From nobody Wed Apr 30 11:11:43 2025 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4ZnZJH6B4Dz5vGv8; Wed, 30 Apr 2025 11:11:43 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R11" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4ZnZJH4sZtz3WQH; Wed, 30 Apr 2025 11:11:43 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1746011503; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=kPuNbSy0M1X5m0K9A7x2Op9IF9ONAdLgbO1UbtvZlSo=; b=Fpw1KQbi5njtmGtYUjSIEjL0tcVWCo3xp/AmVcjIaK2yTSOpGbqaeXtmGSJaiOb8pijNGs tV3k/y69QCwJCGZkG2hnUbFJimwLOrrwCZNAkx39qTX6Mx3/Hc0RnmnMJZe4GpDz1HgZEx gKFXxmJN3/xoB4avIo/AxUqFKGaeuMea0niGtN7TU0hPEWGypoWemu1DVTlUbf+mIhVitY C5yH7iRV1wQHuJILGPsrnHmDgFOUsTMa05Nw053l0FVyOqAUfWEzEbR19vwpBd2aHswPOA JGm138ppZCFu4E0v7t8PjkRaDw+y9pqTfThNr3kcUOmTInXe9mMtihswavoNkw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1746011503; a=rsa-sha256; cv=none; b=G9CufM3KGk2rnyPHn1ei7uOBJbXdGYDBF6SqWFoK2UP41Jh1wGfcWgQP2sysA8NssO3ZqY awBMEQVoyAq11lv9sZE63WRK3IZMrYJ85KxHxbWcqOiPw4h9lOYjXlSy/O5wFV1vivO4lF zUNIQBX2frswcQMmj6PgM6hsNm2usWqwmkGrYZowiGkBXdhUz0nkgNQQOfQ0Kjy/WCRfU8 bGzUPqyaoUYyfARA/N0dToAievZCIESwgLUCXAcWyyzSQQjNGm1OjLD3cbPG4Hwpw3f05F TaMJnLZq6x6/lgNBkum2nrAm7cYfmtuUBPsaXF50JDgPRXazVXARToJ63E6Xnw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1746011503; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=kPuNbSy0M1X5m0K9A7x2Op9IF9ONAdLgbO1UbtvZlSo=; b=FWG8N0YPxyr8Re4pxt+i9JCl0KS2la+62OunX0wjTijpPrjUs8CQZqCzb1Kuwls11+fqND I5tLvJDiLUVSQFm6/MhAoOm1TWEZ1jNL+6CJW0+++n9zYKRSru90Xkk8buLUZkuwNpIaO2 g4ykACo1p3DTw+6svBClz/UGsnqSwLinRG2xjI8GLzkA30BhDRL/GJkAItqS+lMOrTJUrw Us5JIms8VPDRIIkY289piL1/JRTN0WJBupEu2+n6vc3FsmvUz2wYDq6SUlHe4NuTAvmsGx 9GQPDY5HQ/FPJ0kliz8fwP/VPAWMyLsocZIc79ZyZLHvIpQmSugNRjdAKQSC8A== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4ZnZJH4QyBz13T1; Wed, 30 Apr 2025 11:11:43 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.18.1/8.18.1) with ESMTP id 53UBBhIY001193; Wed, 30 Apr 2025 11:11:43 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.18.1/8.18.1/Submit) id 53UBBhcW001190; Wed, 30 Apr 2025 11:11:43 GMT (envelope-from git) Date: Wed, 30 Apr 2025 11:11:43 GMT Message-Id: <202504301111.53UBBhcW001190@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: b5fed385507c - main - biology/fastq-trim: Update to 0.1.4 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: b5fed385507cb7921c4fb042c254c0c3cd56dcd4 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=b5fed385507cb7921c4fb042c254c0c3cd56dcd4 commit b5fed385507cb7921c4fb042c254c0c3cd56dcd4 Author: Jason W. Bacon AuthorDate: 2025-04-30 11:11:14 +0000 Commit: Jason W. Bacon CommitDate: 2025-04-30 11:11:14 +0000 biology/fastq-trim: Update to 0.1.4 Add automatic 5' quality trimming Changes: https://github.com/auerlab/fastq-trim/releases --- biology/fastq-trim/Makefile | 11 ++++------- biology/fastq-trim/distinfo | 6 +++--- 2 files changed, 7 insertions(+), 10 deletions(-) diff --git a/biology/fastq-trim/Makefile b/biology/fastq-trim/Makefile index 1665ae11e1f1..37ca6af65f98 100644 --- a/biology/fastq-trim/Makefile +++ b/biology/fastq-trim/Makefile @@ -1,6 +1,5 @@ PORTNAME= fastq-trim -DISTVERSION= 0.1.3 -PORTREVISION= 1 +DISTVERSION= 0.1.4 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -10,15 +9,13 @@ WWW= https://github.com/outpaddling/Fastq-trim LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -LIB_DEPENDS= libbiolibc.so:biology/biolibc libxtend.so:devel/libxtend +BUILD_DEPENDS= biolibc>=0.2.6.10:biology/biolibc +LIB_DEPENDS= libxtend.so:devel/libxtend libbiolibc.so:biology/biolibc USE_GITHUB= yes GH_ACCOUNT= outpaddling -MAKE_ENV= VERSION=${PORTVERSION} MANPREFIX=${PREFIX}/share - -pre-build: - (cd ${WRKSRC} && ${MAKE} LOCALBASE=${LOCALBASE} depend) +MAKE_ARGS= MANPREFIX=${PREFIX}/share VERSION=${PORTVERSION} .include diff --git a/biology/fastq-trim/distinfo b/biology/fastq-trim/distinfo index ab3a1f310215..e477fb4ea0e1 100644 --- a/biology/fastq-trim/distinfo +++ b/biology/fastq-trim/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1698152145 -SHA256 (outpaddling-fastq-trim-0.1.3_GH0.tar.gz) = ae40371ee7898308fef5eb20018bb5a8f5022e67307eccfac3d23084cdc0a093 -SIZE (outpaddling-fastq-trim-0.1.3_GH0.tar.gz) = 30596 +TIMESTAMP = 1745867331 +SHA256 (outpaddling-fastq-trim-0.1.4_GH0.tar.gz) = e31cdccdf0e68f68142917fffaceb9e814b3f217382c2e0f3663a6e1c7a13bb6 +SIZE (outpaddling-fastq-trim-0.1.4_GH0.tar.gz) = 29825