git: 726185a559aa - main - biology/htslib: Update to 1.23.1
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Date: Sun, 29 Mar 2026 13:25:34 UTC
The branch main has been updated by jwb:
URL: https://cgit.FreeBSD.org/ports/commit/?id=726185a559aaec87362802379d51ad9bb8998714
commit 726185a559aaec87362802379d51ad9bb8998714
Author: Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2026-03-29 13:08:18 +0000
Commit: Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2026-03-29 13:25:32 +0000
biology/htslib: Update to 1.23.1
Numerous bug fixes
Changes: https://github.com/samtools/htslib/releases
Added PLUGINS option to build with external plugins enabled
---
biology/htslib/Makefile | 8 +++++---
biology/htslib/distinfo | 6 +++---
2 files changed, 8 insertions(+), 6 deletions(-)
diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile
index 5b3c5908f428..aa4f02a37d15 100644
--- a/biology/htslib/Makefile
+++ b/biology/htslib/Makefile
@@ -1,5 +1,5 @@
PORTNAME= htslib
-DISTVERSION= 1.22
+DISTVERSION= 1.23.1
CATEGORIES= biology devel
# Github generated distfiles are incomplete, so use custom tarball
MASTER_SITES= https://github.com/samtools/htslib/releases/download/${DISTVERSION}/
@@ -27,13 +27,15 @@ MAKE_ARGS= ${MAKE_ARGS_${ARCH}}
PATHFIX_MAKEFILEIN= Makefile
SHEBANG_FILES= test/*.pl
-OPTIONS_DEFINE= CURL
-OPTIONS_DEFAULT= CURL
+OPTIONS_DEFINE= CURL PLUGINS
+OPTIONS_DEFAULT= CURL PLUGINS
CURL_DESC= Use libcurl for network file access (HTTPS and S3 support).
CURL_USES= ssl
CURL_LIB_DEPENDS= libcurl.so:ftp/curl
CURL_CONFIGURE_ENABLE= libcurl
+PLUGIN_DESC= Enable external plugins for exotic file access, etc.
+PLUGIN_CONFIGURE_ON= plugins
PLIST_SUB= PORTVERSION="${PORTVERSION}"
diff --git a/biology/htslib/distinfo b/biology/htslib/distinfo
index fbe2d5f9d13e..257fe618a524 100644
--- a/biology/htslib/distinfo
+++ b/biology/htslib/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1748951113
-SHA256 (htslib-1.22.tar.bz2) = 6250c1df297db477516e60ac8df45ed75a652d1f25b0f37f12f5b17269eafde9
-SIZE (htslib-1.22.tar.bz2) = 4830206
+TIMESTAMP = 1774783712
+SHA256 (htslib-1.23.1.tar.bz2) = f8a3f36effeec38f043c53ab1f2d9ed45064f14205c5ef8e3c815763b90803c4
+SIZE (htslib-1.23.1.tar.bz2) = 4987046