree/
diff --git a/biology/fastx-toolkit/Makefile b/biology/fastx-toolkit/Makefile
index 178e25f12f0c..d519857c474f 100644
--- a/biology/fastx-toolkit/Makefile
+++ b/biology/fastx-toolkit/Makefile
@@ -3,7 +3,7 @@ DISTVERSION= 0.0.14
PORTREVISION= 1
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= CLI tools for Short-Reads FASTA/FASTQ files preprocessing
WWW= http://hannonlab.cshl.edu/fastx_toolkit/
diff --git a/biology/flash/Makefile b/biology/flash/Makefile
index 7c33bb9ba325..0ccfcb61afc8 100644
--- a/biology/flash/Makefile
+++ b/biology/flash/Makefile
@@ -4,7 +4,7 @@ CATEGORIES= biology
MASTER_SITES= http://ccb.jhu.edu/software/FLASH/
DISTNAME= FLASH-${DISTVERSION}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Fast Length Adjustment of SHort reads
WWW= https://ccb.jhu.edu/software/FLASH/
diff --git a/biology/freebayes/Makefile b/biology/freebayes/Makefile
index 90382bac8968..a08be0b725cd 100644
--- a/biology/freebayes/Makefile
+++ b/biology/freebayes/Makefile
@@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v
DISTVERSION= 1.3.10
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Bayesian haplotype-based polymorphism discovery and genotyping
WWW= https://github.com/ekg/freebayes
diff --git a/biology/gcta/Makefile b/biology/gcta/Makefile
index a381623be80e..d401d36e5f5b 100644
--- a/biology/gcta/Makefile
+++ b/biology/gcta/Makefile
@@ -4,7 +4,7 @@ DISTVERSION= 1.94.1
PORTREVISION= 6
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Genome-wide Complex Trait Analysis
WWW= https://cnsgenomics.com/software/gcta/index.html
diff --git a/biology/gemma/Makefile b/biology/gemma/Makefile
index 0abaa28c5056..d337ff2fb8e3 100644
--- a/biology/gemma/Makefile
+++ b/biology/gemma/Makefile
@@ -4,7 +4,7 @@ DISTVERSION= 0.98.5
PORTREVISION= 3
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Genome-wide Efficient Mixed Model Association
WWW= https://xiangzhou.github.io/software/ \
https://github.com/genetics-statistics/GEMMA/
diff --git a/biology/gffread/Makefile b/biology/gffread/Makefile
index eb96cebdf8cb..74f367ba32f4 100644
--- a/biology/gffread/Makefile
+++ b/biology/gffread/Makefile
@@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v
DISTVERSION= 0.12.9
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= GFF/GTF format conversions, filtering, FASTA extraction, etc
WWW= https://ccb.jhu.edu/software/stringtie/gff.shtml#gffread
diff --git a/biology/gmap/Makefile b/biology/gmap/Makefile
index 0022e9cf09c4..f9263ae2b905 100644
--- a/biology/gmap/Makefile
+++ b/biology/gmap/Makefile
@@ -4,7 +4,7 @@ CATEGORIES= biology
MASTER_SITES= http://research-pub.gene.com/gmap/src/
DISTNAME= ${PORTNAME}-gsnap-${PORTVERSION:C|\.|-|g}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Genomic Mapping and Alignment Program for mRNA and EST Sequences
WWW= https://github.com/genentech/gmap-gsnap \
http://research-pub.gene.com/gmap/
diff --git a/biology/haplohseq/Makefile b/biology/haplohseq/Makefile
index c0c1bec8cd08..50c3cc565357 100644
--- a/biology/haplohseq/Makefile
+++ b/biology/haplohseq/Makefile
@@ -4,7 +4,7 @@ PORTREVISION= 4
DISTVERSIONSUFFIX= -gfeb9267
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Identify regions of allelic imbalance
WWW= https://github.com/outpaddling/haplohseq \
https://sites.google.com/site/integrativecancergenomics/software/haplohseq
diff --git a/biology/hisat2/Makefile b/biology/hisat2/Makefile
index f384a85919b2..3d1354589181 100644
--- a/biology/hisat2/Makefile
+++ b/biology/hisat2/Makefile
@@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v
DISTVERSION= 2.2.3
CATEGORIES= biology perl5 python
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Alignment program for mapping next-generation sequencing reads
WWW= https://ccb.jhu.edu/software/hisat2/index.shtml
diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile
index 8ddb1d2aace4..5c9ce68895cb 100644
--- a/biology/htslib/Makefile
+++ b/biology/htslib/Makefile
@@ -5,7 +5,7 @@ CATEGORIES= biology devel
