git: a523863f0b86 - main - biology/spoa: update 4.1.0 → 4.1.5

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=a523863f0b866b033113cfc260e4ce293b5ac559

commit a523863f0b866b033113cfc260e4ce293b5ac559
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2025-11-05 03:49:52 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2025-11-05 06:57:34 +0000

    biology/spoa: update 4.1.0 → 4.1.5
---
 biology/spoa/Makefile                   |  7 +++++--
 biology/spoa/distinfo                   |  6 +++---
 biology/spoa/files/patch-CMakeLists.txt | 16 ++++++++++++++++
 3 files changed, 24 insertions(+), 5 deletions(-)

diff --git a/biology/spoa/Makefile b/biology/spoa/Makefile
index 6ad5d248bb8e..690c3e784a6f 100644
--- a/biology/spoa/Makefile
+++ b/biology/spoa/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	spoa
-DISTVERSION=	4.1.0
+DISTVERSION=	4.1.5
 CATEGORIES=	biology
 
 MAINTAINER=	yuri@FreeBSD.org
@@ -27,7 +27,6 @@ GH_ACCOUNT=	rvaser
 
 CMAKE_ON=	BUILD_SHARED_LIBS \
 		spoa_build_exe \
-		spoa_optimize_for_portability \
 		spoa_build_executable \
 		spoa_use_simde \
 		spoa_use_simde_nonvec \
@@ -52,4 +51,8 @@ do-test:
 		${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \
 		${BUILD_WRKSRC}/bin/${PORTNAME}_test
 
+tests as of 4.1.5:
+# [==========] 23 tests from 2 test suites ran. (671 ms total)
+# [  PASSED  ] 23 tests.
+
 .include <bsd.port.mk>
diff --git a/biology/spoa/distinfo b/biology/spoa/distinfo
index 09296c5fd3cf..7b72220d5b9a 100644
--- a/biology/spoa/distinfo
+++ b/biology/spoa/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1693289273
-SHA256 (rvaser-spoa-4.1.0_GH0.tar.gz) = 43238356f00bce2ad9698fc18b3e320024172a82182dcff24d57c5cf19e342c8
-SIZE (rvaser-spoa-4.1.0_GH0.tar.gz) = 47814
+TIMESTAMP = 1762314066
+SHA256 (rvaser-spoa-4.1.5_GH0.tar.gz) = b5d323740b01255c55725e88db2548c666a05bc83b825c19cfac10586e21e7b3
+SIZE (rvaser-spoa-4.1.5_GH0.tar.gz) = 47513
diff --git a/biology/spoa/files/patch-CMakeLists.txt b/biology/spoa/files/patch-CMakeLists.txt
new file mode 100644
index 000000000000..44119c89566a
--- /dev/null
+++ b/biology/spoa/files/patch-CMakeLists.txt
@@ -0,0 +1,16 @@
+--- CMakeLists.txt.orig	2025-11-05 03:44:04 UTC
++++ CMakeLists.txt
+@@ -32,13 +32,6 @@ option(spoa_generate_dispatch "Use SIMDe to generate x
+ option(spoa_use_simde_openmp "Use SIMDe support for OpenMP SIMD" OFF)
+ option(spoa_generate_dispatch "Use SIMDe to generate x86 dispatch" OFF)
+ 
+-if (NOT spoa_generate_dispatch)
+-  if (spoa_optimize_for_portability)
+-    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -msse4.1")
+-  elseif (spoa_optimize_for_native)
+-    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -march=native")
+-  endif ()
+-endif ()
+ if (spoa_use_simde OR
+     spoa_use_simde_nonvec OR
+     spoa_use_simde_openmp OR