git: 71f86ac3cabb - main - science/afni: update to 25.0.09

The branch main has been updated by fernape:

URL: https://cgit.FreeBSD.org/ports/commit/?id=71f86ac3cabb460c5c1bd380e0ad27c13379de73

commit 71f86ac3cabb460c5c1bd380e0ad27c13379de73
Author:     Fernando Apesteguía <fernape@FreeBSD.org>
AuthorDate: 2025-03-14 08:43:47 +0000
Commit:     Fernando Apesteguía <fernape@FreeBSD.org>
CommitDate: 2025-03-19 21:49:53 +0000

    science/afni: update to 25.0.09
---
 science/afni/Makefile                               |  2 +-
 science/afni/distinfo                               |  6 +++---
 .../files/patch-crorden_dcm2niix__console_makefile  | 21 +++++++++++++--------
 science/afni/pkg-plist                              |  3 +++
 4 files changed, 20 insertions(+), 12 deletions(-)

diff --git a/science/afni/Makefile b/science/afni/Makefile
index d49627230f51..539b15064cb2 100644
--- a/science/afni/Makefile
+++ b/science/afni/Makefile
@@ -1,6 +1,6 @@
 PORTNAME=		afni
 DISTVERSIONPREFIX=	AFNI_
-DISTVERSION=		25.0.07
+DISTVERSION=		25.0.09
 CATEGORIES=		science biology graphics perl5 python
 
 MAINTAINER=	fernape@FreeBSD.org
diff --git a/science/afni/distinfo b/science/afni/distinfo
index 7b99174ab817..e1acea3933d8 100644
--- a/science/afni/distinfo
+++ b/science/afni/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1740554679
-SHA256 (afni-afni-AFNI_25.0.07_GH0.tar.gz) = 592b634f1d9bbd94fce4bdda35328427fbf10de508e7bd82c3b034b6a32346c7
-SIZE (afni-afni-AFNI_25.0.07_GH0.tar.gz) = 53235349
+TIMESTAMP = 1742370090
+SHA256 (afni-afni-AFNI_25.0.09_GH0.tar.gz) = f6b5b94557ae91b59492209d5e17b26164cf63b559e13c79c344d430656c48ea
+SIZE (afni-afni-AFNI_25.0.09_GH0.tar.gz) = 53264676
diff --git a/science/afni/files/patch-crorden_dcm2niix__console_makefile b/science/afni/files/patch-crorden_dcm2niix__console_makefile
index ad2ce657740c..5bba96585b68 100644
--- a/science/afni/files/patch-crorden_dcm2niix__console_makefile
+++ b/science/afni/files/patch-crorden_dcm2niix__console_makefile
@@ -1,24 +1,29 @@
---- crorden/dcm2niix_console/makefile.orig	2024-02-29 01:05:45 UTC
+--- crorden/dcm2niix_console/makefile.orig	2025-03-12 22:08:30 UTC
 +++ crorden/dcm2niix_console/makefile
 @@ -1,5 +1,5 @@
  # Regular use
 -CFLAGS=-s -O3
 +CXXFLAGS=-s -O3
  
- # Debugging
- #CFLAGS=-g
-@@ -34,7 +34,7 @@ ifneq ($(OS),Windows_NT)
+ # Common files used for everything
+ CFILES=main_console.cpp nii_foreign.cpp nii_dicom.cpp jpg_0XC3.cpp ujpeg.cpp nifti1_io_core.cpp nii_ortho.cpp nii_dicom_batch.cpp -o dcm2niix
+@@ -37,9 +37,9 @@ ifneq ($(OS),Windows_NT)
+ 	OS = $(shell uname)
+  	ifeq "$(OS)" "Darwin"
  		#CFLAGS=-dead_strip -O3
- 		# ponder -sectcreate later [rickr]
- 		# CFLAGS=-O3 -sectcreate __TEXT __info_plist Info.plist
 -		CFLAGS= -O3
+ 		# ponder -sectcreate later [rickr]
+ 		#CFLAGS=-O3 -sectcreate __TEXT __info_plist Info.plist
 +		CXXFLAGS= -O3
  		#Apple notarization requires a Info.plist
  		# For .app bundles, the Info.plist is a separate file, for executables it is appended as a section
  		#you can check that the Info.plist section has been inserted with either of these commands
-@@ -45,4 +45,4 @@ all:
+@@ -51,7 +51,7 @@ all:
  	endif
  endif
  all:
--	g++ $(CFLAGS) -I. $(JSFLAGS) $(JFLAGS) $(LFLAGS) main_console.cpp nii_foreign.cpp nii_dicom.cpp jpg_0XC3.cpp ujpeg.cpp nifti1_io_core.cpp nii_ortho.cpp nii_dicom_batch.cpp -o dcm2niix -DmyDisableOpenJPEG
+-	g++ $(CFLAGS) -I. $(JSFLAGS) $(JFLAGS) $(LFLAGS) $(UFILES)
 +	$(CXX) $(CXXFLAGS) -I. $(JFLAGS) main_console.cpp nii_foreign.cpp nii_dicom.cpp jpg_0XC3.cpp ujpeg.cpp nifti1_io_core.cpp nii_ortho.cpp nii_dicom_batch.cpp  -o dcm2niix -DmyDisableOpenJPEG
+ 
+ sanitize:
+ 	g++ -O1 -g -fsanitize=address -fno-omit-frame-pointer $(LFLAGS) $(UFILES)
diff --git a/science/afni/pkg-plist b/science/afni/pkg-plist
index 073e9561307a..bddc9f2c8c8d 100644
--- a/science/afni/pkg-plist
+++ b/science/afni/pkg-plist
@@ -500,6 +500,7 @@ bin/adjunct_apqc_tsnr_general
 bin/adjunct_atlas_points_to_labeltable
 bin/adjunct_aw_tableize_roi_info.py
 bin/adjunct_calc_mont_dims.py
+bin/adjunct_cbar_out
 bin/adjunct_combine_str.py
 bin/adjunct_deob_around_origin
 bin/adjunct_is_label.py
@@ -546,6 +547,7 @@ bin/build_afni.py
 bin/byteorder
 bin/cat_matvec
 bin/ccalc
+bin/chauffeur_map_rois
 bin/cifti_tool
 bin/colorbar_tool.py
 bin/column_cat
@@ -668,6 +670,7 @@ bin/slow_surf_clustsim.py
 bin/smooth.R
 bin/sswarper2
 bin/stimband
+bin/stouffer
 bin/strblast
 bin/suma
 bin/suma_change_spec