git: cee5cd0c67a1 - main - science/py-pynwb: New port: Package for working with Neurodata stored in the NWB format

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=cee5cd0c67a1fdde11069538051857dc30607c46

commit cee5cd0c67a1fdde11069538051857dc30607c46
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2026-06-27 19:14:19 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2026-06-27 19:47:18 +0000

    science/py-pynwb: New port: Package for working with Neurodata stored in the NWB format
---
 science/Makefile           |  1 +
 science/py-pynwb/Makefile  | 42 ++++++++++++++++++++++++++++++++++++++++++
 science/py-pynwb/distinfo  |  3 +++
 science/py-pynwb/pkg-descr |  3 +++
 4 files changed, 49 insertions(+)

diff --git a/science/Makefile b/science/Makefile
index fabb50f9596a..cef8c75f5513 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -426,6 +426,7 @@
     SUBDIR += py-pymbd
     SUBDIR += py-pymol
     SUBDIR += py-pynrrd
+    SUBDIR += py-pynwb
     SUBDIR += py-pyosf
     SUBDIR += py-pyphot
     SUBDIR += py-pyprecice
diff --git a/science/py-pynwb/Makefile b/science/py-pynwb/Makefile
new file mode 100644
index 000000000000..d3a81934bbdf
--- /dev/null
+++ b/science/py-pynwb/Makefile
@@ -0,0 +1,42 @@
+PORTNAME=	pynwb
+DISTVERSION=	3.1.3
+CATEGORIES=	science python
+MASTER_SITES=	PYPI
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	Package for working with Neurodata stored in the NWB format
+WWW=		https://github.com/NeurodataWithoutBorders/pynwb
+
+LICENSE=	BSD3CLAUSE
+LICENSE_FILE=	${WRKSRC}/license.txt
+
+BUILD_DEPENDS=	${PYTHON_PKGNAMEPREFIX}hatch-vcs>=0:devel/py-hatch-vcs@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}hatchling>=0:devel/py-hatchling@${PY_FLAVOR}
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}h5py>=3.2.0:science/py-h5py@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}hdmf>=4.1.2:science/py-hdmf@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}numpy>=1.24.0,1:math/py-numpy@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}pandas>=1.2.0:math/py-pandas@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}platformdirs>=4.1.0:devel/py-platformdirs@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}python-dateutil>=2.8.2:devel/py-python-dateutil@${PY_FLAVOR}
+TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}pytest-cov>=0:devel/py-pytest-cov@${PY_FLAVOR}
+
+USES=		python
+USE_PYTHON=	pep517 concurrent autoplist concurrent pytest
+
+TEST_ENV=	${MAKE_ENV} PATH=${STAGEDIR}${PREFIX}/bin:${PATH} \
+		PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
+TEST_ARGS=	-o "testpaths=tests"
+PYTEST_BROKEN_TESTS=	create_test_extension \
+			test_custom_target_table \
+			test_get_class \
+			test_load_namespace_with_reftype_attribute_check_autoclass_const
+
+NO_ARCH=	yes
+
+post-extract:
+	@${RM} -r ${WRKSRC}/tests/read_dandi
+
+# tests as of 3.1.3: 729 passed, 11 skipped, 4 deselected in 73.65s
+
+.include <bsd.port.mk>
diff --git a/science/py-pynwb/distinfo b/science/py-pynwb/distinfo
new file mode 100644
index 000000000000..0d0a8d5442a4
--- /dev/null
+++ b/science/py-pynwb/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1751400000
+SHA256 (pynwb-3.1.3.tar.gz) = ee75219aa241b72b10d1c6830ae6bafa7e3e44f0429715c2ef0920a19654e185
+SIZE (pynwb-3.1.3.tar.gz) = 35784649
diff --git a/science/py-pynwb/pkg-descr b/science/py-pynwb/pkg-descr
new file mode 100644
index 000000000000..e628b26fd675
--- /dev/null
+++ b/science/py-pynwb/pkg-descr
@@ -0,0 +1,3 @@
+PyNWB is a Python package for working with NWB (Neurodata Without Borders)
+data. It provides a high-level API for efficiently working with
+neurophysiology data stored in the NWB format.