# Github generated distfiles are incomplete, so use custom tarball
MASTER_SITES= https://github.com/samtools/htslib/releases/download/${DISTVERSION}/
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= C library for high-throughput sequencing data formats
WWW= https://www.htslib.org/
diff --git a/biology/jellyfish/Makefile b/biology/jellyfish/Makefile
index fb41abe4c10e..de44dfd87c8f 100644
--- a/biology/jellyfish/Makefile
+++ b/biology/jellyfish/Makefile
@@ -3,7 +3,7 @@ DISTVERSION= 2.3.1
CATEGORIES= biology
MASTER_SITES= https://github.com/gmarcais/${PORTNAME}/releases/download/v${DISTVERSION}/ # Custom distfile reduces dependencies
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Fast, memory-efficient counting of k-mers in DNA
WWW= https://www.genome.umd.edu/jellyfish.html
diff --git a/biology/kallisto/Makefile b/biology/kallisto/Makefile
index 50805d2b992c..33be5ca55fa6 100644
--- a/biology/kallisto/Makefile
+++ b/biology/kallisto/Makefile
@@ -4,7 +4,7 @@ DISTVERSION= 0.52.0
PORTEPOCH= 1
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Quantify abundances of transcripts from RNA-Seq data
WWW= https://pachterlab.github.io/kallisto/about.html
diff --git a/biology/libgff/Makefile b/biology/libgff/Makefile
index eb261c5a69d4..8a84715c4683 100644
--- a/biology/libgff/Makefile
+++ b/biology/libgff/Makefile
@@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v
DISTVERSION= 2.0.1
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= GFF/GTF parsing library based on GCLib
WWW= https://github.com/COMBINE-lab/libgff
diff --git a/biology/libgtextutils/Makefile b/biology/libgtextutils/Makefile
index 42de16d77368..467731cddd9b 100644
--- a/biology/libgtextutils/Makefile
+++ b/biology/libgtextutils/Makefile
@@ -2,7 +2,7 @@ PORTNAME= libgtextutils
DISTVERSION= 0.7
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Gordon's text utilities
WWW= https://github.com/agordon/libgtextutils
diff --git a/biology/mca-calling/Makefile b/biology/mca-calling/Makefile
index 5f2afd08795f..51905632a496 100644
--- a/biology/mca-calling/Makefile
+++ b/biology/mca-calling/Makefile
@@ -3,7 +3,7 @@ DISTVERSION= 0.1.0
CATEGORIES= biology
MASTER_SITES= # empty
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Core tools for Mosaic Chromosomal Alteration event calling
WWW= https://github.com/auerlab/
diff --git a/biology/megahit/Makefile b/biology/megahit/Makefile
index 7d3a672296e5..6448eb402c0a 100644
--- a/biology/megahit/Makefile
+++ b/biology/megahit/Makefile
@@ -4,7 +4,7 @@ DISTVERSION= 1.2.9-22
DISTVERSIONSUFFIX= -gc77d45c
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Ultra-fast single-node large and complex metagenomics assembly
WWW= https://github.com/voutcn/megahit
diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile
index 879c4d525a8a..dfdeb0421e27 100644
--- a/biology/minimap2/Makefile
+++ b/biology/minimap2/Makefile
@@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v
DISTVERSION= 2.31
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Pairwise aligner for genomic and spliced nucleotide sequences
WWW= https://github.com/lh3/minimap2
diff --git a/biology/mmseqs2/Makefile b/biology/mmseqs2/Makefile
index 17e450037c93..45d47211b576 100644
--- a/biology/mmseqs2/Makefile
+++ b/biology/mmseqs2/Makefile
@@ -2,7 +2,7 @@ PORTNAME= MMseqs2
DISTVERSION= 17-b804f
CATEGORIES= biology
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Ultra fast and sensitive sequence search and clustering suite
WWW= https://github.com/soedinglab/MMseqs2/
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index ae0046a50c1c..ea44d0d33bad 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -6,7 +6,7 @@ MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/
DISTNAME= ncbi-blast-${PORTVERSION}+-src
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= NCBI implementation of Basic Local Alignment Search Tool
WWW= https://blast.ncbi.nlm.nih.gov/
diff --git a/biology/ncbi-entrez-direct/Makefile b/biology/ncbi-entrez-direct/Makefile
