git: 56c253241077 - main - math/gap: Update 4.12.0 -> 4.12.1

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From: Yuri Victorovich <yuri_at_FreeBSD.org>
Date: Sun, 30 Oct 2022 23:57:01 UTC
The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=56c253241077a1550ff90325c47e3d03d4e7cd81

commit 56c253241077a1550ff90325c47e3d03d4e7cd81
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2022-10-30 23:56:24 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2022-10-30 23:56:59 +0000

    math/gap: Update 4.12.0 -> 4.12.1
---
 math/gap/Makefile  |  19 ++-
 math/gap/distinfo  |   8 +-
 math/gap/pkg-plist | 342 ++++++++++++++++++++++++++++++++---------------------
 3 files changed, 222 insertions(+), 147 deletions(-)

diff --git a/math/gap/Makefile b/math/gap/Makefile
index 301f685db884..676f11eb366c 100644
--- a/math/gap/Makefile
+++ b/math/gap/Makefile
@@ -1,21 +1,14 @@
 PORTNAME=	gap
-DISTVERSION=	4.12.0
-PORTREVISION=	1
+DISTVERSION=	4.12.1
 CATEGORIES=	math
 MASTER_SITES=	https://github.com/gap-system/gap/releases/download/v${DISTVERSION}/
 
-PATCH_SITES=	https://github.com/gap-system/gap/commit/
-PATCHFILES=	adc76841750e3b0d39edf1315b5258bae119a928.diff:-p1 # Don't attempt to install the 'dev' manual, see https://github.com/gap-system/gap/pull/5091
-
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	System for computational discrete algebra
 WWW=		https://www.gap-system.org/
 
 LICENSE=	GPLv2+
 
-BROKEN_aarch64=		fails to link: undefined reference to SyAllocBags
-BROKEN_riscv64=		fails to link: undefined reference to SyAllocBags
-
 BUILD_DEPENDS=	bash:shells/bash
 LIB_DEPENDS=	libgmp.so:math/gmp
 
@@ -52,9 +45,15 @@ post-install:
 	# install packages
 	cd ${WRKSRC} && ${COPYTREE_SHARE} pkg ${STAGEDIR}${DATADIR}
 	# remove redundant files
-	${RM} ${STAGEDIR}${DATADIR}/pkg/patternclass/lib/.DS_Store
+	@${RM} \
+		${STAGEDIR}${DATADIR}/pkg/patternclass/lib/.DS_Store \
+		${STAGEDIR}${DATADIR}/pkg/atlasrep/gap/utils.gi.new \
+		${STAGEDIR}${DATADIR}/pkg/*/*/pkgconfig.h.in \
+		${STAGEDIR}${DATADIR}/pkg/*/examples/.gitkeep
+	# remove empty directories
+	@${FIND} ${STAGEDIR}${PREFIX} -type d -empty -delete
 	# strip binary
-	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libgap.so.8.0.0
+	@${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libgap.so.8.0.0
 
 do-test:
 	@cd ${WRKSRC} && ./gap ${FILESDIR}/test.g
diff --git a/math/gap/distinfo b/math/gap/distinfo
index 3dfab316d3af..91186cbb785f 100644
--- a/math/gap/distinfo
+++ b/math/gap/distinfo
@@ -1,5 +1,3 @@
-TIMESTAMP = 1665179858
-SHA256 (gap-4.12.0.tar.gz) = 6005d0c0316fe8803d84681f30be64eace83a9542f975f5cb3dedfadd4391849
-SIZE (gap-4.12.0.tar.gz) = 505913244
-SHA256 (adc76841750e3b0d39edf1315b5258bae119a928.diff) = 1bd89ecb3a3914d5092a531b1430aaa80c9abdab08a7bd38723bcb29f0f9d499
-SIZE (adc76841750e3b0d39edf1315b5258bae119a928.diff) = 652
+TIMESTAMP = 1667169825
+SHA256 (gap-4.12.1.tar.gz) = f9ebef11ee31b210ce36e3c70960742b4e253282bbd5270adc9324273c92b016
+SIZE (gap-4.12.1.tar.gz) = 504040985
diff --git a/math/gap/pkg-plist b/math/gap/pkg-plist
index 04b371733582..fcb293a178b6 100644
--- a/math/gap/pkg-plist
+++ b/math/gap/pkg-plist
@@ -3017,7 +3017,6 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/browse/doc/manual.lab
 %%DATADIR%%/pkg/browse/doc/manual.pdf
 %%DATADIR%%/pkg/browse/doc/manual.six
-%%DATADIR%%/pkg/browse/doc/manualbib.xml.bib
 %%DATADIR%%/pkg/browse/doc/nocolorprompt.css
 %%DATADIR%%/pkg/browse/doc/ragged.css
