git: 723e906a7e06 - main - math/vtk9: update 9.2.6 → 9.5.0
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Date: Fri, 27 Jun 2025 17:00:44 UTC
The branch main has been updated by yuri:
URL: https://cgit.FreeBSD.org/ports/commit/?id=723e906a7e060a80252ece63d7de6d1152c70313
commit 723e906a7e060a80252ece63d7de6d1152c70313
Author: Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2025-06-27 14:49:19 +0000
Commit: Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2025-06-27 17:00:41 +0000
math/vtk9: update 9.2.6 → 9.5.0
---
cad/appcsxcad/Makefile | 1 +
cad/csxcad/Makefile | 2 +-
cad/freecad/Makefile | 7 +-
cad/opencascade/Makefile | 1 +
cad/opencascade/files/patch-CMakeLists.txt | 13 ++-
cad/qcsxcad/Makefile | 1 +
devel/gdcm/Makefile | 1 +
graphics/cloudcompare/Makefile | 2 +-
graphics/f3d/Makefile | 2 +-
graphics/f3d/pkg-plist | 15 ----
graphics/mirtk/Makefile | 16 ++--
graphics/mirtk/distinfo | 6 +-
graphics/opencv/Makefile | 2 +-
graphics/pcl-pointclouds/Makefile | 2 +-
graphics/py-fury/Makefile | 1 +
graphics/py-mayavi/Makefile | 2 +-
graphics/py-pyvista/Makefile | 2 +-
math/vtk9/Makefile | 3 +-
math/vtk9/Makefile.version | 2 +-
math/vtk9/distinfo | 6 +-
.../patch-ThirdParty_cgns_vtkcgns_src_adfh_ADFH.c | 13 ---
...Party_diy2_vtkdiy2_include_vtkdiy2_fmt_format.h | 18 ----
...dParty_exodusII_vtkexodusII_src_ex__put__prop.c | 14 ----
...exodusII_vtkexodusII_src_ex__put__prop__names.c | 14 ----
.../files/patch-ThirdParty_glew_vtkglew_src_glew.c | 10 ---
.../patch-ThirdParty_glew_vtkglew_src_glewinfo.c | 10 ---
.../patch-Utilities_octree_octree_octree__node.txx | 11 ---
misc/visp/Makefile | 10 ++-
misc/visp/files/patch-CMakeLists.txt | 13 ++-
science/InsightToolkit/Makefile | 2 +-
science/InsightToolkit/Makefile.remote_modules | 2 +-
science/InsightToolkit/pkg-plist | 96 ----------------------
science/avogadrolibs/Makefile | 1 +
science/elmerfem/Makefile | 2 +
science/lammps/Makefile | 2 +-
science/liggghts/Makefile | 2 +-
science/mmg/Makefile | 1 +
science/openems/Makefile | 2 +-
science/paraview/Makefile | 2 +-
science/py-vedo/Makefile | 1 +
40 files changed, 74 insertions(+), 239 deletions(-)
diff --git a/cad/appcsxcad/Makefile b/cad/appcsxcad/Makefile
index a2ffaded6ade..96087df80292 100644
--- a/cad/appcsxcad/Makefile
+++ b/cad/appcsxcad/Makefile
@@ -1,6 +1,7 @@
PORTNAME= appcsxcad
DISTVERSIONPREFIX= v
DISTVERSION= 0.2.3
+PORTREVISION= 1
CATEGORIES= cad
MAINTAINER= yuri@FreeBSD.org
diff --git a/cad/csxcad/Makefile b/cad/csxcad/Makefile
index 525452bcaec8..618b05eea58e 100644
--- a/cad/csxcad/Makefile
+++ b/cad/csxcad/Makefile
@@ -1,7 +1,7 @@
PORTNAME= csxcad
DISTVERSIONPREFIX= v
DISTVERSION= 0.6.3
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= cad
MAINTAINER= yuri@FreeBSD.org
diff --git a/cad/freecad/Makefile b/cad/freecad/Makefile
index 0ba67b1b1140..905a09a5391f 100644
--- a/cad/freecad/Makefile
+++ b/cad/freecad/Makefile
@@ -1,6 +1,6 @@
PORTNAME= FreeCAD
DISTVERSION= 1.0.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= cad
MAINTAINER= cmt@FreeBSD.org
@@ -61,8 +61,6 @@ USE_LDCONFIG= yes
CPE_VENDOR= freecad_project
-VTK_VER= 9.2
-
DOS2UNIX_GLOB= *.txt *.h *.cpp *.py *.qss *.csv *.pov *.stp *.ui *.wrl *.WRL
SHEBANG_FILES= src/Tools/freecad-thumbnailer
@@ -103,6 +101,8 @@ CMAKE_ARGS+= -DOCC_INCLUDE_DIR="${LOCALBASE}/include/OpenCASCADE" \
CMAKE_INSTALL_PREFIX= ${PREFIX}/${PORTNAME}
+CXXFLAGS+= -DGetCellLinks=GetLinks # fix for vtk-9.5.0: equivalent of this patch: https://github.com/FreeCAD/FreeCAD/issues/21731#issuecomment-2934487147
+
OPTIONS_DEFINE= COLLADA
COLLADA_DESC= Install pycollada for Collada files import
@@ -132,4 +132,5 @@ post-install:
${INSTALL_SCRIPT} ${WRKSRC}/src/Tools/freecad-thumbnailer \
${STAGEDIR}${PREFIX}/bin/freecad-thumbnailer
+.include <../../math/vtk9/Makefile.version>
.include <bsd.port.mk>
diff --git a/cad/opencascade/Makefile b/cad/opencascade/Makefile
index 9a27fcdf5ddd..e80ff5dfbf56 100644
--- a/cad/opencascade/Makefile
+++ b/cad/opencascade/Makefile
@@ -1,6 +1,7 @@
PORTNAME= opencascade
DISTVERSIONPREFIX= V
DISTVERSION= 7_9_1
+PORTREVISION= 1
CATEGORIES= cad science
DIST_SUBDIR= ${PORTNAME}-${DISTVERSION}
diff --git a/cad/opencascade/files/patch-CMakeLists.txt b/cad/opencascade/files/patch-CMakeLists.txt
index 3050b6fa3785..cb9a2eaeb89c 100644
--- a/cad/opencascade/files/patch-CMakeLists.txt
+++ b/cad/opencascade/files/patch-CMakeLists.txt
@@ -1,6 +1,15 @@
--- CMakeLists.txt.orig 2025-05-20 11:17:10 UTC
+++ CMakeLists.txt
-@@ -1101,7 +1101,7 @@ endif()
+@@ -908,6 +908,8 @@ OCCT_INCLUDE_CMAKE_FILE ("adm/cmake/occt_defs_flags")
+ # include original list of definitions and flags
+ OCCT_INCLUDE_CMAKE_FILE ("adm/cmake/occt_defs_flags")
+
++include(adm/cmake/vtk.cmake) # workaround for https://gitlab.kitware.com/vtk/vtk/-/issues/19716
++
+ foreach (OCCT_3RDPARTY_LIST ${OCCT_3RDPARTY_CMAKE_LIST})
+ OCCT_INCLUDE_CMAKE_FILE (${OCCT_3RDPARTY_LIST})
+ endforeach()
+@@ -1101,7 +1103,7 @@ endif()
endif()
# validating custom.bat/sh for changes
@@ -9,7 +18,7 @@
