git: 5051eb68b916 - main - biology/R-cran-BiocManager: New port
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Date: Fri, 15 Dec 2023 12:55:57 UTC
The branch main has been updated by bofh:
URL: https://cgit.FreeBSD.org/ports/commit/?id=5051eb68b9167a5e565a8e24aaa7989f0ea51196
commit 5051eb68b9167a5e565a8e24aaa7989f0ea51196
Author: Muhammad Moinur Rahman <bofh@FreeBSD.org>
AuthorDate: 2023-12-15 10:30:16 +0000
Commit: Muhammad Moinur Rahman <bofh@FreeBSD.org>
CommitDate: 2023-12-15 12:55:43 +0000
biology/R-cran-BiocManager: New port
The BiocManager package, as the modern successor package to
BiocInstaller, allows users to install and manage packages from the
Bioconductor project. Bioconductor focuses on the statistical analysis
and comprehension of high-throughput genomic data.
WWW: https://bioconductor.github.io/BiocManager/
---
biology/Makefile | 1 +
biology/R-cran-BiocManager/Makefile | 14 ++++++++++++++
biology/R-cran-BiocManager/distinfo | 3 +++
biology/R-cran-BiocManager/pkg-descr | 4 ++++
4 files changed, 22 insertions(+)
diff --git a/biology/Makefile b/biology/Makefile
index dc020b1fd61e..cbf07586368b 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -1,5 +1,6 @@
COMMENT = Biology
+ SUBDIR += R-cran-BiocManager
SUBDIR += abyss
SUBDIR += ad2vcf
SUBDIR += artemis
diff --git a/biology/R-cran-BiocManager/Makefile b/biology/R-cran-BiocManager/Makefile
new file mode 100644
index 000000000000..2ecab572d8e4
--- /dev/null
+++ b/biology/R-cran-BiocManager/Makefile
@@ -0,0 +1,14 @@
+PORTNAME= BiocManager
+PORTVERSION= 1.30.22
+CATEGORIES= biology
+DISTNAME= ${PORTNAME}_${PORTVERSION}
+
+MAINTAINER= bofh@FreeBSD.org
+COMMENT= Convenient tool to install and update Bioconductor packages
+WWW= https://cran.r-project.org/web/packages/BiocManager/
+
+LICENSE= ART20
+
+USES= cran:auto-plist,compiles
+
+.include <bsd.port.mk>
diff --git a/biology/R-cran-BiocManager/distinfo b/biology/R-cran-BiocManager/distinfo
new file mode 100644
index 000000000000..e007f57ce45d
--- /dev/null
+++ b/biology/R-cran-BiocManager/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1702634634
+SHA256 (BiocManager_1.30.22.tar.gz) = 5389c9c0d6562b0757659fb8262ab51b48225c4ba7e9acd4f5e7c0049735e835
+SIZE (BiocManager_1.30.22.tar.gz) = 582690
diff --git a/biology/R-cran-BiocManager/pkg-descr b/biology/R-cran-BiocManager/pkg-descr
new file mode 100644
index 000000000000..bd8a1376348c
--- /dev/null
+++ b/biology/R-cran-BiocManager/pkg-descr
@@ -0,0 +1,4 @@
+The BiocManager package, as the modern successor package to BiocInstaller,
+allows users to install and manage packages from the Bioconductor project.
+Bioconductor focuses on the statistical analysis and comprehension of
+high-throughput genomic data.