 %%DATADIR%%/pkg/browse/doc/rainbow.js
@@ -3249,6 +3248,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/cap/makefile
 %%DATADIR%%/pkg/cap/read.g
 %%DATADIR%%/pkg/cap/tst/100_LoadPackage.tst
+%%DATADIR%%/pkg/cap/tst/ListWithKeys.tst
 %%DATADIR%%/pkg/cap/tst/cap01.tst
 %%DATADIR%%/pkg/cap/tst/cap02.tst
 %%DATADIR%%/pkg/cap/tst/cap03.tst
@@ -4216,6 +4216,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/crypting/doc/_AutoDocMainFile.xml
 %%DATADIR%%/pkg/crypting/doc/_Chapter_CryptinG_Functions.xml
 %%DATADIR%%/pkg/crypting/doc/_Chunks.xml
+%%DATADIR%%/pkg/crypting/doc/_entities.xml
 %%DATADIR%%/pkg/crypting/doc/chap0.html
 %%DATADIR%%/pkg/crypting/doc/chap0.txt
 %%DATADIR%%/pkg/crypting/doc/chap0_mj.html
@@ -4231,6 +4232,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/crypting/doc/lefttoc.css
 %%DATADIR%%/pkg/crypting/doc/manual.css
 %%DATADIR%%/pkg/crypting/doc/manual.js
+%%DATADIR%%/pkg/crypting/doc/manual.lab
 %%DATADIR%%/pkg/crypting/doc/manual.pdf
 %%DATADIR%%/pkg/crypting/doc/manual.six
 %%DATADIR%%/pkg/crypting/doc/nocolorprompt.css
@@ -4804,7 +4806,6 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/curlinterface/doc/toggless.js
 %%DATADIR%%/pkg/curlinterface/gap/curl.gd
 %%DATADIR%%/pkg/curlinterface/gap/curl.gi
-%%DATADIR%%/pkg/curlinterface/gen/pkgconfig.h.in
 %%DATADIR%%/pkg/curlinterface/init.g
 %%DATADIR%%/pkg/curlinterface/m4/find_gap.m4
 %%DATADIR%%/pkg/curlinterface/m4/libcurl.m4
@@ -5109,6 +5110,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/deepthought/doc/_Chapter_The_Deep_Thought_algorithm.xml
 %%DATADIR%%/pkg/deepthought/doc/_Chapter_Using_Deep_Thought_functions.xml
 %%DATADIR%%/pkg/deepthought/doc/_Chunks.xml
+%%DATADIR%%/pkg/deepthought/doc/_entities.xml
 %%DATADIR%%/pkg/deepthought/doc/chap0.html
 %%DATADIR%%/pkg/deepthought/doc/chap0.txt
 %%DATADIR%%/pkg/deepthought/doc/chap0_mj.html
@@ -6310,7 +6312,6 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/digraphs/cnf/ltmain.sh
 %%DATADIR%%/pkg/digraphs/cnf/ltmain.sh.bak
 %%DATADIR%%/pkg/digraphs/cnf/missing
-%%DATADIR%%/pkg/digraphs/cnf/pkgconfig.h.in
 %%DATADIR%%/pkg/digraphs/configure
 %%DATADIR%%/pkg/digraphs/configure.ac
 %%DATADIR%%/pkg/digraphs/configure.libtool.bak
@@ -6675,6 +6676,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/edim/tst/mat
 %%DATADIR%%/pkg/edim/tst/mat2
 %%DATADIR%%/pkg/edim/tst/test.g
+%%DATADIR%%/pkg/edim/tst/testall.g
 %%DATADIR%%/pkg/example/CHANGES
 %%DATADIR%%/pkg/example/LICENSE
 %%DATADIR%%/pkg/example/Makefile.in
@@ -6885,6 +6887,9 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/examplesforhomalg/read.g
 %%DATADIR%%/pkg/examplesforhomalg/tst/100_LoadPackage.tst
 %%DATADIR%%/pkg/examplesforhomalg/tst/150_LoadPackage.tst
+%%DATADIR%%/pkg/examplesforhomalg/tst/MAGMA.tst
+%%DATADIR%%/pkg/examplesforhomalg/tst/Maple.tst
+%%DATADIR%%/pkg/examplesforhomalg/tst/Singular.tst
 %%DATADIR%%/pkg/examplesforhomalg/tst/examplesforhomalg01.tst
 %%DATADIR%%/pkg/examplesforhomalg/tst/examplesforhomalg02.tst
 %%DATADIR%%/pkg/examplesforhomalg/tst/examplesforhomalg03.tst
@@ -9322,11 +9327,11 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/ferret/YAPB++/tests/test_simple_problem.cc
 %%DATADIR%%/pkg/ferret/YAPB++/tests/vec1.cc
 %%DATADIR%%/pkg/ferret/autogen.sh
-%%DATADIR%%/pkg/ferret/build.sh
 %%DATADIR%%/pkg/ferret/build_symmetry_detect.sh
 %%DATADIR%%/pkg/ferret/configure
 %%DATADIR%%/pkg/ferret/configure.ac
 %%DATADIR%%/pkg/ferret/configure.libtool.bak
+%%DATADIR%%/pkg/ferret/doc/_entities.xml