file (READ "${INSTALL_DIR}/${INSTALL_DIR_SCRIPT}/custom.${SCRIPT_EXT}" CUSTOM_CONTENT)
string(FIND "${CUSTOM_CONTENT}" "${ADDITIONAL_CUSTOM_CONTENT}" pos)
if (pos EQUAL -1)
-@@ -1340,7 +1340,7 @@ install (CODE "string (TOLOWER \"\${CMAKE_INSTALL_CONF
+@@ -1340,7 +1342,7 @@ install (CODE "string (TOLOWER \"\${CMAKE_INSTALL_CONF
endforeach()
# install OpenCASCADE config file with compile definitions and C/C++ flags ONLY for current configuration
install (CODE "string (TOLOWER \"\${CMAKE_INSTALL_CONFIG_NAME}\" CMAKE_INSTALL_CONFIG_NAME_LOWER)")
diff --git a/cad/qcsxcad/Makefile b/cad/qcsxcad/Makefile
index 6a5e384ec7f4..0b75f90ab823 100644
--- a/cad/qcsxcad/Makefile
+++ b/cad/qcsxcad/Makefile
@@ -1,6 +1,7 @@
PORTNAME= qcsxcad
DISTVERSIONPREFIX= v
DISTVERSION= 0.6.3
+PORTREVISION= 1
CATEGORIES= cad
MAINTAINER= yuri@FreeBSD.org
diff --git a/devel/gdcm/Makefile b/devel/gdcm/Makefile
index c36d8bc91fe8..0a6b9ba12d2c 100644
--- a/devel/gdcm/Makefile
+++ b/devel/gdcm/Makefile
@@ -1,5 +1,6 @@
PORTNAME= gdcm
PORTVERSION= ${GDCM_MAJOR}.${GDCM_MINOR}.${GDCM_PATCH}
+PORTREVISION= 1
CATEGORIES= devel
MASTER_SITES= SF/gdcm/gdcm%20${GDCM_MAJOR}.x/GDCM%20${PORTVERSION}
diff --git a/graphics/cloudcompare/Makefile b/graphics/cloudcompare/Makefile
index c34a5bcce56a..70c41f6cd608 100644
--- a/graphics/cloudcompare/Makefile
+++ b/graphics/cloudcompare/Makefile
@@ -1,7 +1,7 @@
PORTNAME= cloudcompare
DISTVERSIONPREFIX= v
DISTVERSION= 2.12.4
-PORTREVISION= 16
+PORTREVISION= 17
CATEGORIES= graphics
MAINTAINER= ports@FreeBSD.org
diff --git a/graphics/f3d/Makefile b/graphics/f3d/Makefile
index 7f4c86116bb0..b5d60c73b92c 100644
--- a/graphics/f3d/Makefile
+++ b/graphics/f3d/Makefile
@@ -1,7 +1,7 @@
PORTNAME= f3d
DISTVERSIONPREFIX= v
DISTVERSION= 3.1.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= graphics
MAINTAINER= yuri@FreeBSD.org
diff --git a/graphics/f3d/pkg-plist b/graphics/f3d/pkg-plist
index 9d0032765f26..9a973dfddcf4 100644
--- a/graphics/f3d/pkg-plist
+++ b/graphics/f3d/pkg-plist
@@ -1,5 +1,4 @@
bin/f3d
-include/f3d/F3DUtils.h
include/f3d/camera.h
include/f3d/context.h
include/f3d/engine.h
@@ -14,10 +13,6 @@ include/f3d/reader.h
include/f3d/scene.h
include/f3d/types.h
include/f3d/utils.h
-include/f3d/vtkF3DFaceVaryingPointDispatcher.h
-include/f3d/vtkF3DGLTFImporter.h
-include/f3d/vtkF3DImporter.h
-include/f3d/vtkextModule.h
include/f3d/window.h
lib/cmake/f3d/application-config.cmake
lib/cmake/f3d/f3dConfig.cmake
@@ -28,20 +23,10 @@ lib/cmake/f3d/f3dLibraryTargets.cmake
lib/cmake/f3d/f3dTargets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/f3d/f3dTargets.cmake
lib/cmake/f3d/library-config.cmake
-lib/cmake/f3d_vtkext/f3d_vtkext-targets-%%CMAKE_BUILD_TYPE%%.cmake
-lib/cmake/f3d_vtkext/f3d_vtkext-targets.cmake
-lib/cmake/f3d_vtkext/f3d_vtkext-vtk-module-properties.cmake
lib/libf3d.so
lib/libf3d.so.3
lib/libf3d.so.3.1
lib/libvtkext.so
-%%ALEMBIC%%lib/libvtkextAlembic.a
-%%ASSIMP%%lib/libvtkextAssimp.a
-%%DRACO%%lib/libvtkextDraco.a
-lib/libvtkextNative.a
-%%OCCT%%lib/libvtkextOCCT.a
-lib/libvtkextPrivate.a
-lib/vtk/hierarchy/f3d_vtkext/vtkext-hierarchy.txt
%%ALEMBIC%%share/applications/f3d-plugin-alembic.desktop
%%ASSIMP%%share/applications/f3d-plugin-assimp.desktop
%%DRACO%%share/applications/f3d-plugin-draco.desktop
diff --git a/graphics/mirtk/Makefile b/graphics/mirtk/Makefile
index fb5967d48c4c..28b3fa763607 100644
--- a/graphics/mirtk/Makefile
+++ b/graphics/mirtk/Makefile
@@ -1,13 +1,14 @@
PORTNAME= mirtk
DISTVERSIONPREFIX= v
-DISTVERSION= 2.0.0-178
-PORTREVISION= 12
-DISTVERSIONSUFFIX= -g973ce2f
+DISTVERSION= 2.0.0-179
+PORTREVISION= 1
+DISTVERSIONSUFFIX= -gef71a17
CATEGORIES= graphics
MAINTAINER= yuri@FreeBSD.org
COMMENT= Medical Image Registration ToolKit (MIRTK)
-WWW= https://mirtk.github.io/
+WWW= https://mirtk.github.io/ \
+ https://github.com/BioMedIA/MIRTK
LICENSE= APACHE20
LICENSE_FILE= ${WRKSRC}/LICENSE.txt
@@ -17,13 +18,15 @@ BUILD_DEPENDS= boost-libs>0:devel/boost-libs \
LIB_DEPENDS= libpng16.so:graphics/png
USES= cmake compiler:c++11-lang eigen:3 perl5 python
+USE_CXXSTD= c++14
+USE_LDCONFIG= yes
+
USE_GITHUB= yes
GH_ACCOUNT= BioMedIA
GH_PROJECT= ${PORTNAME:tu}
-USE_LDCONFIG= yes
OPTIONS_DEFINE= TBB VTK
-OPTIONS_DEFAULT= TBB VTK
+OPTIONS_DEFAULT= TBB #VTK
TBB_DESC= Build with TBB
TBB_CMAKE_BOOL= WITH_TBB
@@ -33,6 +36,7 @@ VTK_DESC= Build with the VTK toolkit
VTK_CMAKE_BOOL= WITH_VTK
VTK_LIB_DEPENDS= libvtkCommonCore-${VTK_VER}.so:math/vtk${VTK_VER:R} \
libexpat.so:textproc/expat2
+VTK_BROKEN= causes compilation failure due to use of deprecated feature using std::bind1st, see https://github.com/BioMedIA/MIRTK/issues/789
.include <../../math/vtk9/Makefile.version>
.include <bsd.port.mk>
diff --git a/graphics/mirtk/distinfo b/graphics/mirtk/distinfo
index 063e17f809ef..8c77f474687e 100644
--- a/graphics/mirtk/distinfo
+++ b/graphics/mirtk/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1659025897
-SHA256 (BioMedIA-MIRTK-v2.0.0-178-g973ce2f_GH0.tar.gz) = 58e2f1ab1f9f161d63faa3a044bbe31dea315897d30a1b5754a3de83176765c0
