git: 20a3f9548d28 - main - biology/htslib: Remove obsolete patches
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Date: Thu, 08 Oct 2026 13:30:22 UTC
The branch main has been updated by jwb:
URL: https://cgit.FreeBSD.org/ports/commit/?id=20a3f9548d28c7c664b736821e791327f2c1e777
commit 20a3f9548d28c7c664b736821e791327f2c1e777
Author: Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2026-10-08 13:28:30 +0000
Commit: Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2026-10-08 13:28:30 +0000
biology/htslib: Remove obsolete patches
Patches for aarch64 were erroneously restored due to a transient
build failure on my M1, which was misinterpreted.
---
biology/htslib/Makefile | 1 +
.../patch-htscodecs_htscodecs_rANS__static32x16pr__neon.c | 11 -----------
.../files/patch-htscodecs_htscodecs_rANS__static4x16pr.c | 11 -----------
3 files changed, 1 insertion(+), 22 deletions(-)
diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile
index e600db8cec64..8ddb1d2aace4 100644
--- a/biology/htslib/Makefile
+++ b/biology/htslib/Makefile
@@ -1,5 +1,6 @@
PORTNAME= htslib
DISTVERSION= 1.24
+PORTREVISION= 1
CATEGORIES= biology devel
# Github generated distfiles are incomplete, so use custom tarball
MASTER_SITES= https://github.com/samtools/htslib/releases/download/${DISTVERSION}/
diff --git a/biology/htslib/files/patch-htscodecs_htscodecs_rANS__static32x16pr__neon.c b/biology/htslib/files/patch-htscodecs_htscodecs_rANS__static32x16pr__neon.c
deleted file mode 100644
index 434edf03f411..000000000000
--- a/biology/htslib/files/patch-htscodecs_htscodecs_rANS__static32x16pr__neon.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- htscodecs/htscodecs/rANS_static32x16pr_neon.c.orig 2024-10-09 21:43:35 UTC
-+++ htscodecs/htscodecs/rANS_static32x16pr_neon.c
-@@ -32,7 +32,7 @@
- */
-
- #include "config.h"
--#if defined(__ARM_NEON) && defined(__aarch64__)
-+#if defined(__ARM_NEON)
- #include <arm_neon.h>
-
- #include <limits.h>
diff --git a/biology/htslib/files/patch-htscodecs_htscodecs_rANS__static4x16pr.c b/biology/htslib/files/patch-htscodecs_htscodecs_rANS__static4x16pr.c
deleted file mode 100644
index 3eaebe7ae36d..000000000000
--- a/biology/htslib/files/patch-htscodecs_htscodecs_rANS__static4x16pr.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- htscodecs/htscodecs/rANS_static4x16pr.c.orig 2024-10-09 21:44:38 UTC
-+++ htscodecs/htscodecs/rANS_static4x16pr.c
-@@ -1030,7 +1030,7 @@ unsigned char *(*rans_dec_func(int do_simd, int order)
- }
- }
-
--#elif defined(__ARM_NEON) && defined(__aarch64__)
-+#elif defined(__ARM_NEON)
-
- #if defined(__linux__) || defined(__FreeBSD__)
- #include <sys/auxv.h>