git: bba37490f132 - main - biology/bifrost: Remove USE_GCC, fix build with clang19

The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=bba37490f1326822c46451866430c78075a48028

commit bba37490f1326822c46451866430c78075a48028
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2025-05-27 14:06:00 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2025-05-27 14:08:27 +0000

    biology/bifrost: Remove USE_GCC, fix build with clang19
    
    Fix apparent typo in seldom-used code (hayzam@alchemilla.io)
    
    Reported by:    gerald
    Tested by:      jwb
---
 biology/bifrost/Makefile                        | 12 ++----------
 biology/bifrost/distinfo                        |  2 +-
 biology/bifrost/files/patch-src_DataStorage.tcc | 14 ++++++++++++++
 3 files changed, 17 insertions(+), 11 deletions(-)

diff --git a/biology/bifrost/Makefile b/biology/bifrost/Makefile
index 082d27df32e6..e1873b430549 100644
--- a/biology/bifrost/Makefile
+++ b/biology/bifrost/Makefile
@@ -1,6 +1,7 @@
 PORTNAME=	bifrost
 DISTVERSIONPREFIX=	v
 DISTVERSION=	1.3.5
+PORTREVISION=	1
 CATEGORIES=	biology
 
 MAINTAINER=	jwb@FreeBSD.org
@@ -22,13 +23,4 @@ CXXFLAGS+=	-Wno-unqualified-std-cast-call
 
 GH_ACCOUNT=	pmelsted
 
-.include <bsd.port.pre.mk>
-
-# Build fails with clang19, but succeeds with gcc13
-# Have not figured out where this sz_link member is even supposed to come from
-# DataStorage.tcc:81:69: error: no member named 'sz_link' in 'DataStorage<Unitig_data_t>'
-.if ${OSVERSION} > 1500000
-USE_GCC=	yes
-.endif
-
-.include <bsd.port.post.mk>
+.include <bsd.port.mk>
diff --git a/biology/bifrost/distinfo b/biology/bifrost/distinfo
index 49f7e2d919bb..43195678b9c9 100644
--- a/biology/bifrost/distinfo
+++ b/biology/bifrost/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1710590640
+TIMESTAMP = 1748282354
 SHA256 (pmelsted-bifrost-v1.3.5_GH0.tar.gz) = e1b2491328b0cc1a32e433a8a9780f05547fa4b8d674b58abdda9ac8809f5341
 SIZE (pmelsted-bifrost-v1.3.5_GH0.tar.gz) = 356701
diff --git a/biology/bifrost/files/patch-src_DataStorage.tcc b/biology/bifrost/files/patch-src_DataStorage.tcc
new file mode 100644
index 000000000000..22196bb8e11c
--- /dev/null
+++ b/biology/bifrost/files/patch-src_DataStorage.tcc
@@ -0,0 +1,14 @@
+--- src/DataStorage.tcc.orig	2024-03-15 15:20:17 UTC
++++ src/DataStorage.tcc
+@@ -78,7 +78,10 @@ DataStorage<U>::DataStorage(const DataStorage& o) : co
+ 
+         unitig_cs_link = new atomic<uint64_t>[sz_link];
+ 
+-        for (size_t i = 0; i != sz_link; ++i) unitig_cs_link[i] = o.sz_link[i].load();
++	// Hayzam Sherif: o.sz_link -> o.unitig_cs_link
++	// Independently proposed by Lucas van Dijk:
++	// https://github.com/pmelsted/bifrost/pull/18/files
++        for (size_t i = 0; i != sz_link; ++i) unitig_cs_link[i] = o.unitig_cs_link[i].load();
+     }
+ 
+     if ((o.data != nullptr) && (o.sz_cs != 0)){