-SIZE (BioMedIA-MIRTK-v2.0.0-178-g973ce2f_GH0.tar.gz) = 2905912
+TIMESTAMP = 1750917659
+SHA256 (BioMedIA-MIRTK-v2.0.0-179-gef71a17_GH0.tar.gz) = 7f95229472dda2979bcefbb80a37942817f28a845eb10fa75462405ff02df2dd
+SIZE (BioMedIA-MIRTK-v2.0.0-179-gef71a17_GH0.tar.gz) = 2905635
diff --git a/graphics/opencv/Makefile b/graphics/opencv/Makefile
index a3c6ed6b53cb..06523cbb8145 100644
--- a/graphics/opencv/Makefile
+++ b/graphics/opencv/Makefile
@@ -1,6 +1,6 @@
PORTNAME= opencv
DISTVERSION= 4.11.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= graphics
MAINTAINER= desktop@FreeBSD.org
diff --git a/graphics/pcl-pointclouds/Makefile b/graphics/pcl-pointclouds/Makefile
index 1e5e23d47a4b..773481c48ddc 100644
--- a/graphics/pcl-pointclouds/Makefile
+++ b/graphics/pcl-pointclouds/Makefile
@@ -1,7 +1,7 @@
PORTNAME= pcl
DISTVERSIONPREFIX= pcl-
DISTVERSION= 1.15.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= graphics math
#MASTER_SITES= https://github.com/PointCloudLibrary/${PORTNAME}/releases/download/${PORTNAME}-${DISTVERSION}/
PKGNAMESUFFIX= -pointclouds
diff --git a/graphics/py-fury/Makefile b/graphics/py-fury/Makefile
index 9dd95e0c9314..264aadfb5fbf 100644
--- a/graphics/py-fury/Makefile
+++ b/graphics/py-fury/Makefile
@@ -1,5 +1,6 @@
PORTNAME= fury
DISTVERSION= 0.12.0
+PORTREVISION= 1
CATEGORIES= graphics
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/graphics/py-mayavi/Makefile b/graphics/py-mayavi/Makefile
index 9187f05eaa60..4231c09f8271 100644
--- a/graphics/py-mayavi/Makefile
+++ b/graphics/py-mayavi/Makefile
@@ -1,6 +1,6 @@
PORTNAME= mayavi
DISTVERSION= 4.8.2
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= graphics science python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/graphics/py-pyvista/Makefile b/graphics/py-pyvista/Makefile
index 2b4540d8aa0c..80aa88554f1c 100644
--- a/graphics/py-pyvista/Makefile
+++ b/graphics/py-pyvista/Makefile
@@ -1,6 +1,6 @@
PORTNAME= pyvista
DISTVERSION= 0.34.2
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= graphics python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/math/vtk9/Makefile b/math/vtk9/Makefile
index 85979ec768e3..41087e74f8e4 100644
--- a/math/vtk9/Makefile
+++ b/math/vtk9/Makefile
@@ -1,6 +1,5 @@
PORTNAME= vtk
-DISTVERSION= 9.2.6
-PORTREVISION= 6
+DISTVERSION= 9.5.0
CATEGORIES= math graphics
MASTER_SITES= https://vtk.org/files/release/${VTK_SHORT_VER}/
PKGNAMESUFFIX= 9
diff --git a/math/vtk9/Makefile.version b/math/vtk9/Makefile.version
index 66ceb4b6ed8f..0704e0637ff9 100644
--- a/math/vtk9/Makefile.version
+++ b/math/vtk9/Makefile.version
@@ -1,3 +1,3 @@
# this file is provided for VTK users
-VTK_VER=9.2
+VTK_VER=9.5
diff --git a/math/vtk9/distinfo b/math/vtk9/distinfo
index c73d546ac962..89bd22215236 100644
--- a/math/vtk9/distinfo
+++ b/math/vtk9/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1687488293
-SHA256 (VTK-9.2.6.tar.gz) = 06fc8d49c4e56f498c40fcb38a563ed8d4ec31358d0101e8988f0bb4d539dd12
-SIZE (VTK-9.2.6.tar.gz) = 53810904
+TIMESTAMP = 1750828031
+SHA256 (VTK-9.5.0.tar.gz) = 04ae86246b9557c6b61afbc534a6df099244fbc8f3937f82e6bc0570953af87d
+SIZE (VTK-9.5.0.tar.gz) = 50172790
diff --git a/math/vtk9/files/patch-ThirdParty_cgns_vtkcgns_src_adfh_ADFH.c b/math/vtk9/files/patch-ThirdParty_cgns_vtkcgns_src_adfh_ADFH.c
deleted file mode 100644
index 908a0098eced..000000000000
--- a/math/vtk9/files/patch-ThirdParty_cgns_vtkcgns_src_adfh_ADFH.c
+++ /dev/null
@@ -1,13 +0,0 @@
---- ThirdParty/cgns/vtkcgns/src/adfh/ADFH.c.orig 2022-10-02 11:37:19 UTC
-+++ ThirdParty/cgns/vtkcgns/src/adfh/ADFH.c
-@@ -287,6 +287,10 @@ if (mta_root == NULL){set_error(ADFH_ERR_ROOTNULL, err
- #define CMP_OINFO(r,n) ((r)->fileno==(n)->fileno && \
- (r)->addr==(n)->addr && (r)->addr != HADDR_UNDEF)
-
-+#if H5_VERSION_GE(1,12,0)
-+#undef H5L_info_t
-+#define H5L_info_t H5L_info2_t
-+#endif
-
- static herr_t gfind_by_name(hid_t, const char *, const H5L_info_t*, void *);
- static herr_t find_by_name(hid_t, const char *, const H5A_info_t*, void *);
diff --git a/math/vtk9/files/patch-ThirdParty_diy2_vtkdiy2_include_vtkdiy2_fmt_format.h b/math/vtk9/files/patch-ThirdParty_diy2_vtkdiy2_include_vtkdiy2_fmt_format.h
deleted file mode 100644
index eb9c13efbe2f..000000000000
--- a/math/vtk9/files/patch-ThirdParty_diy2_vtkdiy2_include_vtkdiy2_fmt_format.h
+++ /dev/null
@@ -1,18 +0,0 @@
---- ThirdParty/diy2/vtkdiy2/include/vtkdiy2/fmt/format.h.orig 2023-02-15 04:03:53 UTC
-+++ ThirdParty/diy2/vtkdiy2/include/vtkdiy2/fmt/format.h
-@@ -480,6 +480,7 @@ void buffer<T>::append(const U* begin, const U* end) {
- }
- } // namespace internal
-
-+#ifdef __cpp_char8_t
- // A UTF-8 string view.
- class u8string_view : public basic_string_view<char8_t> {
- public:
-@@ -497,6 +498,7 @@ inline u8string_view operator"" _u(const char* s, std:
- }
- } // namespace literals
- #endif
-+#endif // __cpp_char8_t
-
- // The number of characters to store in the basic_memory_buffer object itself
- // to avoid dynamic memory allocation.
