git: 0d69b76f0fd1 - main - biology/samtools: Update to 1.23.1
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Date: Sun, 29 Mar 2026 13:25:36 UTC
The branch main has been updated by jwb:
URL: https://cgit.FreeBSD.org/ports/commit/?id=0d69b76f0fd1da45410da20f632ec16b7e71fb7d
commit 0d69b76f0fd1da45410da20f632ec16b7e71fb7d
Author: Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2026-03-29 13:24:50 +0000
Commit: Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2026-03-29 13:25:32 +0000
biology/samtools: Update to 1.23.1
Several bug fixes and code improvements
Changes: https://github.com/samtools/samtools/releases
---
biology/samtools/Makefile | 4 +++-
biology/samtools/distinfo | 6 +++---
2 files changed, 6 insertions(+), 4 deletions(-)
diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile
index f0ce1807eecd..8b38c60021ae 100644
--- a/biology/samtools/Makefile
+++ b/biology/samtools/Makefile
@@ -1,5 +1,5 @@
PORTNAME= samtools
-DISTVERSION= 1.22
+DISTVERSION= 1.23.1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@@ -22,6 +22,8 @@ GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
SHEBANG_FILES= misc/*.pl misc/plot-bamstats test/test.pl
+CONFIGURE_ARGS= --with-htslib=system
+
TEST_TARGET= test
.include <bsd.port.mk>
diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo
index 69760896c894..2b86f5f2668a 100644
--- a/biology/samtools/distinfo
+++ b/biology/samtools/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1748951307
-SHA256 (samtools-samtools-1.22_GH0.tar.gz) = dbe62a97d19634a930033ce302b340a5109263efc371b83481182385a98bcdda
-SIZE (samtools-samtools-1.22_GH0.tar.gz) = 5742299
+TIMESTAMP = 1774784873
+SHA256 (samtools-samtools-1.23.1_GH0.tar.gz) = 61314c16f6b502998f79c8d5d3d92f0ab1aab1ca23d60b8abae74e53a4119c87
+SIZE (samtools-samtools-1.23.1_GH0.tar.gz) = 5758667