git: 7bc347cd267e - main - biology/iqtree: Update to 3.0.1
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Date: Mon, 15 Dec 2025 03:45:37 UTC
The branch main has been updated by jrm:
URL: https://cgit.FreeBSD.org/ports/commit/?id=7bc347cd267e0e4627158e8475d926460fd8496b
commit 7bc347cd267e0e4627158e8475d926460fd8496b
Author: Joseph Mingrone <jrm@FreeBSD.org>
AuthorDate: 2025-12-15 03:38:02 +0000
Commit: Joseph Mingrone <jrm@FreeBSD.org>
CommitDate: 2025-12-15 03:45:01 +0000
biology/iqtree: Update to 3.0.1
Release notes: https://github.com/iqtree/iqtree3/releases/tag/v3.0.1
Sponsored by: The FreeBSD Foundation
---
biology/iqtree/Makefile | 9 ++++-----
biology/iqtree/distinfo | 10 +++++-----
2 files changed, 9 insertions(+), 10 deletions(-)
diff --git a/biology/iqtree/Makefile b/biology/iqtree/Makefile
index 6d4837298edc..af11d67a7c5a 100644
--- a/biology/iqtree/Makefile
+++ b/biology/iqtree/Makefile
@@ -1,7 +1,6 @@
PORTNAME= iqtree
DISTVERSIONPREFIX= v
-DISTVERSION= 2.4.0
-PORTREVISION= 3
+DISTVERSION= 3.0.1
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org
@@ -20,9 +19,9 @@ LIB_DEPENDS= libboost_filesystem.so:devel/boost-libs
USES= cmake eigen:3
USE_GITHUB= yes
-GH_PROJECT= iqtree2
+GH_PROJECT= iqtree3
GH_TUPLE= tothuhien:lsd2:c61110f3a4fa05325b45c97b2134792ff9d55d4c:tothuhien/lsd2 \
- iqtree:cmaple:3946f47731699573ed2268e00aa7996a3458d4eb:iqtree/cmaple
+ iqtree:cmaple:29df93e77b7ad159b19e8cdd8150545baa1221ae:iqtree/cmaple
PLIST_FILES= bin/iqtree
PORTEXAMPLES= custom_distributions.txt example.cf example.nex example.phy \
@@ -31,7 +30,7 @@ PORTEXAMPLES= custom_distributions.txt example.cf example.nex example.phy \
OPTIONS_DEFINE= EXAMPLES
do-install:
- ${INSTALL_PROGRAM} ${BUILD_WRKSRC}/iqtree2 ${STAGEDIR}${PREFIX}/bin/iqtree
+ ${INSTALL_PROGRAM} ${BUILD_WRKSRC}/iqtree3 ${STAGEDIR}${PREFIX}/bin/iqtree
do-install-EXAMPLES-on:
@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
diff --git a/biology/iqtree/distinfo b/biology/iqtree/distinfo
index ae72ac55ee39..f42a38d7c5f0 100644
--- a/biology/iqtree/distinfo
+++ b/biology/iqtree/distinfo
@@ -1,7 +1,7 @@
-TIMESTAMP = 1739123157
-SHA256 (iqtree-iqtree2-v2.4.0_GH0.tar.gz) = 06a3351de0ed3c44a3e197e94a5d0cc3de7359c0be79eab1f41fb83459234619
-SIZE (iqtree-iqtree2-v2.4.0_GH0.tar.gz) = 5524827
+TIMESTAMP = 1765767206
+SHA256 (iqtree-iqtree3-v3.0.1_GH0.tar.gz) = 2daff8eaa24faaeac3dee9ac63af9fd7b79cc94cf7031671f0068b051b12c55f
+SIZE (iqtree-iqtree3-v3.0.1_GH0.tar.gz) = 5172154
SHA256 (tothuhien-lsd2-c61110f3a4fa05325b45c97b2134792ff9d55d4c_GH0.tar.gz) = 9bbeaa0f8f35783c1d8dec74df6c93a804dbca808fa04484f9123de4e7258b53
SIZE (tothuhien-lsd2-c61110f3a4fa05325b45c97b2134792ff9d55d4c_GH0.tar.gz) = 1529381
-SHA256 (iqtree-cmaple-3946f47731699573ed2268e00aa7996a3458d4eb_GH0.tar.gz) = 712016835e40c26c1e69529fca1bec46a7102ede3775e1b4b6589c4b6074410a
-SIZE (iqtree-cmaple-3946f47731699573ed2268e00aa7996a3458d4eb_GH0.tar.gz) = 4806755
+SHA256 (iqtree-cmaple-29df93e77b7ad159b19e8cdd8150545baa1221ae_GH0.tar.gz) = f8b5115823614b4c710a13ded1b38b59953c9f3127ced46246d1a4b1db026e37
+SIZE (iqtree-cmaple-29df93e77b7ad159b19e8cdd8150545baa1221ae_GH0.tar.gz) = 4807064