diff --git a/math/vtk9/files/patch-ThirdParty_exodusII_vtkexodusII_src_ex__put__prop.c b/math/vtk9/files/patch-ThirdParty_exodusII_vtkexodusII_src_ex__put__prop.c
deleted file mode 100644
index eb29a277f139..000000000000
--- a/math/vtk9/files/patch-ThirdParty_exodusII_vtkexodusII_src_ex__put__prop.c
+++ /dev/null
@@ -1,14 +0,0 @@
-- fix build with science/netcdf 4.9.3
-- see https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=284680
-
---- ThirdParty/exodusII/vtkexodusII/src/ex_put_prop.c.orig 2025-02-10 02:00:23 UTC
-+++ ThirdParty/exodusII/vtkexodusII/src/ex_put_prop.c
-@@ -243,7 +243,7 @@ int ex_put_prop(int exoid, ex_entity_type obj_type, ex
- vals[0] = 0; /* fill value */
- /* create attribute to cause variable to fill with zeros per routine spec
- */
-- if ((status = nc_put_att_longlong(exoid, propid, _FillValue, int_type, 1, vals)) != NC_NOERR) {
-+ if ((status = nc_put_att_longlong(exoid, propid, NC_FillValue, int_type, 1, vals)) != NC_NOERR) {
- snprintf(errmsg, MAX_ERR_LENGTH,
- "ERROR: failed to create property name fill attribute in file id %d", exoid);
- ex_err_fn(exoid, __func__, errmsg, status);
diff --git a/math/vtk9/files/patch-ThirdParty_exodusII_vtkexodusII_src_ex__put__prop__names.c b/math/vtk9/files/patch-ThirdParty_exodusII_vtkexodusII_src_ex__put__prop__names.c
deleted file mode 100644
index 335822e40906..000000000000
--- a/math/vtk9/files/patch-ThirdParty_exodusII_vtkexodusII_src_ex__put__prop__names.c
+++ /dev/null
@@ -1,14 +0,0 @@
-- fix build with science/netcdf 4.9.3
-- see https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=284680
-
---- ThirdParty/exodusII/vtkexodusII/src/ex_put_prop_names.c.orig 2025-02-10 02:01:23 UTC
-+++ ThirdParty/exodusII/vtkexodusII/src/ex_put_prop_names.c
-@@ -172,7 +172,7 @@ int ex_put_prop_names(int exoid, ex_entity_type obj_ty
-
- /* create attribute to cause variable to fill with zeros per routine spec
- */
-- if ((status = nc_put_att_longlong(exoid, propid, _FillValue, int_type, 1, vals)) != NC_NOERR) {
-+ if ((status = nc_put_att_longlong(exoid, propid, NC_FillValue, int_type, 1, vals)) != NC_NOERR) {
- snprintf(errmsg, MAX_ERR_LENGTH,
- "ERROR: failed to create property name fill attribute in file id %d", exoid);
- ex_err_fn(exoid, __func__, errmsg, status);
diff --git a/math/vtk9/files/patch-ThirdParty_glew_vtkglew_src_glew.c b/math/vtk9/files/patch-ThirdParty_glew_vtkglew_src_glew.c
deleted file mode 100644
index 65889826bdd6..000000000000
--- a/math/vtk9/files/patch-ThirdParty_glew_vtkglew_src_glew.c
+++ /dev/null
@@ -1,10 +0,0 @@
---- ThirdParty/glew/vtkglew/src/glew.c.orig 2024-02-21 22:29:42 UTC
-+++ ThirdParty/glew/vtkglew/src/glew.c
-@@ -38,6 +38,7 @@
-
- #if defined(GLEW_OSMESA)
- # define GLAPI extern
-+# define APIENTRY __stdcall
- # include <GL/osmesa.h>
- #elif defined(GLEW_EGL)
- # include <GL/eglew.h>
diff --git a/math/vtk9/files/patch-ThirdParty_glew_vtkglew_src_glewinfo.c b/math/vtk9/files/patch-ThirdParty_glew_vtkglew_src_glewinfo.c
deleted file mode 100644
index 0ea9659d6ec5..000000000000
--- a/math/vtk9/files/patch-ThirdParty_glew_vtkglew_src_glewinfo.c
+++ /dev/null
@@ -1,10 +0,0 @@
---- ThirdParty/glew/vtkglew/src/glewinfo.c.orig 2024-02-21 22:29:54 UTC
-+++ ThirdParty/glew/vtkglew/src/glewinfo.c
-@@ -38,6 +38,7 @@
- #include <GL/eglew.h>
- #elif defined(GLEW_OSMESA)
- #define GLAPI extern
-+#define APIENTRY __stdcall
- #include <GL/osmesa.h>
- #elif defined(_WIN32)
- #include <GL/wglew.h>
diff --git a/math/vtk9/files/patch-Utilities_octree_octree_octree__node.txx b/math/vtk9/files/patch-Utilities_octree_octree_octree__node.txx
deleted file mode 100644
index de91955442bb..000000000000
--- a/math/vtk9/files/patch-Utilities_octree_octree_octree__node.txx
+++ /dev/null
@@ -1,11 +0,0 @@
---- Utilities/octree/octree/octree_node.txx.orig 2023-02-15 04:03:53 UTC
-+++ Utilities/octree/octree/octree_node.txx
-@@ -207,7 +207,7 @@ const octree_node<T_, d_, A_>& octree_node<T_, d_, A_>
- {
- throw std::domain_error("Attempt to access children of an octree leaf node.");
- }
-- return this->_M_chilren[child];
-+ return this->m_children[child];
- }
-
- /**\brief Return a reference to a child node.
diff --git a/misc/visp/Makefile b/misc/visp/Makefile
index efc868f979f6..d173a26c75f2 100644
--- a/misc/visp/Makefile
+++ b/misc/visp/Makefile
@@ -1,12 +1,13 @@
PORTNAME= visp
DISTVERSION= 3.6.0
-PORTREVISION= 10
+PORTREVISION= 11
CATEGORIES= misc
MASTER_SITES= https://visp-doc.inria.fr/download/releases/
MAINTAINER= yuri@FreeBSD.org
COMMENT= Modular library for visual tracking and visual servoing
-WWW= https://visp.inria.fr/
+WWW= https://visp.inria.fr/ \
+ https://github.com/lagadic/visp
LICENSE= GPLv2+
LICENSE_FILE= ${WRKSRC}/LICENSE.txt
@@ -37,6 +38,8 @@ USE_LDCONFIG= yes
CMAKE_OFF= WITH_QBDEVICE BUILD_EXAMPLES BUILD_TUTORIALS BUILD_TESTS BUILD_DEMOS
+CXXFLAGS+= -I${LOCALBASE}/include/vtk-${VTK_VER} # https://github.com/lagadic/visp/issues/1707
+
OPTIONS_DEFINE= COIN OGRE PCL ZBAR
OPTIONS_DEFAULT= COIN OGRE PCL ZBAR
@@ -51,10 +54,11 @@ OGRE_LIB_DEPENDS= libOgreMain.so:graphics/ogre3d19
PCL_DESC= Include Point Cloud Library support
PCL_CMAKE_BOOL= USE_PCL
PCL_LIB_DEPENDS= libpcl_common.so:graphics/pcl-pointclouds \
- libvtkCommonCore-9.2.so:math/vtk9 # vtk9 is incurred by pcl-pointclouds
+ libvtkCommonCore-${VTK_VER}.so:math/vtk${VTK_VER:R} # vtk9 is incurred by pcl-pointclouds
ZBAR_DESC= Use ZBAR to read bar codes and QR codes
ZBAR_CMAKE_BOOL= USE_ZBAR
ZBAR_LIB_DEPENDS= libzbar.so:graphics/zbar
+.include <../../math/vtk9/Makefile.version>
.include <bsd.port.mk>
diff --git a/misc/visp/files/patch-CMakeLists.txt b/misc/visp/files/patch-CMakeLists.txt
index 893083431163..f5c75760570d 100644
--- a/misc/visp/files/patch-CMakeLists.txt
+++ b/misc/visp/files/patch-CMakeLists.txt
@@ -1,8 +1,17 @@
https://github.com/lagadic/visp/issues/423
---- CMakeLists.txt.orig 2021-03-05 01:09:20 UTC
+--- CMakeLists.txt.orig 2023-09-22 05:39:36 UTC
+++ CMakeLists.txt
-@@ -230,7 +230,7 @@ else() # UNIX