 %%DATADIR%%/pkg/ferret/doc/chap0.html
 %%DATADIR%%/pkg/ferret/doc/chap0.txt
 %%DATADIR%%/pkg/ferret/doc/chap0_mj.html
@@ -10552,6 +10557,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/forms/PackageInfo.g
 %%DATADIR%%/pkg/forms/README
 %%DATADIR%%/pkg/forms/coverage.sh
+%%DATADIR%%/pkg/forms/doc/_entities.xml
 %%DATADIR%%/pkg/forms/doc/chap0.html
 %%DATADIR%%/pkg/forms/doc/chap0.txt
 %%DATADIR%%/pkg/forms/doc/chap0_mj.html
@@ -11110,6 +11116,8 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/francy/doc/_Chapter_Francy_Menus.xml
 %%DATADIR%%/pkg/francy/doc/_Chapter_Francy_Messages.xml
 %%DATADIR%%/pkg/francy/doc/_Chapter_Francy_Util.xml
+%%DATADIR%%/pkg/francy/doc/_Chunks.xml
+%%DATADIR%%/pkg/francy/doc/_entities.xml
 %%DATADIR%%/pkg/francy/doc/chap0.html
 %%DATADIR%%/pkg/francy/doc/chap0.txt
 %%DATADIR%%/pkg/francy/doc/chap0_mj.html
@@ -11908,6 +11916,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/generalizedmorphismsforcap/doc/_Chapter_Serre_Quotients_Functors.xml
 %%DATADIR%%/pkg/generalizedmorphismsforcap/doc/_Chapter_Serre_Quotients_Subcategory.xml
 %%DATADIR%%/pkg/generalizedmorphismsforcap/doc/_Chunks.xml
+%%DATADIR%%/pkg/generalizedmorphismsforcap/doc/_entities.xml
 %%DATADIR%%/pkg/generalizedmorphismsforcap/doc/chap0.html
 %%DATADIR%%/pkg/generalizedmorphismsforcap/doc/chap0.txt
 %%DATADIR%%/pkg/generalizedmorphismsforcap/doc/chap0_mj.html
@@ -12003,6 +12012,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/genss/PackageInfo.g
 %%DATADIR%%/pkg/genss/README
 %%DATADIR%%/pkg/genss/TODO
+%%DATADIR%%/pkg/genss/doc/_entities.xml
 %%DATADIR%%/pkg/genss/doc/backtrack.xml
 %%DATADIR%%/pkg/genss/doc/chap0.html
 %%DATADIR%%/pkg/genss/doc/chap0.txt
@@ -12139,8 +12149,6 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/gradedmodules/examples/GlobalSections.g
 %%DATADIR%%/pkg/gradedmodules/examples/HilbertPolynomial.g
 %%DATADIR%%/pkg/gradedmodules/examples/HorrocksMumford.g
-%%DATADIR%%/pkg/gradedmodules/examples/MAGMA/update
-%%DATADIR%%/pkg/gradedmodules/examples/Macaulay2/update
 %%DATADIR%%/pkg/gradedmodules/examples/MainExample.g
 %%DATADIR%%/pkg/gradedmodules/examples/NonCohenMacaulayMonomialIdeal.g
 %%DATADIR%%/pkg/gradedmodules/examples/OmegaP3.g
@@ -12177,7 +12185,6 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/gradedmodules/examples/exEllSing_Section5.7.g
 %%DATADIR%%/pkg/gradedmodules/examples/exzug.g
 %%DATADIR%%/pkg/gradedmodules/examples/graded_Purity.g
-%%DATADIR%%/pkg/gradedmodules/examples/maple/update
 %%DATADIR%%/pkg/gradedmodules/examples/nongraded_Purity.g
 %%DATADIR%%/pkg/gradedmodules/gap/BasicFunctors.gd
 %%DATADIR%%/pkg/gradedmodules/gap/BasicFunctors.gi
@@ -12222,6 +12229,9 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/gradedmodules/read.g
 %%DATADIR%%/pkg/gradedmodules/tst/100_LoadPackage.tst
 %%DATADIR%%/pkg/gradedmodules/tst/150_LoadPackage.tst
+%%DATADIR%%/pkg/gradedmodules/tst/Macaulay2.tst
+%%DATADIR%%/pkg/gradedmodules/tst/Maple.tst
+%%DATADIR%%/pkg/gradedmodules/tst/Singular.tst
 %%DATADIR%%/pkg/gradedmodules/tst/gradedmodules01.tst
 %%DATADIR%%/pkg/gradedmodules/tst/gradedmodules02.tst
 %%DATADIR%%/pkg/gradedmodules/tst/gradedmodules03.tst
@@ -12782,13 +12792,12 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/guarana/tst/repsWerner/subs.g
 %%DATADIR%%/pkg/guarana/tst/smallexams.tst
 %%DATADIR%%/pkg/guarana/tst/testall.g
-%%DATADIR%%/pkg/guava/CHANGES.guava
-%%DATADIR%%/pkg/guava/COPYING.guava
-%%DATADIR%%/pkg/guava/HISTORY.guava
