git: 3a7978fed606 - main - biology/bcftools: Update to 1.22

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From: Jason W. Bacon <jwb_at_FreeBSD.org>
Date: Wed, 04 Jun 2025 13:26:16 UTC
The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=3a7978fed606e402bd600789cce451480f87b2b5

commit 3a7978fed606e402bd600789cce451480f87b2b5
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2025-06-04 13:25:02 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2025-06-04 13:26:12 +0000

    biology/bcftools: Update to 1.22
    
    Numerous fixes and enhancements
    Changes: https://github.com/samtools/bcftools/releases
    Update by: Hayzam Sherif
    
    Reported by:    portscout
---
 biology/bcftools/Makefile  | 4 ++--
 biology/bcftools/distinfo  | 6 +++---
 biology/bcftools/pkg-plist | 2 ++
 3 files changed, 7 insertions(+), 5 deletions(-)

diff --git a/biology/bcftools/Makefile b/biology/bcftools/Makefile
index f04c0777bc27..3a1c7bc91002 100644
--- a/biology/bcftools/Makefile
+++ b/biology/bcftools/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	bcftools
-PORTVERSION=	1.21
+PORTVERSION=	1.22
 CATEGORIES=	biology
 
 MAINTAINER=	jwb@FreeBSD.org
@@ -9,7 +9,7 @@ WWW=		https://www.htslib.org/
 LICENSE=	MIT
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
-BUILD_DEPENDS=	htslib>=1.21:biology/htslib
+BUILD_DEPENDS=	htslib>=1.22:biology/htslib
 LIB_DEPENDS=	libhts.so:biology/htslib
 TEST_DEPENDS=	bash:shells/bash
 RUN_DEPENDS=	bash:shells/bash
diff --git a/biology/bcftools/distinfo b/biology/bcftools/distinfo
index a39dbc0e3ca0..187e684df6f4 100644
--- a/biology/bcftools/distinfo
+++ b/biology/bcftools/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1727437561
-SHA256 (samtools-bcftools-1.21_GH0.tar.gz) = 7484695c5d833fb1a89c2b886ec302db0514ba3c8e5ef7397b9302fa8bd37f8d
-SIZE (samtools-bcftools-1.21_GH0.tar.gz) = 3665160
+TIMESTAMP = 1748951423
+SHA256 (samtools-bcftools-1.22_GH0.tar.gz) = 1608e547daf7bd5ab7d52dea57019f57da3fdfb29bc26dece1e8d01a999a9a2d
+SIZE (samtools-bcftools-1.22_GH0.tar.gz) = 3751342
diff --git a/biology/bcftools/pkg-plist b/biology/bcftools/pkg-plist
index 6aa7a6d9f73e..8d7cedf90291 100644
--- a/biology/bcftools/pkg-plist
+++ b/biology/bcftools/pkg-plist
@@ -45,4 +45,6 @@ libexec/bcftools/trio-stats.so
 libexec/bcftools/trio-switch-rate.so
 libexec/bcftools/variant-distance.so
 libexec/bcftools/variantkey-hex.so
+libexec/bcftools/vcf2table.so
+libexec/bcftools/vrfs.so
 share/man/man1/bcftools.1.gz