+@@ -124,6 +124,8 @@ project(VISP C CXX)
+
+ project(VISP C CXX)
+
++find_package(VTK REQUIRED) # workaround for https://gitlab.kitware.com/vtk/vtk/-/issues/19716
++
+ list(APPEND CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/cmake")
+
+ include(cmake/VISPUtils.cmake)
+@@ -244,7 +246,7 @@ else() # UNIX
vp_update(VISP_LIB_INSTALL_PATH "${CMAKE_INSTALL_LIBDIR}")
endif()
vp_update(VISP_BIN_INSTALL_PATH "${CMAKE_INSTALL_BINDIR}")
diff --git a/science/InsightToolkit/Makefile b/science/InsightToolkit/Makefile
index 75f332286234..f11586616811 100644
--- a/science/InsightToolkit/Makefile
+++ b/science/InsightToolkit/Makefile
@@ -1,7 +1,7 @@
PORTNAME= InsightToolkit
DISTVERSIONPREFIX= v
DISTVERSION= 5.3.0
-PORTREVISION= 7
+PORTREVISION= 8
CATEGORIES= science biology
MASTER_SITES= https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${DISTVERSION}/:data
DISTFILES= InsightData-${DISTVERSION}.tar.gz:data
diff --git a/science/InsightToolkit/Makefile.remote_modules b/science/InsightToolkit/Makefile.remote_modules
index ed3659eabd22..ac598e13d5cf 100644
--- a/science/InsightToolkit/Makefile.remote_modules
+++ b/science/InsightToolkit/Makefile.remote_modules
@@ -79,7 +79,7 @@ CMAKE_ON+=Module_IOScanco
CMAKE_ON+=Module_IOTransformDCMTK
CMAKE_OFF+=Module_IsotropicWavelets # cmake fails: No such module: "ITKImageIO"
CMAKE_ON+=Module_LabelErodeDilate
-CMAKE_ON+=Module_LesionSizingToolkit
+#CMAKE_ON+=Module_LesionSizingToolkit
CMAKE_ON+=Module_itkMGHImageIO
CMAKE_ON+=Module_MeshNoise
CMAKE_ON+=Module_MeshToPolyData
diff --git a/science/InsightToolkit/pkg-plist b/science/InsightToolkit/pkg-plist
index b2301e5560a8..8f1a4fb86c8f 100644
--- a/science/InsightToolkit/pkg-plist
+++ b/science/InsightToolkit/pkg-plist
@@ -148,12 +148,10 @@ include/ITK-%%ITK_VER%%/ITKTransformExport.h
include/ITK-%%ITK_VER%%/ITKVTKExport.h
include/ITK-%%ITK_VER%%/ITKVideoCoreExport.h
include/ITK-%%ITK_VER%%/ITKVideoIOExport.h
-include/ITK-%%ITK_VER%%/ITKVtkGlueExport.h
include/ITK-%%ITK_VER%%/ITKWatershedsExport.h
include/ITK-%%ITK_VER%%/MinimalPathExtractionExport.h
include/ITK-%%ITK_VER%%/MontageExport.h
include/ITK-%%ITK_VER%%/NrrdIO.h
-include/ITK-%%ITK_VER%%/QuickView.h
include/ITK-%%ITK_VER%%/RTKExport.h
include/ITK-%%ITK_VER%%/SimpleITKFiltersExport.h
include/ITK-%%ITK_VER%%/VNLIterativeSparseSolverTraits.h
@@ -413,8 +411,6 @@ include/ITK-%%ITK_VER%%/itkBinaryThinningImageFilter.h
include/ITK-%%ITK_VER%%/itkBinaryThinningImageFilter.hxx
include/ITK-%%ITK_VER%%/itkBinaryThinningImageFilter3D.h
include/ITK-%%ITK_VER%%/itkBinaryThinningImageFilter3D.hxx
-include/ITK-%%ITK_VER%%/itkBinaryThresholdFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkBinaryThresholdFeatureGenerator.hxx
include/ITK-%%ITK_VER%%/itkBinaryThresholdImageFilter.h
include/ITK-%%ITK_VER%%/itkBinaryThresholdImageFilter.hxx
include/ITK-%%ITK_VER%%/itkBinaryThresholdImageFunction.h
@@ -477,14 +473,6 @@ include/ITK-%%ITK_VER%%/itkCSVNumericObjectFileWriter.hxx
include/ITK-%%ITK_VER%%/itkCacheableScalarFunction.h
include/ITK-%%ITK_VER%%/itkCannyEdgeDetectionImageFilter.h
include/ITK-%%ITK_VER%%/itkCannyEdgeDetectionImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkCannyEdgeDetectionRecursiveGaussianImageFilter.h
-include/ITK-%%ITK_VER%%/itkCannyEdgeDetectionRecursiveGaussianImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkCannyEdgesDistanceAdvectionFieldFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkCannyEdgesDistanceAdvectionFieldFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkCannyEdgesDistanceFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkCannyEdgesDistanceFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkCannyEdgesFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkCannyEdgesFeatureGenerator.hxx
include/ITK-%%ITK_VER%%/itkCannySegmentationLevelSetFunction.h
include/ITK-%%ITK_VER%%/itkCannySegmentationLevelSetFunction.hxx
include/ITK-%%ITK_VER%%/itkCannySegmentationLevelSetImageFilter.h
@@ -579,8 +567,6 @@ include/ITK-%%ITK_VER%%/itkConceptChecking.h
include/ITK-%%ITK_VER%%/itkConditionalConstIterator.h
include/ITK-%%ITK_VER%%/itkConfidenceConnectedImageFilter.h
include/ITK-%%ITK_VER%%/itkConfidenceConnectedImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkConfidenceConnectedSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkConfidenceConnectedSegmentationModule.hxx
include/ITK-%%ITK_VER%%/itkConfigure.h
include/ITK-%%ITK_VER%%/itkConformalFlatteningMeshFilter.h
include/ITK-%%ITK_VER%%/itkConformalFlatteningMeshFilter.hxx
@@ -599,8 +585,6 @@ include/ITK-%%ITK_VER%%/itkConnectedRegionsMeshFilter.h
include/ITK-%%ITK_VER%%/itkConnectedRegionsMeshFilter.hxx
include/ITK-%%ITK_VER%%/itkConnectedThresholdImageFilter.h
include/ITK-%%ITK_VER%%/itkConnectedThresholdImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkConnectedThresholdSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkConnectedThresholdSegmentationModule.hxx
include/ITK-%%ITK_VER%%/itkConstNeighborhoodIterator.h
include/ITK-%%ITK_VER%%/itkConstNeighborhoodIterator.hxx
include/ITK-%%ITK_VER%%/itkConstNeighborhoodIteratorWithOnlyIndex.h
@@ -765,9 +749,6 @@ include/ITK-%%ITK_VER%%/itkDescoteauxEigenToMeasureImageFilter.h
include/ITK-%%ITK_VER%%/itkDescoteauxEigenToMeasureImageFilter.hxx
include/ITK-%%ITK_VER%%/itkDescoteauxEigenToMeasureParameterEstimationFilter.h
include/ITK-%%ITK_VER%%/itkDescoteauxEigenToMeasureParameterEstimationFilter.hxx
-include/ITK-%%ITK_VER%%/itkDescoteauxSheetnessFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkDescoteauxSheetnessFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkDescoteauxSheetnessImageFilter.h
include/ITK-%%ITK_VER%%/itkDiffeomorphicDemonsRegistrationFilter.h
include/ITK-%%ITK_VER%%/itkDiffeomorphicDemonsRegistrationFilter.hxx
include/ITK-%%ITK_VER%%/itkDifferenceOfGaussiansGradientImageFilter.h
@@ -927,10 +908,6 @@ include/ITK-%%ITK_VER%%/itkFastChamferDistanceImageFilter.hxx
include/ITK-%%ITK_VER%%/itkFastGrowCut.h
include/ITK-%%ITK_VER%%/itkFastGrowCut.hxx