+%%DATADIR%%/pkg/guava/CHANGES
+%%DATADIR%%/pkg/guava/COPYING
+%%DATADIR%%/pkg/guava/HISTORY
 %%DATADIR%%/pkg/guava/Makefile.in
 %%DATADIR%%/pkg/guava/Makefile.in.c++20
 %%DATADIR%%/pkg/guava/PackageInfo.g
-%%DATADIR%%/pkg/guava/README.guava
 %%DATADIR%%/pkg/guava/README.md
 %%DATADIR%%/pkg/guava/autogen.sh
 %%DATADIR%%/pkg/guava/configure
@@ -13078,6 +13087,8 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/guava/tbl/upperbd2.g
 %%DATADIR%%/pkg/guava/tbl/upperbd3.g
 %%DATADIR%%/pkg/guava/tbl/upperbd4.g
+%%DATADIR%%/pkg/guava/tst/QCLDPCCodeFromGroup.tst
+%%DATADIR%%/pkg/guava/tst/bugfix.tst
 %%DATADIR%%/pkg/guava/tst/decoding.tst
 %%DATADIR%%/pkg/guava/tst/external.tst
 %%DATADIR%%/pkg/guava/tst/guava.tst
@@ -15992,8 +16003,6 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/intpic/tst/testall.g
 %%DATADIR%%/pkg/intpic/tst/testall.tst
 %%DATADIR%%/pkg/intpic/version
-%%DATADIR%%/pkg/io/.clang-format
-%%DATADIR%%/pkg/io/.mailmap
 %%DATADIR%%/pkg/io/CHANGES
 %%DATADIR%%/pkg/io/GPL
 %%DATADIR%%/pkg/io/LICENSE
@@ -16008,6 +16017,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/io/configure.ac
 %%DATADIR%%/pkg/io/configure.libtool.bak
 %%DATADIR%%/pkg/io/doc/IO.xml
+%%DATADIR%%/pkg/io/doc/_entities.xml
 %%DATADIR%%/pkg/io/doc/chap0.html
 %%DATADIR%%/pkg/io/doc/chap0.txt
 %%DATADIR%%/pkg/io/doc/chap0_mj.html
@@ -16094,7 +16104,6 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/io/gap/pickle.gi
 %%DATADIR%%/pkg/io/gap/realrandom.gd
 %%DATADIR%%/pkg/io/gap/realrandom.gi
-%%DATADIR%%/pkg/io/gen/pkgconfig.h.in
 %%DATADIR%%/pkg/io/init.g
 %%DATADIR%%/pkg/io/m4/find_gap.m4
 %%DATADIR%%/pkg/io/makedoc.g
@@ -19219,6 +19228,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/json/doc/_AutoDocMainFile.xml
 %%DATADIR%%/pkg/json/doc/_Chapter_GAP-JSON_mapping.xml
 %%DATADIR%%/pkg/json/doc/_Chunks.xml
+%%DATADIR%%/pkg/json/doc/_entities.xml
 %%DATADIR%%/pkg/json/doc/chap0.html
 %%DATADIR%%/pkg/json/doc/chap0.txt
 %%DATADIR%%/pkg/json/doc/chap0_mj.html
@@ -19546,7 +19556,6 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/kan/tst/manual/history.tst
 %%DATADIR%%/pkg/kan/tst/testall.g
 %%DATADIR%%/pkg/kan/tst/testing.g
-%%DATADIR%%/pkg/kbmag/.clang-format
 %%DATADIR%%/pkg/kbmag/CHANGES
 %%DATADIR%%/pkg/kbmag/LICENSE
 %%DATADIR%%/pkg/kbmag/Makefile.in
@@ -19555,6 +19564,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/kbmag/README.md
 %%DATADIR%%/pkg/kbmag/configure
 %%DATADIR%%/pkg/kbmag/configure.libtool.bak
+%%DATADIR%%/pkg/kbmag/doc/_entities.xml
 %%DATADIR%%/pkg/kbmag/doc/chap0.html
 %%DATADIR%%/pkg/kbmag/doc/chap0.txt
 %%DATADIR%%/pkg/kbmag/doc/chap0_mj.html
@@ -19584,6 +19594,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/kbmag/doc/lefttoc.css
 %%DATADIR%%/pkg/kbmag/doc/manual.css
 %%DATADIR%%/pkg/kbmag/doc/manual.js
+%%DATADIR%%/pkg/kbmag/doc/manual.lab
 %%DATADIR%%/pkg/kbmag/doc/manual.mst
 %%DATADIR%%/pkg/kbmag/doc/manual.pdf
 %%DATADIR%%/pkg/kbmag/doc/manual.six
@@ -20833,14 +20844,10 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/linearalgebraforcap/doc/toggless.css
 %%DATADIR%%/pkg/linearalgebraforcap/doc/toggless.js
 %%DATADIR%%/pkg/linearalgebraforcap/examples/Example.gi
-%%DATADIR%%/pkg/linearalgebraforcap/examples/MatrixCategoryAsAdditiveClosureOfRingAsCategory.g
 %%DATADIR%%/pkg/linearalgebraforcap/examples/SplitEpiSummand.g
-%%DATADIR%%/pkg/linearalgebraforcap/gap/CompilerLogic.gi
 %%DATADIR%%/pkg/linearalgebraforcap/gap/DerivedMethodsForMatrixCategories.gi
