git: e46886b91d23 - main - biology/cufflinks: fix build with Boost-1.89 (+)

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From: Dima Panov <fluffy_at_FreeBSD.org>
Date: Wed, 22 Oct 2025 00:04:33 UTC

The branch main has been updated by fluffy:

URL: https://cgit.FreeBSD.org/ports/commit/?id=e46886b91d230c98e1f11b4f2e839b57956c0e09

commit e46886b91d230c98e1f11b4f2e839b57956c0e09
Author:     Dima Panov <fluffy@FreeBSD.org>
AuthorDate: 2025-10-21 23:44:10 +0000
Commit:     Dima Panov <fluffy@FreeBSD.org>
CommitDate: 2025-10-22 00:04:20 +0000

    biology/cufflinks: fix build with Boost-1.89 (+)
    
    Reported by:    fallout
---
 biology/cufflinks/Makefile | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/biology/cufflinks/Makefile b/biology/cufflinks/Makefile
index 7d55c85df246..0527e32016e1 100644
--- a/biology/cufflinks/Makefile
+++ b/biology/cufflinks/Makefile
@@ -44,5 +44,7 @@ PLIST_FILES=	bin/compress_gtf \
 
 post-patch: # https://github.com/cole-trapnell-lab/cufflinks/issues/116
 	@${GREP} -rl 'fabs(' ${WRKSRC} | ${GREP} "\.cpp$$" | ${XARGS} ${REINPLACE_CMD} 's|std::fabs(|fabs(| ; s|fabs(|::fabs(|'
+	@${REINPLACE_CMD} -e '/boost_system/d'  -e '/AX_BOOST_SYSTEM/d' \
+		${WRKSRC}/configure.ac
 
 .include <bsd.port.mk>