include/ITK-%%ITK_VER%%/itkFastIncrementalBinaryDilateImageFilter.h
-include/ITK-%%ITK_VER%%/itkFastMarchingAndGeodesicActiveContourLevelSetSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkFastMarchingAndGeodesicActiveContourLevelSetSegmentationModule.hxx
-include/ITK-%%ITK_VER%%/itkFastMarchingAndShapeDetectionLevelSetSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkFastMarchingAndShapeDetectionLevelSetSegmentationModule.hxx
include/ITK-%%ITK_VER%%/itkFastMarchingBase.h
include/ITK-%%ITK_VER%%/itkFastMarchingBase.hxx
include/ITK-%%ITK_VER%%/itkFastMarchingExtensionImageFilter.h
@@ -947,8 +924,6 @@ include/ITK-%%ITK_VER%%/itkFastMarchingNumberOfElementsStoppingCriterion.h
include/ITK-%%ITK_VER%%/itkFastMarchingQuadEdgeMeshFilterBase.h
include/ITK-%%ITK_VER%%/itkFastMarchingQuadEdgeMeshFilterBase.hxx
include/ITK-%%ITK_VER%%/itkFastMarchingReachedTargetNodesStoppingCriterion.h
-include/ITK-%%ITK_VER%%/itkFastMarchingSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkFastMarchingSegmentationModule.hxx
include/ITK-%%ITK_VER%%/itkFastMarchingStoppingCriterionBase.h
include/ITK-%%ITK_VER%%/itkFastMarchingThresholdStoppingCriterion.h
include/ITK-%%ITK_VER%%/itkFastMarchingTraits.h
@@ -960,10 +935,6 @@ include/ITK-%%ITK_VER%%/itkFastSymmetricForcesDemonsRegistrationFilter.h
include/ITK-%%ITK_VER%%/itkFastSymmetricForcesDemonsRegistrationFilter.hxx
include/ITK-%%ITK_VER%%/itkFastSymmetricForcesDemonsRegistrationFunction.h
include/ITK-%%ITK_VER%%/itkFastSymmetricForcesDemonsRegistrationFunction.hxx
-include/ITK-%%ITK_VER%%/itkFeatureAggregator.h
-include/ITK-%%ITK_VER%%/itkFeatureAggregator.hxx
-include/ITK-%%ITK_VER%%/itkFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkFeatureGenerator.hxx
include/ITK-%%ITK_VER%%/itkFileListVideoIO.h
include/ITK-%%ITK_VER%%/itkFileListVideoIOFactory.h
include/ITK-%%ITK_VER%%/itkFileOutputWindow.h
@@ -1012,9 +983,6 @@ include/ITK-%%ITK_VER%%/itkFrameAverageVideoFilter.h
include/ITK-%%ITK_VER%%/itkFrameAverageVideoFilter.hxx
include/ITK-%%ITK_VER%%/itkFrameDifferenceVideoFilter.h
include/ITK-%%ITK_VER%%/itkFrameDifferenceVideoFilter.hxx
-include/ITK-%%ITK_VER%%/itkFrangiTubularnessFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkFrangiTubularnessFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkFrangiTubularnessImageFilter.h
include/ITK-%%ITK_VER%%/itkFreeSurferAsciiMeshIO.h
include/ITK-%%ITK_VER%%/itkFreeSurferAsciiMeshIOFactory.h
include/ITK-%%ITK_VER%%/itkFreeSurferBinaryMeshIO.h
@@ -1144,8 +1112,6 @@ include/ITK-%%ITK_VER%%/itkGeodesicActiveContourLevelSetFunction.h
include/ITK-%%ITK_VER%%/itkGeodesicActiveContourLevelSetFunction.hxx
include/ITK-%%ITK_VER%%/itkGeodesicActiveContourLevelSetImageFilter.h
include/ITK-%%ITK_VER%%/itkGeodesicActiveContourLevelSetImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkGeodesicActiveContourLevelSetSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkGeodesicActiveContourLevelSetSegmentationModule.hxx
include/ITK-%%ITK_VER%%/itkGeodesicActiveContourShapePriorLevelSetFunction.h
include/ITK-%%ITK_VER%%/itkGeodesicActiveContourShapePriorLevelSetFunction.hxx
include/ITK-%%ITK_VER%%/itkGeodesicActiveContourShapePriorLevelSetImageFilter.h
@@ -1179,8 +1145,6 @@ include/ITK-%%ITK_VER%%/itkGradientMagnitudeImageFilter.h
include/ITK-%%ITK_VER%%/itkGradientMagnitudeImageFilter.hxx
include/ITK-%%ITK_VER%%/itkGradientMagnitudeRecursiveGaussianImageFilter.h
include/ITK-%%ITK_VER%%/itkGradientMagnitudeRecursiveGaussianImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkGradientMagnitudeSigmoidFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkGradientMagnitudeSigmoidFeatureGenerator.hxx
include/ITK-%%ITK_VER%%/itkGradientNDAnisotropicDiffusionFunction.h
include/ITK-%%ITK_VER%%/itkGradientNDAnisotropicDiffusionFunction.hxx
include/ITK-%%ITK_VER%%/itkGradientRecursiveGaussianImageFilter.h
@@ -1207,8 +1171,6 @@ include/ITK-%%ITK_VER%%/itkGrayscaleGeodesicErodeImageFilter.h
include/ITK-%%ITK_VER%%/itkGrayscaleGeodesicErodeImageFilter.hxx
include/ITK-%%ITK_VER%%/itkGrayscaleGrindPeakImageFilter.h
include/ITK-%%ITK_VER%%/itkGrayscaleGrindPeakImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkGrayscaleImageSegmentationVolumeEstimator.h
-include/ITK-%%ITK_VER%%/itkGrayscaleImageSegmentationVolumeEstimator.hxx
include/ITK-%%ITK_VER%%/itkGrayscaleMorphologicalClosingImageFilter.h
include/ITK-%%ITK_VER%%/itkGrayscaleMorphologicalClosingImageFilter.hxx
include/ITK-%%ITK_VER%%/itkGrayscaleMorphologicalOpeningImageFilter.h
@@ -1466,8 +1428,6 @@ include/ITK-%%ITK_VER%%/itkImageToSpatialObjectMetric.h
include/ITK-%%ITK_VER%%/itkImageToSpatialObjectMetric.hxx
include/ITK-%%ITK_VER%%/itkImageToSpatialObjectRegistrationMethod.h
include/ITK-%%ITK_VER%%/itkImageToSpatialObjectRegistrationMethod.hxx
-include/ITK-%%ITK_VER%%/itkImageToVTKImageFilter.h
-include/ITK-%%ITK_VER%%/itkImageToVTKImageFilter.hxx
include/ITK-%%ITK_VER%%/itkImageToVideoFilter.h
include/ITK-%%ITK_VER%%/itkImageToVideoFilter.hxx
include/ITK-%%ITK_VER%%/itkImageVectorOptimizerParametersHelper.h
@@ -1532,10 +1492,6 @@ include/ITK-%%ITK_VER%%/itkIsolatedWatershedImageFilter.h
include/ITK-%%ITK_VER%%/itkIsolatedWatershedImageFilter.hxx
include/ITK-%%ITK_VER%%/itkIsotropicFourthOrderLevelSetImageFilter.h
include/ITK-%%ITK_VER%%/itkIsotropicFourthOrderLevelSetImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkIsotropicResampler.h
-include/ITK-%%ITK_VER%%/itkIsotropicResampler.hxx
-include/ITK-%%ITK_VER%%/itkIsotropicResamplerImageFilter.h
-include/ITK-%%ITK_VER%%/itkIsotropicResamplerImageFilter.hxx
include/ITK-%%ITK_VER%%/itkIterateNeighborhoodOptimizer.h
include/ITK-%%ITK_VER%%/itkIterationReporter.h
include/ITK-%%ITK_VER%%/itkIterativeDeconvolutionImageFilter.h
@@ -1686,8 +1642,6 @@ include/ITK-%%ITK_VER%%/itkLandmarkDisplacementFieldSource.h
include/ITK-%%ITK_VER%%/itkLandmarkDisplacementFieldSource.hxx
include/ITK-%%ITK_VER%%/itkLandmarkSpatialObject.h
include/ITK-%%ITK_VER%%/itkLandmarkSpatialObject.hxx