 %%DATADIR%%/pkg/linearalgebraforcap/gap/LinearAlgebraForCAP.gd
 %%DATADIR%%/pkg/linearalgebraforcap/gap/LinearAlgebraForCAP.gi
-%%DATADIR%%/pkg/linearalgebraforcap/gap/MatrixCategoryAsAdditiveClosureOfRingAsCategory.gd
-%%DATADIR%%/pkg/linearalgebraforcap/gap/MatrixCategoryAsAdditiveClosureOfRingAsCategory.gi
 %%DATADIR%%/pkg/linearalgebraforcap/gap/MatrixCategoryMorphism.gd
 %%DATADIR%%/pkg/linearalgebraforcap/gap/MatrixCategoryMorphism.gi
 %%DATADIR%%/pkg/linearalgebraforcap/gap/MatrixCategoryObject.gd
@@ -20858,7 +20865,6 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/linearalgebraforcap/tst/TensorCorrespondenceMatrixCategoryAndOpposite.tst
 %%DATADIR%%/pkg/linearalgebraforcap/tst/linearalgebraforcap01.tst
 %%DATADIR%%/pkg/linearalgebraforcap/tst/linearalgebraforcap02.tst
-%%DATADIR%%/pkg/linearalgebraforcap/tst/linearalgebraforcap03.tst
 %%DATADIR%%/pkg/linearalgebraforcap/tst/testall.g
 %%DATADIR%%/pkg/linearalgebraforcap/tst/testall_no_precompiled_code.g
 %%DATADIR%%/pkg/localizeringforhomalg/CHANGES
@@ -21596,16 +21602,18 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/majoranaalgebras/LICENSE
 %%DATADIR%%/pkg/majoranaalgebras/PackageInfo.g
 %%DATADIR%%/pkg/majoranaalgebras/README.md
-%%DATADIR%%/pkg/majoranaalgebras/_config.yml
-%%DATADIR%%/pkg/majoranaalgebras/cov.sh
 %%DATADIR%%/pkg/majoranaalgebras/doc/Intros.autodoc
 %%DATADIR%%/pkg/majoranaalgebras/doc/MajoranaAlgebras.xml
 %%DATADIR%%/pkg/majoranaalgebras/doc/_AutoDocMainFile.xml
 %%DATADIR%%/pkg/majoranaalgebras/doc/_Chapter_Functions_for_testing_Majorana_representations.xml
 %%DATADIR%%/pkg/majoranaalgebras/doc/_Chapter_Introduction.xml
 %%DATADIR%%/pkg/majoranaalgebras/doc/_Chapter_Majorana_representations.xml
+%%DATADIR%%/pkg/majoranaalgebras/doc/_Chapter_Orbital_Structures.xml
 %%DATADIR%%/pkg/majoranaalgebras/doc/_Chapter_Shapes_of_a_Majorana_representation.xml
+%%DATADIR%%/pkg/majoranaalgebras/doc/_Chapter_Signed_Permutations.xml
 %%DATADIR%%/pkg/majoranaalgebras/doc/_Chapter_funcs.xml
+%%DATADIR%%/pkg/majoranaalgebras/doc/_Chunks.xml
+%%DATADIR%%/pkg/majoranaalgebras/doc/_entities.xml
 %%DATADIR%%/pkg/majoranaalgebras/doc/chap0.html
 %%DATADIR%%/pkg/majoranaalgebras/doc/chap0.txt
 %%DATADIR%%/pkg/majoranaalgebras/doc/chap0_mj.html
@@ -21624,6 +21632,12 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/majoranaalgebras/doc/chap5.html
 %%DATADIR%%/pkg/majoranaalgebras/doc/chap5.txt
 %%DATADIR%%/pkg/majoranaalgebras/doc/chap5_mj.html
+%%DATADIR%%/pkg/majoranaalgebras/doc/chap6.html
+%%DATADIR%%/pkg/majoranaalgebras/doc/chap6.txt
+%%DATADIR%%/pkg/majoranaalgebras/doc/chap6_mj.html
+%%DATADIR%%/pkg/majoranaalgebras/doc/chap7.html
+%%DATADIR%%/pkg/majoranaalgebras/doc/chap7.txt
+%%DATADIR%%/pkg/majoranaalgebras/doc/chap7_mj.html
 %%DATADIR%%/pkg/majoranaalgebras/doc/chapInd.html
 %%DATADIR%%/pkg/majoranaalgebras/doc/chapInd.txt
 %%DATADIR%%/pkg/majoranaalgebras/doc/chapInd_mj.html
@@ -21631,6 +21645,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/majoranaalgebras/doc/lefttoc.css
 %%DATADIR%%/pkg/majoranaalgebras/doc/manual.css
 %%DATADIR%%/pkg/majoranaalgebras/doc/manual.js
+%%DATADIR%%/pkg/majoranaalgebras/doc/manual.lab
 %%DATADIR%%/pkg/majoranaalgebras/doc/manual.pdf
 %%DATADIR%%/pkg/majoranaalgebras/doc/manual.six
 %%DATADIR%%/pkg/majoranaalgebras/doc/nocolorprompt.css
@@ -21653,22 +21668,22 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/majoranaalgebras/gap/Miscellaneous.gi
 %%DATADIR%%/pkg/majoranaalgebras/gap/NClosed.gd
