git: 9f5d0a66ddb8 - main - biology/py-scikit-bio: Update 0.5.7 → 0.5.7

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=9f5d0a66ddb8a315dd8ef92754d90ad1ddddf8f8

commit 9f5d0a66ddb8a315dd8ef92754d90ad1ddddf8f8
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2023-03-20 06:05:44 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2023-03-20 06:05:44 +0000

    biology/py-scikit-bio: Update 0.5.7 → 0.5.7
    
    Reported by:    portscout
---
 biology/py-scikit-bio/Makefile | 12 +++++++++---
 1 file changed, 9 insertions(+), 3 deletions(-)

diff --git a/biology/py-scikit-bio/Makefile b/biology/py-scikit-bio/Makefile
index c2d78cbcac7b..2d1d90692cca 100644
--- a/biology/py-scikit-bio/Makefile
+++ b/biology/py-scikit-bio/Makefile
@@ -1,6 +1,5 @@
 PORTNAME=	scikit-bio
-PORTVERSION=	0.5.7
-PORTREVISION=	2
+DISTVERSION=	0.5.7
 CATEGORIES=	biology education python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -29,7 +28,9 @@ RUN_DEPENDS=	${PYNUMPY} \
 		${PYTHON_PKGNAMEPREFIX}scipy>=1.3.0:science/py-scipy@${PY_FLAVOR}
 
 USES=		python:3.7+
-USE_PYTHON=	distutils cython autoplist
+USE_PYTHON=	distutils cython autoplist pytest # tests fail to run, see https://github.com/biocore/scikit-bio/issues/1846
+
+TEST_ENV=	${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
 
 CONFLICTS_INSTALL=	${PYTHON_PKGNAMEPREFIX}ddtrace # lib/python3.8/site-packages/benchmarks/__init__.py
 
@@ -40,4 +41,9 @@ CFLAGS+=	-msse2 # workaround for https://github.com/biocore/scikit-bio/issues/17
 CXXFLAGS+=	-msse2
 .endif
 
+post-install:
+	@${STRIP_CMD} \
+		${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*${PYTHON_EXT_SUFFIX}.so \
+		${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*/*${PYTHON_EXT_SUFFIX}.so
+
 .include <bsd.port.mk>