git: 3c62a6836854 - main - biology/samtools: Update to 1.22

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From: Jason W. Bacon <jwb_at_FreeBSD.org>
Date: Wed, 04 Jun 2025 13:26:14 UTC
The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=3c62a68368545af4239ba09752fe854f3a31f96e

commit 3c62a68368545af4239ba09752fe854f3a31f96e
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2025-06-04 13:22:26 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2025-06-04 13:26:12 +0000

    biology/samtools: Update to 1.22
    
    Numerous fixes and enhancements
    Changes: https://github.com/samtools/samtools/releases
    Update by: Hayzam Sherif
    
    Reported by:    portscout
---
 biology/samtools/Makefile  | 4 ++--
 biology/samtools/distinfo  | 6 +++---
 biology/samtools/pkg-plist | 1 +
 3 files changed, 6 insertions(+), 5 deletions(-)

diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile
index 496dfc8af2a1..f0ce1807eecd 100644
--- a/biology/samtools/Makefile
+++ b/biology/samtools/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	samtools
-DISTVERSION=	1.21
+DISTVERSION=	1.22
 CATEGORIES=	biology
 
 MAINTAINER=	jwb@FreeBSD.org
@@ -9,7 +9,7 @@ WWW=		https://www.htslib.org/
 LICENSE=	MIT
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
-BUILD_DEPENDS=	htslib>=1.21:biology/htslib
+BUILD_DEPENDS=	htslib>=1.22:biology/htslib
 LIB_DEPENDS=	libhts.so:biology/htslib
 TEST_DEPENDS=	bash:shells/bash
 
diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo
index 867f9408bd11..69760896c894 100644
--- a/biology/samtools/distinfo
+++ b/biology/samtools/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1727437810
-SHA256 (samtools-samtools-1.21_GH0.tar.gz) = b327b85d3d60771ede370c8bcae0570e7704da39abddfe8e930a85b80aabffac
-SIZE (samtools-samtools-1.21_GH0.tar.gz) = 5682709
+TIMESTAMP = 1748951307
+SHA256 (samtools-samtools-1.22_GH0.tar.gz) = dbe62a97d19634a930033ce302b340a5109263efc371b83481182385a98bcdda
+SIZE (samtools-samtools-1.22_GH0.tar.gz) = 5742299
diff --git a/biology/samtools/pkg-plist b/biology/samtools/pkg-plist
index 2ef37918b44f..f841e6b58a07 100644
--- a/biology/samtools/pkg-plist
+++ b/biology/samtools/pkg-plist
@@ -26,6 +26,7 @@ share/man/man1/samtools-ampliconstats.1.gz
 share/man/man1/samtools-bedcov.1.gz
 share/man/man1/samtools-calmd.1.gz
 share/man/man1/samtools-cat.1.gz
+share/man/man1/samtools-checksum.1.gz
 share/man/man1/samtools-collate.1.gz
 share/man/man1/samtools-consensus.1.gz
 share/man/man1/samtools-coverage.1.gz