 %%DATADIR%%/pkg/majoranaalgebras/gap/NClosed.gi
+%%DATADIR%%/pkg/majoranaalgebras/gap/OrbitalStructure.gd
+%%DATADIR%%/pkg/majoranaalgebras/gap/OrbitalStructure.gi
 %%DATADIR%%/pkg/majoranaalgebras/gap/Orbits.gd
 %%DATADIR%%/pkg/majoranaalgebras/gap/Orbits.gi
 %%DATADIR%%/pkg/majoranaalgebras/gap/SetUp.gd
 %%DATADIR%%/pkg/majoranaalgebras/gap/SetUp.gi
 %%DATADIR%%/pkg/majoranaalgebras/gap/Shapes.gd
 %%DATADIR%%/pkg/majoranaalgebras/gap/Shapes.gi
+%%DATADIR%%/pkg/majoranaalgebras/gap/SignedPerm.gd
+%%DATADIR%%/pkg/majoranaalgebras/gap/SignedPerm.gi
 %%DATADIR%%/pkg/majoranaalgebras/gap/Test.gd
 %%DATADIR%%/pkg/majoranaalgebras/gap/Test.gi
 %%DATADIR%%/pkg/majoranaalgebras/gap/thesis_examples.g
 %%DATADIR%%/pkg/majoranaalgebras/init.g
 %%DATADIR%%/pkg/majoranaalgebras/makedoc.g
 %%DATADIR%%/pkg/majoranaalgebras/read.g
-%%DATADIR%%/pkg/majoranaalgebras/scripts/build_gap.sh
-%%DATADIR%%/pkg/majoranaalgebras/scripts/build_pkg.sh
-%%DATADIR%%/pkg/majoranaalgebras/scripts/gather-coverage.sh
-%%DATADIR%%/pkg/majoranaalgebras/scripts/run_tests.sh
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@@ -21676,8 +21691,10 @@ lib/libgap.so.8.0.0
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+%%DATADIR%%/pkg/nconvex/process_coverage.py
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 %%DATADIR%%/pkg/nconvex/release-gap-package
-%%DATADIR%%/pkg/nconvex/tst/000_LoadPackage.tst
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 %%DATADIR%%/pkg/nconvex/tst/nconvex01.tst
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@@ -22566,8 +22587,10 @@ lib/libgap.so.8.0.0
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-%%DATADIR%%/pkg/patternclass/scripts/gather-coverage.sh
-%%DATADIR%%/pkg/patternclass/scripts/run_tests.sh
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-%%DATADIR%%/pkg/recog/.mailmap
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+%%DATADIR%%/pkg/recog/COPYRIGHT
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-%%DATADIR%%/pkg/recog/Makefile
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+%%DATADIR%%/pkg/recog/doc/_Chapter_How_to_write_a_recognition_method.xml
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+%%DATADIR%%/pkg/recog/examples/challenges-by-frank-luebeck/README.md
+%%DATADIR%%/pkg/recog/examples/challenges-by-frank-luebeck/example1.g.gz
+%%DATADIR%%/pkg/recog/examples/challenges-by-frank-luebeck/example10.g.gz
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+%%DATADIR%%/pkg/recog/examples/challenges-by-frank-luebeck/example12.g.gz
+%%DATADIR%%/pkg/recog/examples/challenges-by-frank-luebeck/example2.g.gz
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 %%DATADIR%%/pkg/recog/examples/colvaexamples.g
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-%%DATADIR%%/pkg/recog/examples/example9.g.gz
+%%DATADIR%%/pkg/recog/examples/cyclic2.gi
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 %%DATADIR%%/pkg/recog/examples/glwrgltens.g
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-%%DATADIR%%/pkg/recog/gap/almostsimple/twoelorders.gi
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+%%DATADIR%%/pkg/recog/gap/projective/almostsimple/lietype.gi
+%%DATADIR%%/pkg/recog/gap/projective/almostsimple/threeelorders.gi
+%%DATADIR%%/pkg/recog/gap/projective/c3c5.gi
+%%DATADIR%%/pkg/recog/gap/projective/c6.gi
+%%DATADIR%%/pkg/recog/gap/projective/classicalnatural.gi
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 %%DATADIR%%/pkg/recog/misc/bbox/Co2G1-find1