index 876c25a31357..47342629a1f3 100644
--- a/biology/ncbi-entrez-direct/Makefile
+++ b/biology/ncbi-entrez-direct/Makefile
@@ -6,7 +6,7 @@ MASTER_SITES= ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/${PORTVERS
DISTFILES= edirect.tar.gz
DIST_SUBDIR= edirect-${PORTVERSION}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Access to the NCBI's suite of interconnected databases
WWW= https://www.ncbi.nlm.nih.gov/books/NBK179288/
diff --git a/biology/p5-transdecoder/Makefile b/biology/p5-transdecoder/Makefile
index 68052a6dc3d1..378f92639fbd 100644
--- a/biology/p5-transdecoder/Makefile
+++ b/biology/p5-transdecoder/Makefile
@@ -4,7 +4,7 @@ DISTVERSION= 6.0.0
CATEGORIES= biology perl5
PKGNAMEPREFIX= p5-
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Identify candidate coding regions within transcript sequences
WWW= https://github.com/TransDecoder/TransDecoder
diff --git a/biology/picard-tools/Makefile b/biology/picard-tools/Makefile
index bf250a7fe878..363257f38e88 100644
--- a/biology/picard-tools/Makefile
+++ b/biology/picard-tools/Makefile
@@ -6,7 +6,7 @@ PKGNAMESUFFIX= -tools
DISTNAME= ${PORTNAME}
EXTRACT_SUFX= .jar
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= CLI tools for manipulating high-throughput sequencing (HTS) data
WWW= https://github.com/broadinstitute/picard
diff --git a/biology/preseq/Makefile b/biology/preseq/Makefile
index 68a11c680f53..75da8dfcb823 100644
--- a/biology/preseq/Makefile
+++ b/biology/preseq/Makefile
@@ -4,7 +4,7 @@ CATEGORIES= biology
# Github-generated distfiles are incomplete
MASTER_SITES= https://github.com/smithlabcode/preseq/releases/download/v${DISTVERSION}/
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Predict yield of distinct reads from a genomic library
WWW= https://github.com/smithlabcode/preseq
diff --git a/biology/py-bcbio-gff/Makefile b/biology/py-bcbio-gff/Makefile
index 19a2ff432d23..da14be04424e 100644
--- a/biology/py-bcbio-gff/Makefile
+++ b/biology/py-bcbio-gff/Makefile
@@ -5,7 +5,7 @@ CATEGORIES= biology python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Read and write Generic Feature Format (GFF) with Biopython integration
WWW= https://github.com/chapmanb/bcbb/tree/master/gff/
diff --git a/biology/py-crossmap/Makefile b/biology/py-crossmap/Makefile
index 0a786cab1a40..0fc472bca246 100644
--- a/biology/py-crossmap/Makefile
+++ b/biology/py-crossmap/Makefile
@@ -4,7 +4,7 @@ CATEGORIES= biology python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Lift over genomics coordinates between assemblies
WWW= https://github.com/liguowang/CrossMap
diff --git a/biology/py-deeptools/Makefile b/biology/py-deeptools/Makefile
index 64cda435743f..c7bf7d17b2e3 100644
--- a/biology/py-deeptools/Makefile
+++ b/biology/py-deeptools/Makefile
@@ -5,7 +5,7 @@ MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
DISTNAME= deeptools-${DISTVERSION}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= User-friendly tools for exploring deep-sequencing data
WWW= https://github.com/deeptools/deepTools
diff --git a/biology/py-deeptoolsintervals/Makefile b/biology/py-deeptoolsintervals/Makefile
index 003296ac6d01..01542c92bbb8 100644
--- a/biology/py-deeptoolsintervals/Makefile
+++ b/biology/py-deeptoolsintervals/Makefile
@@ -5,7 +5,7 @@ CATEGORIES= biology python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Python interface for deepTools interval trees
WWW= https://github.com/deeptools/deeptools_intervals
diff --git a/biology/py-dna-features-viewer/Makefile b/biology/py-dna-features-viewer/Makefile
index 2e75580db9af..e22ed6ada896 100644
--- a/biology/py-dna-features-viewer/Makefile
+++ b/biology/py-dna-features-viewer/Makefile
@@ -5,7 +5,7 @@ MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
DISTNAME= dna_features_viewer-${PORTVERSION}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Python library to visualize DNA features, e.g. GenBank or Gff files
WWW= https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer
