git: 0097ef9a2cad - main - biology/{,py-}libsedml: update 2.0.32 → 2.0.33
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Date: Thu, 24 Apr 2025 07:33:45 UTC
The branch main has been updated by yuri:
URL: https://cgit.FreeBSD.org/ports/commit/?id=0097ef9a2cada42a49e4f79f5d8f5479dff862ff
commit 0097ef9a2cada42a49e4f79f5d8f5479dff862ff
Author: Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2025-04-24 06:30:30 +0000
Commit: Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2025-04-24 07:33:39 +0000
biology/{,py-}libsedml: update 2.0.32 → 2.0.33
Reported by: portscout
---
biology/libsedml/Makefile | 9 +++++++--
biology/libsedml/distinfo | 6 +++---
biology/libsedml/pkg-plist | 2 +-
biology/py-libsedml/Makefile | 2 +-
biology/py-libsedml/distinfo | 6 +++---
biology/py-libsedml/files/patch-CMakeLists.txt | 13 +------------
6 files changed, 16 insertions(+), 22 deletions(-)
diff --git a/biology/libsedml/Makefile b/biology/libsedml/Makefile
index c979cd8bc72f..cb2c3d8df493 100644
--- a/biology/libsedml/Makefile
+++ b/biology/libsedml/Makefile
@@ -1,6 +1,6 @@
PORTNAME= libsedml
DISTVERSIONPREFIX= v
-DISTVERSION= 2.0.32
+DISTVERSION= 2.0.33
CATEGORIES= biology devel
MAINTAINER= yuri@FreeBSD.org
@@ -15,7 +15,7 @@ BUILD_DEPENDS= libsbml>0:biology/libsbml \
RUN_DEPENDS= libsbml>0:biology/libsbml \
libnuml>0:biology/libnuml # when static lib libnuml.a is fixed these should be run-time dependency
-USES= cmake compiler:c++11-lang gnome
+USES= cmake:testing compiler:c++11-lang gnome
USE_GNOME= libxml2
USE_LDCONFIG= yes
@@ -23,6 +23,9 @@ USE_GITHUB= yes
GH_ACCOUNT= fbergmann
GH_PROJECT= libSEDML
+CMAKE_OFF= BUILD_TESTS
+CMAKE_TESTING_ON= BUILD_TESTS
+
post-install:
# no need to install LICENSE, README, VERSION
@${RM} -r ${STAGEDIR}${DATADIR}
@@ -31,4 +34,6 @@ post-install:
# the project builds static libs with -fPIC, see https://github.com/fbergmann/libSEDML/issues/155
+# tests as of 2.0.33: All tests passed (351 assertions in 33 test cases)
+
.include <bsd.port.mk>
diff --git a/biology/libsedml/distinfo b/biology/libsedml/distinfo
index 7f650a78b96f..2740d95dfdbb 100644
--- a/biology/libsedml/distinfo
+++ b/biology/libsedml/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1654751397
-SHA256 (fbergmann-libSEDML-v2.0.32_GH0.tar.gz) = 95f0781c19e73bb86618cce1678f4238f3cc11abe070b49f2a25e869071b8069
-SIZE (fbergmann-libSEDML-v2.0.32_GH0.tar.gz) = 966584
+TIMESTAMP = 1745471328
+SHA256 (fbergmann-libSEDML-v2.0.33_GH0.tar.gz) = a3f69ecb5dc1084343d4de5dc0990bdd9def2f7eb819986015d33ca9735dbe76
+SIZE (fbergmann-libSEDML-v2.0.33_GH0.tar.gz) = 1006915
diff --git a/biology/libsedml/pkg-plist b/biology/libsedml/pkg-plist
index eca7bc710ba9..ab1d1ee629f9 100644
--- a/biology/libsedml/pkg-plist
+++ b/biology/libsedml/pkg-plist
@@ -116,4 +116,4 @@ lib/cmake/sedml-targets.cmake
lib/libsedml-static.a
lib/libsedml.so
lib/libsedml.so.2
-lib/libsedml.so.2.0.32
+lib/libsedml.so.2.0.33
diff --git a/biology/py-libsedml/Makefile b/biology/py-libsedml/Makefile
index 6b8e59cf0a3e..8e56763ea40b 100644
--- a/biology/py-libsedml/Makefile
+++ b/biology/py-libsedml/Makefile
@@ -1,6 +1,6 @@
PORTNAME= libsedml
DISTVERSIONPREFIX= v
-DISTVERSION= 2.0.32
+DISTVERSION= 2.0.33
CATEGORIES= biology devel
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/biology/py-libsedml/distinfo b/biology/py-libsedml/distinfo
index 7bc4e026e156..529392d3d0ac 100644
--- a/biology/py-libsedml/distinfo
+++ b/biology/py-libsedml/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1654751643
-SHA256 (fbergmann-libSEDML-v2.0.32_GH0.tar.gz) = 95f0781c19e73bb86618cce1678f4238f3cc11abe070b49f2a25e869071b8069
-SIZE (fbergmann-libSEDML-v2.0.32_GH0.tar.gz) = 966584
+TIMESTAMP = 1745471845
+SHA256 (fbergmann-libSEDML-v2.0.33_GH0.tar.gz) = a3f69ecb5dc1084343d4de5dc0990bdd9def2f7eb819986015d33ca9735dbe76
+SIZE (fbergmann-libSEDML-v2.0.33_GH0.tar.gz) = 1006915
diff --git a/biology/py-libsedml/files/patch-CMakeLists.txt b/biology/py-libsedml/files/patch-CMakeLists.txt
index 1ad8d3a30828..576ed26d7b4c 100644
--- a/biology/py-libsedml/files/patch-CMakeLists.txt
+++ b/biology/py-libsedml/files/patch-CMakeLists.txt
@@ -1,16 +1,5 @@
---- CMakeLists.txt.orig 2022-06-07 11:34:09 UTC
+--- CMakeLists.txt.orig 2025-04-24 05:19:57 UTC
+++ CMakeLists.txt
-@@ -37,8 +37,8 @@ endif(LIBSEDML_REMOVE_WRAPPERS)
-
-
- set(SWIG_EXTRA_FLAGS -DSWIGEXPORT
-- -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE
-- -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE
-+ -DLIBSBML_CPP_NAMESPACE_BEGIN= -DLIBSBML_CPP_NAMESPACE_END= -DLIBSBML_CPP_NAMESPACE_QUALIFIER= -DLIBSBML_CPP_NAMESPACE_USE=
-+ -DLIBNUML_CPP_NAMESPACE_BEGIN= -DLIBNUML_CPP_NAMESPACE_END= -DLIBNUML_CPP_NAMESPACE_QUALIFIER= -DLIBNUML_CPP_NAMESPACE_USE=
- )
- if(NOT UNIX)
- set(SWIG_EXTRA_FLAGS ${SWIG_EXTRA_FLAGS} -DSWIGWIN -DSWIG_CSHARP_NO_WSTRING_HELPER )
@@ -49,6 +49,7 @@ ADD_CUSTOM_COMMAND(
OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/libsedml_wrap.cpp
COMMAND "${SWIG_EXECUTABLE}"