@@ -24802,6 +24847,7 @@ lib/libgap.so.8.0.0
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+%%DATADIR%%/pkg/recog/misc/colva/README.md
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 %%DATADIR%%/pkg/recog/misc/colva/Refine.g
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@@ -24812,6 +24858,8 @@ lib/libgap.so.8.0.0
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+%%DATADIR%%/pkg/recog/tst/broken/veryslow/MatM11MaxSubgroups.tst
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-%%DATADIR%%/pkg/recog/tst/veryslow/MatFDPM.tst
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+%%DATADIR%%/pkg/recog/tst/working/quick/ProjReducible.tst
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+%%DATADIR%%/pkg/recog/tst/working/quick/ProjTensorInduced.tst
+%%DATADIR%%/pkg/recog/tst/working/quick/ProjThreeLargeElOrders.tst
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+%%DATADIR%%/pkg/recog/tst/working/slow/NonDeletedPermModuleRepOfSn.tst
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+%%DATADIR%%/pkg/recog/tst/working/slow/bugfix.tst
+%%DATADIR%%/pkg/recog/tst/working/veryslow/ClassicalNatural.tst
+%%DATADIR%%/pkg/recog/tst/working/veryslow/MatC6.tst
+%%DATADIR%%/pkg/recog/tst/working/veryslow/MatrixFiniteDeletedPermutationModule.tst
+%%DATADIR%%/pkg/recog/tst/working/veryslow/PermSym10Subgroup.tst
+%%DATADIR%%/pkg/recog/tst/working/veryslow/PermTrans16.tst
 %%DATADIR%%/pkg/repndecomp/LICENSE
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 %%DATADIR%%/pkg/ringsforhomalg/examples/gap_ZZ.g
 %%DATADIR%%/pkg/ringsforhomalg/examples/homalg.g
@@ -25285,6 +25356,8 @@ lib/libgap.so.8.0.0
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 %%DATADIR%%/pkg/ringsforhomalg/tst/100_LoadPackage.tst
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+%%DATADIR%%/pkg/ringsforhomalg/tst/all.tst
+%%DATADIR%%/pkg/ringsforhomalg/tst/convert.tst
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@@ -25613,7 +25686,6 @@ lib/libgap.so.8.0.0
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@@ -28072,6 +28144,7 @@ lib/libgap.so.8.0.0
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 %%DATADIR%%/pkg/singular/contrib/all_pts.lib
 %%DATADIR%%/pkg/singular/contrib/rr_space.lib
+%%DATADIR%%/pkg/singular/doc/_entities.xml
 %%DATADIR%%/pkg/singular/doc/agcode.xml
 %%DATADIR%%/pkg/singular/doc/chap0.html
 %%DATADIR%%/pkg/singular/doc/chap0.txt
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+%%DATADIR%%/pkg/singular/doc/manual.lab
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 %%DATADIR%%/pkg/singular/doc/nocolorprompt.css
@@ -32129,20 +32203,12 @@ lib/libgap.so.8.0.0
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-%%DATADIR%%/pkg/sonata/doc/ref/manual.toc
 %%DATADIR%%/pkg/sonata/doc/ref/nfplwd.tex
 %%DATADIR%%/pkg/sonata/doc/ref/ngroups.tex
 %%DATADIR%%/pkg/sonata/doc/ref/nr.tex
@@ -32158,20 +32224,12 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/sonata/doc/tut/grpsupp.tex
 %%DATADIR%%/pkg/sonata/doc/tut/ideals.tex
 %%DATADIR%%/pkg/sonata/doc/tut/libnr.tex
-%%DATADIR%%/pkg/sonata/doc/tut/manual.aux
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-%%DATADIR%%/pkg/sonata/doc/tut/manual.log
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 %%DATADIR%%/pkg/sonata/doc/tut/manual.six
 %%DATADIR%%/pkg/sonata/doc/tut/manual.tex
-%%DATADIR%%/pkg/sonata/doc/tut/manual.toc
 %%DATADIR%%/pkg/sonata/doc/tut/ngroups.tex
 %%DATADIR%%/pkg/sonata/doc/tut/nr.tex