-include/ITK-%%ITK_VER%%/itkLandmarksReader.h
-include/ITK-%%ITK_VER%%/itkLandmarksReader.hxx
include/ITK-%%ITK_VER%%/itkLandweberDeconvolutionImageFilter.h
include/ITK-%%ITK_VER%%/itkLandweberDeconvolutionImageFilter.hxx
include/ITK-%%ITK_VER%%/itkLaplacianDeformationQuadEdgeMeshFilter.h
@@ -1708,10 +1662,6 @@ include/ITK-%%ITK_VER%%/itkLaplacianSegmentationLevelSetImageFilter.h
include/ITK-%%ITK_VER%%/itkLaplacianSegmentationLevelSetImageFilter.hxx
include/ITK-%%ITK_VER%%/itkLaplacianSharpeningImageFilter.h
include/ITK-%%ITK_VER%%/itkLaplacianSharpeningImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkLesionSegmentationImageFilter8.h
-include/ITK-%%ITK_VER%%/itkLesionSegmentationImageFilter8.hxx
-include/ITK-%%ITK_VER%%/itkLesionSegmentationMethod.h
-include/ITK-%%ITK_VER%%/itkLesionSegmentationMethod.hxx
include/ITK-%%ITK_VER%%/itkLevelSet.h
include/ITK-%%ITK_VER%%/itkLevelSetBase.h
include/ITK-%%ITK_VER%%/itkLevelSetBase.hxx
@@ -1807,7 +1757,6 @@ include/ITK-%%ITK_VER%%/itkLinearInterpolateImageFunction.h
include/ITK-%%ITK_VER%%/itkLinearInterpolateImageFunction.hxx
include/ITK-%%ITK_VER%%/itkListSample.h
include/ITK-%%ITK_VER%%/itkListSample.hxx
-include/ITK-%%ITK_VER%%/itkLocalStructureImageFilter.h
include/ITK-%%ITK_VER%%/itkLog10ImageAdaptor.h
include/ITK-%%ITK_VER%%/itkLog10ImageFilter.h
include/ITK-%%ITK_VER%%/itkLogGaborFreqImageSource.h
@@ -1822,8 +1771,6 @@ include/ITK-%%ITK_VER%%/itkLoggerOutput.h
include/ITK-%%ITK_VER%%/itkLoggerThreadWrapper.h
include/ITK-%%ITK_VER%%/itkLoggerThreadWrapper.hxx
include/ITK-%%ITK_VER%%/itkLogicOpsFunctors.h
-include/ITK-%%ITK_VER%%/itkLungWallFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkLungWallFeatureGenerator.hxx
include/ITK-%%ITK_VER%%/itkMINCImageIO.h
include/ITK-%%ITK_VER%%/itkMINCImageIOFactory.h
include/ITK-%%ITK_VER%%/itkMINCTransformAdapter.h
@@ -1896,8 +1843,6 @@ include/ITK-%%ITK_VER%%/itkMaximumDecisionRule.h
include/ITK-%%ITK_VER%%/itkMaximumEntropyThresholdCalculator.h
include/ITK-%%ITK_VER%%/itkMaximumEntropyThresholdCalculator.hxx
include/ITK-%%ITK_VER%%/itkMaximumEntropyThresholdImageFilter.h
-include/ITK-%%ITK_VER%%/itkMaximumFeatureAggregator.h
-include/ITK-%%ITK_VER%%/itkMaximumFeatureAggregator.hxx
include/ITK-%%ITK_VER%%/itkMaximumImageFilter.h
include/ITK-%%ITK_VER%%/itkMaximumProjectionImageFilter.h
include/ITK-%%ITK_VER%%/itkMaximumRatioDecisionRule.h
@@ -2015,8 +1960,6 @@ include/ITK-%%ITK_VER%%/itkMinMaxCurvatureFlowImageFilter.hxx
include/ITK-%%ITK_VER%%/itkMiniPipelineSeparableImageFilter.h
include/ITK-%%ITK_VER%%/itkMiniPipelineSeparableImageFilter.hxx
include/ITK-%%ITK_VER%%/itkMinimumDecisionRule.h
-include/ITK-%%ITK_VER%%/itkMinimumFeatureAggregator.h
-include/ITK-%%ITK_VER%%/itkMinimumFeatureAggregator.hxx
include/ITK-%%ITK_VER%%/itkMinimumImageFilter.h
include/ITK-%%ITK_VER%%/itkMinimumMaximumImageCalculator.h
include/ITK-%%ITK_VER%%/itkMinimumMaximumImageCalculator.hxx
@@ -2039,10 +1982,6 @@ include/ITK-%%ITK_VER%%/itkMorphologicalDistanceTransformImageFilter.h
include/ITK-%%ITK_VER%%/itkMorphologicalDistanceTransformImageFilter.hxx
include/ITK-%%ITK_VER%%/itkMorphologicalGradientImageFilter.h
include/ITK-%%ITK_VER%%/itkMorphologicalGradientImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkMorphologicalOpeningFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkMorphologicalOpeningFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkMorphologicalOpenningFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkMorphologicalOpenningFeatureGenerator.hxx
include/ITK-%%ITK_VER%%/itkMorphologicalSharpeningImageFilter.h
include/ITK-%%ITK_VER%%/itkMorphologicalSharpeningImageFilter.hxx
include/ITK-%%ITK_VER%%/itkMorphologicalSignedDistanceTransformImageFilter.h
@@ -2529,16 +2468,12 @@ include/ITK-%%ITK_VER%%/itkRegionBasedLevelSetFunction.hxx
include/ITK-%%ITK_VER%%/itkRegionBasedLevelSetFunctionData.h
include/ITK-%%ITK_VER%%/itkRegionBasedLevelSetFunctionData.hxx
include/ITK-%%ITK_VER%%/itkRegionBasedLevelSetFunctionSharedData.h
-include/ITK-%%ITK_VER%%/itkRegionCompetitionImageFilter.h
-include/ITK-%%ITK_VER%%/itkRegionCompetitionImageFilter.hxx
include/ITK-%%ITK_VER%%/itkRegionConstrainedSubsampler.h
include/ITK-%%ITK_VER%%/itkRegionConstrainedSubsampler.hxx
include/ITK-%%ITK_VER%%/itkRegionFromReferenceLabelMapFilter.h
include/ITK-%%ITK_VER%%/itkRegionFromReferenceLabelMapFilter.hxx
include/ITK-%%ITK_VER%%/itkRegionGrowImageFilter.h
include/ITK-%%ITK_VER%%/itkRegionGrowImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkRegionGrowingSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkRegionGrowingSegmentationModule.hxx
include/ITK-%%ITK_VER%%/itkRegionOfInterestImageFilter.h
include/ITK-%%ITK_VER%%/itkRegionOfInterestImageFilter.hxx
include/ITK-%%ITK_VER%%/itkRegionalMaximaImageFilter.h
@@ -2619,12 +2554,6 @@ include/ITK-%%ITK_VER%%/itkSampleToHistogramFilter.h
include/ITK-%%ITK_VER%%/itkSampleToHistogramFilter.hxx
include/ITK-%%ITK_VER%%/itkSampleToSubsampleFilter.h
include/ITK-%%ITK_VER%%/itkSampleToSubsampleFilter.hxx
-include/ITK-%%ITK_VER%%/itkSatoLocalStructureFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkSatoLocalStructureFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkSatoVesselnessFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkSatoVesselnessFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkSatoVesselnessSigmoidFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkSatoVesselnessSigmoidFeatureGenerator.hxx
include/ITK-%%ITK_VER%%/itkScalableAffineTransform.h
include/ITK-%%ITK_VER%%/itkScalableAffineTransform.hxx
include/ITK-%%ITK_VER%%/itkScalarAnisotropicDiffusionFunction.h
@@ -2677,11 +2606,7 @@ include/ITK-%%ITK_VER%%/itkSegmentationLevelSetFunction.h
include/ITK-%%ITK_VER%%/itkSegmentationLevelSetFunction.hxx
include/ITK-%%ITK_VER%%/itkSegmentationLevelSetImageFilter.h
include/ITK-%%ITK_VER%%/itkSegmentationLevelSetImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkSegmentationModule.hxx
