git: 2418ca468a39 - main - devel/py-anndata: Update to 0.12.9

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From: Po-Chuan Hsieh <sunpoet_at_FreeBSD.org>
Date: Tue, 03 Feb 2026 05:17:46 UTC
The branch main has been updated by sunpoet:

URL: https://cgit.FreeBSD.org/ports/commit/?id=2418ca468a39627add108579aa1cd306b75869ce

commit 2418ca468a39627add108579aa1cd306b75869ce
Author:     Po-Chuan Hsieh <sunpoet@FreeBSD.org>
AuthorDate: 2026-02-03 04:43:52 +0000
Commit:     Po-Chuan Hsieh <sunpoet@FreeBSD.org>
CommitDate: 2026-02-03 05:09:25 +0000

    devel/py-anndata: Update to 0.12.9
    
    Changes:        https://github.com/scverse/anndata/tree/main/docs/release-notes
                    https://anndata.readthedocs.io/en/latest/release-notes/
---
 devel/py-anndata/Makefile                   | 3 ++-
 devel/py-anndata/distinfo                   | 6 +++---
 devel/py-anndata/files/patch-pyproject.toml | 6 +++---
 3 files changed, 8 insertions(+), 7 deletions(-)

diff --git a/devel/py-anndata/Makefile b/devel/py-anndata/Makefile
index 17f1e4b072b6..ef8228f7cf1e 100644
--- a/devel/py-anndata/Makefile
+++ b/devel/py-anndata/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	anndata
-PORTVERSION=	0.12.7
+PORTVERSION=	0.12.9
 CATEGORIES=	devel python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -21,6 +21,7 @@ RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}array-api-compat>=1.7.1:devel/py-array-api-c
 		${PYTHON_PKGNAMEPREFIX}numpy>=1.26,1:math/py-numpy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}packaging>=24.2:devel/py-packaging@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pandas>=2.1.0,1<3,1:math/py-pandas@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}pooch>=0:devel/py-pooch@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scipy>=1.11:science/py-scipy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}zarr>=2.18.4:devel/py-zarr@${PY_FLAVOR}
 
diff --git a/devel/py-anndata/distinfo b/devel/py-anndata/distinfo
index fc94296a5cea..cc6f4b8fb456 100644
--- a/devel/py-anndata/distinfo
+++ b/devel/py-anndata/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1766953352
-SHA256 (anndata-0.12.7.tar.gz) = 10612d476e78570be2fdd391b09cb64d3b33cda32b1b46a0a4b999ba98d64d47
-SIZE (anndata-0.12.7.tar.gz) = 2248853
+TIMESTAMP = 1769874272
+SHA256 (anndata-0.12.9.tar.gz) = 50c89ac662d37b974dd61115b729e543cbe8c1f4358b4e4361763b8a08c724eb
+SIZE (anndata-0.12.9.tar.gz) = 2253867
diff --git a/devel/py-anndata/files/patch-pyproject.toml b/devel/py-anndata/files/patch-pyproject.toml
index 61ec806f6d72..e2344e7e0f56 100644
--- a/devel/py-anndata/files/patch-pyproject.toml
+++ b/devel/py-anndata/files/patch-pyproject.toml
@@ -1,10 +1,10 @@
 --- pyproject.toml.orig	2020-02-02 00:00:00 UTC
 +++ pyproject.toml
-@@ -39,13 +39,13 @@ dependencies = [
-     "pandas >=2.1.0, !=2.1.2",
+@@ -40,13 +40,13 @@ dependencies = [
+     "pandas >=2.1.0, !=2.1.2, <3",
      "numpy>=1.26",
      # https://github.com/scverse/anndata/issues/1434
--    "scipy >=1.12",
+-    "scipy >=1.12,!=1.17.0",
 +    "scipy >=1.11",
      "h5py>=3.8",
      "natsort",