git: 8e5f53e29c3c - main - science/py-DendroPy: Remove expired port
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Date: Mon, 02 Jun 2025 19:01:46 UTC
The branch main has been updated by rene:
URL: https://cgit.FreeBSD.org/ports/commit/?id=8e5f53e29c3ccf869c4c44506c4c35aa824d9a21
commit 8e5f53e29c3ccf869c4c44506c4c35aa824d9a21
Author: Rene Ladan <rene@FreeBSD.org>
AuthorDate: 2025-06-02 19:01:40 +0000
Commit: Rene Ladan <rene@FreeBSD.org>
CommitDate: 2025-06-02 19:01:40 +0000
science/py-DendroPy: Remove expired port
2025-03-31 science/py-DendroPy: Depends on expired devel/py-pytest-runner
---
MOVED | 1 +
science/Makefile | 1 -
science/py-DendroPy/Makefile | 24 ------------------------
science/py-DendroPy/distinfo | 3 ---
science/py-DendroPy/pkg-descr | 2 --
science/py-DendroPy/pkg-message | 11 -----------
6 files changed, 1 insertion(+), 41 deletions(-)
diff --git a/MOVED b/MOVED
index ff6d0dab6e53..7cef68174a79 100644
--- a/MOVED
+++ b/MOVED
@@ -4492,3 +4492,4 @@ textproc/py-colorclass||2025-06-02|Has expired: Upstream repository has been arc
security/py-oauth2client||2025-06-02|Has expired: Deprecated by upstream. Use security/py-google-auth or security/py-oauthlib instead. See https://google-auth.readthedocs.io/en/latest/oauth2client-deprecation.html for details
math/py-grandalf||2025-06-02|Has expired: Depends on expired devel/py-pytest-runner
multimedia/py-ffmpeg-python||2025-06-02|Has expired: Depends on expired devel/py-pytest-runner
+science/py-DendroPy||2025-06-02|Has expired: Depends on expired devel/py-pytest-runner
diff --git a/science/Makefile b/science/Makefile
index fa2e9d6f9404..5f8620db1e5d 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -277,7 +277,6 @@
SUBDIR += precice
SUBDIR += psi4
SUBDIR += pulseview
- SUBDIR += py-DendroPy
SUBDIR += py-GPy
SUBDIR += py-GPyOpt
SUBDIR += py-HepMC3
diff --git a/science/py-DendroPy/Makefile b/science/py-DendroPy/Makefile
deleted file mode 100644
index c92414b1f2d8..000000000000
--- a/science/py-DendroPy/Makefile
+++ /dev/null
@@ -1,24 +0,0 @@
-PORTNAME= DendroPy
-PORTVERSION= 5.0.1
-PORTREVISION= 1
-CATEGORIES= science python
-MASTER_SITES= PYPI
-PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
-
-MAINTAINER= wen@FreeBSD.org
-COMMENT= Phylogenetic computing library
-WWW= http://packages.python.org/DendroPy/
-
-LICENSE= BSD3CLAUSE
-
-DEPRECATED= Depends on expired devel/py-pytest-runner
-EXPIRATION_DATE=2025-03-31
-
-BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pip>0:devel/py-pip@${PY_FLAVOR} \
- ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} \
- ${PYTHON_PKGNAMEPREFIX}pytest-runner>0:devel/py-pytest-runner@${PY_FLAVOR}
-
-USES= python
-USE_PYTHON= distutils autoplist
-
-.include <bsd.port.mk>
diff --git a/science/py-DendroPy/distinfo b/science/py-DendroPy/distinfo
deleted file mode 100644
index 0db0c8397580..000000000000
--- a/science/py-DendroPy/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-TIMESTAMP = 1717397726
-SHA256 (DendroPy-5.0.1.tar.gz) = f2815e7649a6fe2924ff3fdf00a660c948dc6f3316e303b8b022f74cc75ca42e
-SIZE (DendroPy-5.0.1.tar.gz) = 395057
diff --git a/science/py-DendroPy/pkg-descr b/science/py-DendroPy/pkg-descr
deleted file mode 100644
index 7a507db67459..000000000000
--- a/science/py-DendroPy/pkg-descr
+++ /dev/null
@@ -1,2 +0,0 @@
-py-DendroPy is a python library for phylogenetic scripting,
-simulation, data processing and manipulation.
diff --git a/science/py-DendroPy/pkg-message b/science/py-DendroPy/pkg-message
deleted file mode 100644
index 1f71993d6f73..000000000000
--- a/science/py-DendroPy/pkg-message
+++ /dev/null
@@ -1,11 +0,0 @@
-[
-{ type: install
- message: <<EOM
-If you use this library either in whole or in part in your analysis, or
-use any code derived from it, please cite it as:
-
- Sukumaran, J. and Mark T. Holder. 2010. DendroPy: A Python library
- for phylogenetic computing. Bioinformatics 26: 1569-1571.
-EOM
-}
-]