git: faadb5898d64 - main - biology/salmon: Unbreak: Relax libgff version requirement
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Date: Tue, 10 Mar 2026 23:04:43 UTC
The branch main has been updated by jwb:
URL: https://cgit.FreeBSD.org/ports/commit/?id=faadb5898d6485975074edef381765678edd700f
commit faadb5898d6485975074edef381765678edd700f
Author: Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2026-03-10 23:03:35 +0000
Commit: Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2026-03-10 23:03:35 +0000
biology/salmon: Unbreak: Relax libgff version requirement
Also drop unnecessary libboost dep
Reported by: pkg-fallout
---
biology/salmon/Makefile | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/biology/salmon/Makefile b/biology/salmon/Makefile
index 7097ee7a77df..c4f91d79f8d1 100644
--- a/biology/salmon/Makefile
+++ b/biology/salmon/Makefile
@@ -1,7 +1,7 @@
PORTNAME= salmon
DISTVERSIONPREFIX= v
DISTVERSION= 1.10.3
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@@ -17,15 +17,14 @@ NOT_FOR_ARCHS_REASON= Requires 64-bit processor
# libtool and auto* are run manually in submodules, so don't put them in USES
BUILD_DEPENDS= bash:shells/bash \
cereal>=1.3.0:devel/cereal \
- libgff==2.0.0:biology/libgff \
+ libgff>=2.0.0:biology/libgff \
libtool:devel/libtool \
autoreconf:devel/autoconf \
aclocal:devel/automake \
eigen>0:math/eigen3 \
libdivide>0:math/libdivide \
curl>0:ftp/curl
-LIB_DEPENDS= libtbb.so:devel/onetbb \
- libboost_thread.so:devel/boost-libs
+LIB_DEPENDS= libtbb.so:devel/onetbb
USES= cmake:noninja gmake localbase shebangfix
USE_GITHUB= yes
@@ -46,6 +45,7 @@ CMAKE_ARGS+= -DHAVE_FAST_MALLOC:BOOL=on \
-DFETCHED_PUFFERFISH:BOOL=on \
-DFETCHED_LIBGFF:BOOL=on \
-DFETCH_STADEN:BOOL=true
+WITH_DEBUG= yes
CXXFLAGS+= -I${LOCALBASE}/include/eigen3
LDFLAGS+= -lpthread