diff --git a/biology/py-goatools/Makefile b/biology/py-goatools/Makefile
index c922c7931587..59522b0abc11 100644
--- a/biology/py-goatools/Makefile
+++ b/biology/py-goatools/Makefile
@@ -4,7 +4,7 @@ CATEGORIES= biology python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Tools for processing and visualizing Gene Ontology terms
WWW= https://github.com/tanghaibao/goatools/
diff --git a/biology/py-macs3/Makefile b/biology/py-macs3/Makefile
index 27bf458886b4..497e344e1a68 100644
--- a/biology/py-macs3/Makefile
+++ b/biology/py-macs3/Makefile
@@ -4,7 +4,7 @@ DISTVERSION= 3.0.5
CATEGORIES= biology python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Peak caller aimed at transcription factor binding sites
WWW= https://github.com/taoliu/MACS
diff --git a/biology/py-multiqc/Makefile b/biology/py-multiqc/Makefile
index 18886fbff1fe..33f938fa270c 100644
--- a/biology/py-multiqc/Makefile
+++ b/biology/py-multiqc/Makefile
@@ -7,7 +7,7 @@ CATEGORIES= biology python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Aggregate bioinformatics analysis reports across samples and tools
WWW= https://github.com/MultiQC/MultiQC
diff --git a/biology/py-ont-fast5-api/Makefile b/biology/py-ont-fast5-api/Makefile
index adfb3dc5fdca..c2126d235431 100644
--- a/biology/py-ont-fast5-api/Makefile
+++ b/biology/py-ont-fast5-api/Makefile
@@ -4,7 +4,7 @@ DISTVERSION= 4.1.3
CATEGORIES= biology python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Interface to HDF5 files in Oxford Nanopore .fast5 format
WWW= https://github.com/nanoporetech/ont_fast5_api
diff --git a/biology/py-py2bit/Makefile b/biology/py-py2bit/Makefile
index 466799839af8..82cfb4e05c9e 100644
--- a/biology/py-py2bit/Makefile
+++ b/biology/py-py2bit/Makefile
@@ -4,7 +4,7 @@ CATEGORIES= biology python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Python interface for 2bit packed nucleotide files
WWW= https://github.com/deeptools/py2bit
diff --git a/biology/py-pybigwig/Makefile b/biology/py-pybigwig/Makefile
index cc6700c454fb..e7f507e5f7d6 100644
--- a/biology/py-pybigwig/Makefile
+++ b/biology/py-pybigwig/Makefile
@@ -5,7 +5,7 @@ CATEGORIES= biology python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Python access to bigWig files using libBigWig
WWW= https://github.com/deeptools/pyBigWig/
diff --git a/biology/py-pydeseq2/Makefile b/biology/py-pydeseq2/Makefile
index ca4f97fa32e9..a9126c59e768 100644
--- a/biology/py-pydeseq2/Makefile
+++ b/biology/py-pydeseq2/Makefile
@@ -4,7 +4,7 @@ CATEGORIES= biology python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Python implementation of the popular DESeq2 R package
WWW= https://github.com/owkin/PyDESeq2
diff --git a/biology/py-pywgsim/Makefile b/biology/py-pywgsim/Makefile
index 51411e77ee7f..c47313986398 100644
--- a/biology/py-pywgsim/Makefile
+++ b/biology/py-pywgsim/Makefile
@@ -4,7 +4,7 @@ CATEGORIES= biology python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Modified wgsim genomic data simulator
WWW= https://github.com/ialbert/pywgsim/
diff --git a/biology/rainbow/Makefile b/biology/rainbow/Makefile
index f6efc6f1fe80..2ba61ad232dc 100644
--- a/biology/rainbow/Makefile
+++ b/biology/rainbow/Makefile
@@ -4,7 +4,7 @@ CATEGORIES= biology
MASTER_SITES= SF/bio-rainbow
DISTNAME= rainbow_${PORTVERSION}
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Efficient clustering and assembling of short reads, especially for RAD
WWW= https://sourceforge.net/projects/bio-rainbow/
diff --git a/biology/readseq/Makefile b/biology/readseq/Makefile
index 1096bb1241a0..25239291bb36 100644
--- a/biology/readseq/Makefile
+++ b/biology/readseq/Makefile
@@ -8,7 +8,7 @@ MASTER_SITES= https://sourceforge.net/projects/readseq/files/latest/
DISTNAME= ${PORTNAME}
EXTRACT_SUFX= .jar
-MAINTAINER= jwb@FreeBSD.org
+MAINTAINER= ports@FreeBSD.org
COMMENT= Read and reformat biosequences, Java command-line version
WWW= https://sourceforge.net/projects/readseq
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