git: 610c83b9e4f5 - main - science/cif-tools: New port: Suite of programs to manipulate and examine mmCIF files

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=610c83b9e4f5c92a92210c99985b9d38c5682f2b

commit 610c83b9e4f5c92a92210c99985b9d38c5682f2b
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2022-10-04 02:03:33 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2022-10-04 02:40:27 +0000

    science/cif-tools: New port: Suite of programs to manipulate and examine mmCIF files
---
 science/Makefile                            |  1 +
 science/cif-tools/Makefile                  | 21 +++++++++++++++++++++
 science/cif-tools/distinfo                  |  3 +++
 science/cif-tools/files/patch-src_mmCQL.cpp | 10 ++++++++++
 science/cif-tools/pkg-descr                 |  2 ++
 science/cif-tools/pkg-plist                 | 16 ++++++++++++++++
 6 files changed, 53 insertions(+)

diff --git a/science/Makefile b/science/Makefile
index e34cd23b5309..97d726fb641f 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -52,6 +52,7 @@
     SUBDIR += chemtool-devel
     SUBDIR += chimes-calculator
     SUBDIR += chrono
+    SUBDIR += cif-tools
     SUBDIR += clhep
     SUBDIR += clipper
     SUBDIR += code_saturne
diff --git a/science/cif-tools/Makefile b/science/cif-tools/Makefile
new file mode 100644
index 000000000000..6f366952ddba
--- /dev/null
+++ b/science/cif-tools/Makefile
@@ -0,0 +1,21 @@
+PORTNAME=	cif-tools
+DISTVERSIONPREFIX=	v
+DISTVERSION=	1.0.3
+CATEGORIES=	science
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	Suite of programs to manipulate and examine mmCIF files
+WWW=		https://github.com/PDB-REDO/cif-tools
+
+LICENSE=	BSD2CLAUSE
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+LIB_DEPENDS=	libboost_iostreams.so:devel/boost-libs \
+		libcifpp.so:science/libcifpp
+
+USES=		cmake compiler:c++17-lang
+
+USE_GITHUB=	yes
+GH_ACCOUNT=	PDB-REDO
+
+.include <bsd.port.mk>
diff --git a/science/cif-tools/distinfo b/science/cif-tools/distinfo
new file mode 100644
index 000000000000..875de464c6d7
--- /dev/null
+++ b/science/cif-tools/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1664848416
+SHA256 (PDB-REDO-cif-tools-v1.0.3_GH0.tar.gz) = 06cfd420f63821729fc5bccfedec4f240ce88ba1b0d39844aae6fb0c2cdcb340
+SIZE (PDB-REDO-cif-tools-v1.0.3_GH0.tar.gz) = 28264
diff --git a/science/cif-tools/files/patch-src_mmCQL.cpp b/science/cif-tools/files/patch-src_mmCQL.cpp
new file mode 100644
index 000000000000..33087df8b984
--- /dev/null
+++ b/science/cif-tools/files/patch-src_mmCQL.cpp
@@ -0,0 +1,10 @@
+--- src/mmCQL.cpp.orig	2022-10-04 01:58:30 UTC
++++ src/mmCQL.cpp
+@@ -29,6 +29,7 @@
+ #include <fstream>
+ #include <filesystem>
+ #include <functional>
++#include <stack>
+ #include <unordered_set>
+ 
+ #include <boost/program_options.hpp>
diff --git a/science/cif-tools/pkg-descr b/science/cif-tools/pkg-descr
new file mode 100644
index 000000000000..b9290f3f0d89
--- /dev/null
+++ b/science/cif-tools/pkg-descr
@@ -0,0 +1,2 @@
+The cif-tools suite of programs are tools you can use to examine and manipulate
+mmCIF and PDB files.
diff --git a/science/cif-tools/pkg-plist b/science/cif-tools/pkg-plist
new file mode 100644
index 000000000000..5a17a0019703
--- /dev/null
+++ b/science/cif-tools/pkg-plist
@@ -0,0 +1,16 @@
+bin/cif-diff
+bin/cif-drop
+bin/cif-grep
+bin/cif-merge
+bin/cif-validate
+bin/cif2pdb
+bin/mmCQL
+bin/pdb2cif
+share/man/man1/cif-diff.1.gz
+share/man/man1/cif-drop.1.gz
+share/man/man1/cif-grep.1.gz
+share/man/man1/cif-merge.1.gz
+share/man/man1/cif-validate.1.gz
+share/man/man1/cif2pdb.1.gz
+share/man/man1/mmCQL.1.gz
+share/man/man1/pdb2cif.1.gz