include/ITK-%%ITK_VER%%/itkSegmentationRegion.h
-include/ITK-%%ITK_VER%%/itkSegmentationVolumeEstimator.h
-include/ITK-%%ITK_VER%%/itkSegmentationVolumeEstimator.hxx
include/ITK-%%ITK_VER%%/itkShanbhagThresholdCalculator.h
include/ITK-%%ITK_VER%%/itkShanbhagThresholdCalculator.hxx
include/ITK-%%ITK_VER%%/itkShanbhagThresholdImageFilter.h
@@ -2689,8 +2614,6 @@ include/ITK-%%ITK_VER%%/itkShapeDetectionLevelSetFunction.h
include/ITK-%%ITK_VER%%/itkShapeDetectionLevelSetFunction.hxx
include/ITK-%%ITK_VER%%/itkShapeDetectionLevelSetImageFilter.h
include/ITK-%%ITK_VER%%/itkShapeDetectionLevelSetImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkShapeDetectionLevelSetSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkShapeDetectionLevelSetSegmentationModule.hxx
include/ITK-%%ITK_VER%%/itkShapeKeepNObjectsLabelMapFilter.h
include/ITK-%%ITK_VER%%/itkShapeKeepNObjectsLabelMapFilter.hxx
include/ITK-%%ITK_VER%%/itkShapeLabelMapFilter.h
@@ -2741,8 +2664,6 @@ include/ITK-%%ITK_VER%%/itkSiddonJacobsRayCastInterpolateImageFunction.h
include/ITK-%%ITK_VER%%/itkSiddonJacobsRayCastInterpolateImageFunction.hxx
include/ITK-%%ITK_VER%%/itkSiemensVisionImageIO.h
include/ITK-%%ITK_VER%%/itkSiemensVisionImageIOFactory.h
-include/ITK-%%ITK_VER%%/itkSigmoidFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkSigmoidFeatureGenerator.hxx
include/ITK-%%ITK_VER%%/itkSigmoidImageFilter.h
include/ITK-%%ITK_VER%%/itkSignedDanielssonDistanceMapImageFilter.h
include/ITK-%%ITK_VER%%/itkSignedDanielssonDistanceMapImageFilter.hxx
@@ -2775,8 +2696,6 @@ include/ITK-%%ITK_VER%%/itkSinRegularizedHeavisideStepFunction.h
include/ITK-%%ITK_VER%%/itkSinRegularizedHeavisideStepFunction.hxx
include/ITK-%%ITK_VER%%/itkSingleImageCostFunction.h
include/ITK-%%ITK_VER%%/itkSingleImageCostFunction.hxx
-include/ITK-%%ITK_VER%%/itkSinglePhaseLevelSetSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkSinglePhaseLevelSetSegmentationModule.hxx
include/ITK-%%ITK_VER%%/itkSingleValuedCostFunction.h
include/ITK-%%ITK_VER%%/itkSingleValuedCostFunctionv4.h
include/ITK-%%ITK_VER%%/itkSingleValuedNonLinearOptimizer.h
@@ -3105,8 +3024,6 @@ include/ITK-%%ITK_VER%%/itkVTKImageIO.h
include/ITK-%%ITK_VER%%/itkVTKImageIOFactory.h
include/ITK-%%ITK_VER%%/itkVTKImageImport.h
include/ITK-%%ITK_VER%%/itkVTKImageImport.hxx
-include/ITK-%%ITK_VER%%/itkVTKImageToImageFilter.h
-include/ITK-%%ITK_VER%%/itkVTKImageToImageFilter.hxx
include/ITK-%%ITK_VER%%/itkVTKPolyDataMeshIO.h
include/ITK-%%ITK_VER%%/itkVTKPolyDataMeshIOFactory.h
include/ITK-%%ITK_VER%%/itkVTKPolyDataReader.h
@@ -3227,8 +3144,6 @@ include/ITK-%%ITK_VER%%/itkVersorTransform.hxx
include/ITK-%%ITK_VER%%/itkVersorTransformOptimizer.h
include/ITK-%%ITK_VER%%/itkVertexCell.h
include/ITK-%%ITK_VER%%/itkVertexCell.hxx
-include/ITK-%%ITK_VER%%/itkVesselEnhancingDiffusion3DImageFilter.h
-include/ITK-%%ITK_VER%%/itkVesselEnhancingDiffusion3DImageFilter.hxx
include/ITK-%%ITK_VER%%/itkVideoFileReader.h
include/ITK-%%ITK_VER%%/itkVideoFileReader.hxx
include/ITK-%%ITK_VER%%/itkVideoFileWriter.h
@@ -3241,8 +3156,6 @@ include/ITK-%%ITK_VER%%/itkVideoStream.h
include/ITK-%%ITK_VER%%/itkVideoStream.hxx
include/ITK-%%ITK_VER%%/itkVideoToVideoFilter.h
include/ITK-%%ITK_VER%%/itkVideoToVideoFilter.hxx
-include/ITK-%%ITK_VER%%/itkViewImage.h
-include/ITK-%%ITK_VER%%/itkViewImage.hxx
include/ITK-%%ITK_VER%%/itkVnlComplexToComplex1DFFTImageFilter.h
include/ITK-%%ITK_VER%%/itkVnlComplexToComplex1DFFTImageFilter.hxx
include/ITK-%%ITK_VER%%/itkVnlComplexToComplexFFTImageFilter.h
@@ -3276,8 +3189,6 @@ include/ITK-%%ITK_VER%%/itkVoronoiSegmentationImageFilterBase.h
include/ITK-%%ITK_VER%%/itkVoronoiSegmentationImageFilterBase.hxx
include/ITK-%%ITK_VER%%/itkVoronoiSegmentationRGBImageFilter.h
include/ITK-%%ITK_VER%%/itkVoronoiSegmentationRGBImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkVotingBinaryHoleFillFloodingImageFilter.h
-include/ITK-%%ITK_VER%%/itkVotingBinaryHoleFillFloodingImageFilter.hxx
include/ITK-%%ITK_VER%%/itkVotingBinaryHoleFillingImageFilter.h
include/ITK-%%ITK_VER%%/itkVotingBinaryHoleFillingImageFilter.hxx
include/ITK-%%ITK_VER%%/itkVotingBinaryImageFilter.h
@@ -3321,8 +3232,6 @@ include/ITK-%%ITK_VER%%/itkWeightedCovarianceSampleFilter.h
include/ITK-%%ITK_VER%%/itkWeightedCovarianceSampleFilter.hxx
include/ITK-%%ITK_VER%%/itkWeightedMeanSampleFilter.h
include/ITK-%%ITK_VER%%/itkWeightedMeanSampleFilter.hxx
-include/ITK-%%ITK_VER%%/itkWeightedSumFeatureAggregator.h
-include/ITK-%%ITK_VER%%/itkWeightedSumFeatureAggregator.hxx
include/ITK-%%ITK_VER%%/itkWhitakerSparseLevelSetImage.h
include/ITK-%%ITK_VER%%/itkWhitakerSparseLevelSetImage.hxx
include/ITK-%%ITK_VER%%/itkWhiteTopHatImageFilter.h
@@ -3855,7 +3764,6 @@ include/ITK-%%ITK_VER%%/rtkZengBackProjectionImageFilter.hxx
include/ITK-%%ITK_VER%%/rtkZengForwardProjectionImageFilter.h
include/ITK-%%ITK_VER%%/rtkZengForwardProjectionImageFilter.hxx
include/ITK-%%ITK_VER%%/stub.h
-include/ITK-%%ITK_VER%%/vtkCaptureScreen.h
include/ITK-%%ITK_VER%%/znzlib.h
include/RTK/lpsolve/lp_Hash.h
include/RTK/lpsolve/lp_MDO.h
@@ -4045,11 +3953,9 @@ lib/cmake/ITK-%%ITK_VER%%/Modules/ITKVideoCore.cmake
lib/cmake/ITK-%%ITK_VER%%/Modules/ITKVideoFiltering.cmake
lib/cmake/ITK-%%ITK_VER%%/Modules/ITKVideoIO.cmake
lib/cmake/ITK-%%ITK_VER%%/Modules/ITKVoronoi.cmake
-lib/cmake/ITK-%%ITK_VER%%/Modules/ITKVtkGlue.cmake
lib/cmake/ITK-%%ITK_VER%%/Modules/ITKWatersheds.cmake
lib/cmake/ITK-%%ITK_VER%%/Modules/ITKZLIB.cmake
lib/cmake/ITK-%%ITK_VER%%/Modules/LabelErodeDilate.cmake
-lib/cmake/ITK-%%ITK_VER%%/Modules/LesionSizingToolkit.cmake
lib/cmake/ITK-%%ITK_VER%%/Modules/MeshNoise.cmake
lib/cmake/ITK-%%ITK_VER%%/Modules/MeshToPolyData.cmake
lib/cmake/ITK-%%ITK_VER%%/Modules/MinimalPathExtraction.cmake
@@ -4231,8 +4137,6 @@ lib/libITKVideoCore-%%ITK_VER%%.so
lib/libITKVideoCore-%%ITK_VER%%.so.1
lib/libITKVideoIO-%%ITK_VER%%.so
lib/libITKVideoIO-%%ITK_VER%%.so.1
-lib/libITKVtkGlue-%%ITK_VER%%.so
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