git: cc15cab2da4c - main - biology/fasda-utils: Fast and simple differential analysis extras

The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=cc15cab2da4cd9463feff37ef38e71f123eb7caa

commit cc15cab2da4cd9463feff37ef38e71f123eb7caa
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2025-04-06 11:27:20 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2025-04-06 11:27:20 +0000

    biology/fasda-utils: Fast and simple differential analysis extras
    
    FASDA aims to provide a fast and simple differential analysis tool
    that just works and does not require any knowledge beyond basic Unix
    command-line skills. The code is written entirely in C to maximize
    efficiency and portability, and to provide a simple command-line user
    interface.
    
    FASDA-utils is a collection of optional companion programs and
    scripts.  They are separated from the main FASDA distribution in order
    to keep FASDA packages minimal.
---
 biology/Makefile              |  1 +
 biology/fasda-utils/Makefile  | 28 ++++++++++++++++++++++++++++
 biology/fasda-utils/distinfo  |  3 +++
 biology/fasda-utils/pkg-descr |  9 +++++++++
 4 files changed, 41 insertions(+)

diff --git a/biology/Makefile b/biology/Makefile
index 45b22213c546..ea85f35b064d 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -52,6 +52,7 @@
     SUBDIR += erminej
     SUBDIR += exonerate
     SUBDIR += fasda
+    SUBDIR += fasda-utils
     SUBDIR += fasta
     SUBDIR += fasta3
     SUBDIR += fastahack
diff --git a/biology/fasda-utils/Makefile b/biology/fasda-utils/Makefile
new file mode 100644
index 000000000000..599b34101d8b
--- /dev/null
+++ b/biology/fasda-utils/Makefile
@@ -0,0 +1,28 @@
+PORTNAME=	fasda-utils
+DISTVERSION=	0.1.0
+CATEGORIES=	biology
+
+MAINTAINER=	jwb@FreeBSD.org
+COMMENT=	Fast and simple differential analysis extras
+WWW=		https://github.com/auerlab/fasda-utils
+
+LICENSE=	BSD2CLAUSE
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}seaborn>=0:math/py-seaborn@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}fastcluster>=0:math/py-fastcluster@${PY_FLAVOR}
+
+USES=		python:run shebangfix
+USE_GITHUB=	yes
+
+SHEBANG_FILES=	Scripts/heatmap.py
+
+GH_ACCOUNT=	auerlab
+
+MAKE_ARGS=	MANPREFIX=${PREFIX}/share VERSION=${PORTVERSION}
+
+PLIST_FILES=	libexec/fasda/heatmap \
+		libexec/fasda/heatmap.py \
+		share/man/man1/fasda-heatmap.1.gz
+
+.include <bsd.port.mk>
diff --git a/biology/fasda-utils/distinfo b/biology/fasda-utils/distinfo
new file mode 100644
index 000000000000..ab7f029fb6fc
--- /dev/null
+++ b/biology/fasda-utils/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1743885730
+SHA256 (auerlab-fasda-utils-0.1.0_GH0.tar.gz) = bd135f8faec72aafe5f57df480f14e76a5b3b8f3814426c9bc350ed4166e1924
+SIZE (auerlab-fasda-utils-0.1.0_GH0.tar.gz) = 4891
diff --git a/biology/fasda-utils/pkg-descr b/biology/fasda-utils/pkg-descr
new file mode 100644
index 000000000000..11919f2f64b0
--- /dev/null
+++ b/biology/fasda-utils/pkg-descr
@@ -0,0 +1,9 @@
+FASDA aims to provide a fast and simple differential analysis tool
+that just works and does not require any knowledge beyond basic Unix
+command-line skills. The code is written entirely in C to maximize
+efficiency and portability, and to provide a simple command-line user
+interface.
+
+FASDA-utils is a collection of optional companion programs and
+scripts.  They are separated from the main FASDA distribution in order
+to keep FASDA packages minimal.