 %%DATADIR%%/pkg/sonata/doc/tut/plnr.tex
@@ -32902,6 +32960,8 @@ lib/libgap.so.8.0.0
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 %%DATADIR%%/pkg/toolsforhomalg/doc/_Chapter_Basics.xml
 %%DATADIR%%/pkg/toolsforhomalg/doc/_Chapter_Caches.xml
+%%DATADIR%%/pkg/toolsforhomalg/doc/_Chapter_Lazy_arrays.xml
+%%DATADIR%%/pkg/toolsforhomalg/doc/_Chapter_Lazy_homogeneous_lists.xml
 %%DATADIR%%/pkg/toolsforhomalg/doc/_Chapter_Lists_with_attributes.xml
 %%DATADIR%%/pkg/toolsforhomalg/doc/_Chapter_Pointers.xml
 %%DATADIR%%/pkg/toolsforhomalg/doc/_Chapter_ToDo-list.xml
@@ -32933,6 +32993,12 @@ lib/libgap.so.8.0.0
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 %%DATADIR%%/pkg/toolsforhomalg/doc/chap7.txt
 %%DATADIR%%/pkg/toolsforhomalg/doc/chap7_mj.html
+%%DATADIR%%/pkg/toolsforhomalg/doc/chap8.html
+%%DATADIR%%/pkg/toolsforhomalg/doc/chap8.txt
+%%DATADIR%%/pkg/toolsforhomalg/doc/chap8_mj.html
+%%DATADIR%%/pkg/toolsforhomalg/doc/chap9.html
+%%DATADIR%%/pkg/toolsforhomalg/doc/chap9.txt
+%%DATADIR%%/pkg/toolsforhomalg/doc/chap9_mj.html
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 %%DATADIR%%/pkg/toolsforhomalg/doc/chapInd.txt
 %%DATADIR%%/pkg/toolsforhomalg/doc/chapInd_mj.html
@@ -32961,6 +33027,10 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/toolsforhomalg/gap/InstallViews.gi
 %%DATADIR%%/pkg/toolsforhomalg/gap/Julia.gd
 %%DATADIR%%/pkg/toolsforhomalg/gap/Julia.gi
+%%DATADIR%%/pkg/toolsforhomalg/gap/LazyArrays.gd
+%%DATADIR%%/pkg/toolsforhomalg/gap/LazyArrays.gi
+%%DATADIR%%/pkg/toolsforhomalg/gap/LazyHLists.gd
+%%DATADIR%%/pkg/toolsforhomalg/gap/LazyHLists.gi
 %%DATADIR%%/pkg/toolsforhomalg/gap/ListsWithAttributes.gd
 %%DATADIR%%/pkg/toolsforhomalg/gap/ListsWithAttributes.gi
 %%DATADIR%%/pkg/toolsforhomalg/gap/ToDoListBluePrints.gd
@@ -36501,6 +36571,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/utils/README.md
 %%DATADIR%%/pkg/utils/doc/_AutoDocMainFile.xml
 %%DATADIR%%/pkg/utils/doc/_Chunks.xml
+%%DATADIR%%/pkg/utils/doc/_entities.xml
 %%DATADIR%%/pkg/utils/doc/bib.xml
 %%DATADIR%%/pkg/utils/doc/bib.xml.bib
 %%DATADIR%%/pkg/utils/doc/chap0.html
@@ -36511,6 +36582,9 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/utils/doc/chap10.html
 %%DATADIR%%/pkg/utils/doc/chap10.txt
 %%DATADIR%%/pkg/utils/doc/chap10_mj.html
+%%DATADIR%%/pkg/utils/doc/chap11.html
+%%DATADIR%%/pkg/utils/doc/chap11.txt
+%%DATADIR%%/pkg/utils/doc/chap11_mj.html
 %%DATADIR%%/pkg/utils/doc/chap1_mj.html
 %%DATADIR%%/pkg/utils/doc/chap2.html
 %%DATADIR%%/pkg/utils/doc/chap2.txt
@@ -36543,6 +36617,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/utils/doc/chapInd.txt
 %%DATADIR%%/pkg/utils/doc/chapInd_mj.html
 %%DATADIR%%/pkg/utils/doc/chooser.html
+%%DATADIR%%/pkg/utils/doc/download.xml
 %%DATADIR%%/pkg/utils/doc/gaplog.css
 %%DATADIR%%/pkg/utils/doc/groups.xml
 %%DATADIR%%/pkg/utils/doc/intro.xml
@@ -36570,6 +36645,8 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/utils/doc/transfer.xml
 %%DATADIR%%/pkg/utils/doc/utils.xml
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+%%DATADIR%%/pkg/utils/lib/download.gd
+%%DATADIR%%/pkg/utils/lib/download.gi
 %%DATADIR%%/pkg/utils/lib/files.gd
 %%DATADIR%%/pkg/utils/lib/files.gi
 %%DATADIR%%/pkg/utils/lib/groups.gd
@@ -36597,6 +36674,7 @@ lib/libgap.so.8.0.0
 %%DATADIR%%/pkg/utils/lib/string.gi
 %%DATADIR%%/pkg/utils/makedoc.g
 %%DATADIR%%/pkg/utils/read.g
+%%DATADIR%%/pkg/utils/tst/download.tst
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