From nobody Sat Oct 01 15:08:20 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Mfr845Cxtz4V6nv; Sat, 1 Oct 2022 15:08:20 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Mfr844gflz3q0P; Sat, 1 Oct 2022 15:08:20 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1664636900; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=smsxrU/XuAqTCN+0pHQD6ZV3ABXPhmqCB/RWTKCzamk=; b=Qc8QkYddF+hpSvFtkW3T2UK/M2cwxpM8XbxcnpsK86U+rL1OQvIHSyoWM59qkfRvz9wo2z /ITtMqHuxvSIe1sw7Qb93NweYtRa806/jm1t7gwxc6RB5tr6mfdkjh0DxiAbNPQ891y7eK YgjYEczwFcRu44q3dEufSwi3oK2umO2ixFlL4SFFvZfQ70l/za4biIavwh/d8YkG/OLiaD P3Wn1LcljjZObJz0tjbK34s0a2uEbLMyDR7hlNWVvb3vRJMOYOh6u9Oz7ve4yKjUgQMUeg HvxsIuQjy+Z3MoVxs6Aw56LiLzzWIYtMLApQYz01phWR1r9YDZD8xFV2vljr0w== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Mfr843jL8zZ9Z; Sat, 1 Oct 2022 15:08:20 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 291F8KdJ062010; Sat, 1 Oct 2022 15:08:20 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 291F8KJS062009; Sat, 1 Oct 2022 15:08:20 GMT (envelope-from git) Date: Sat, 1 Oct 2022 15:08:20 GMT Message-Id: <202210011508.291F8KJS062009@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 75d814716539 - main - biology/hhsuite: fix build on armv7 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 75d814716539317715472ded1bb11b3c6ccb72bc Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1664636900; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=smsxrU/XuAqTCN+0pHQD6ZV3ABXPhmqCB/RWTKCzamk=; b=rrZnhljJIXSMVAZ9TRXNfERtSvwJ/KKMrZqLupvBNxMFhc4Uombw3x7rpSG5aq1hvTJnAf FxiF6WTqvNFpH4xD98SRsRPg+XfA8dGugbBxRmC5XM1rZDAnucpEQ8A999waXLUnhe1jY1 wS1Iwpc9d+b9fPXhPt64q0zS0d7fOa4F53Z3G602aGY8/n9/mLmofKpKH3xv4TH63YqucQ KHwVjtKoem35QjpjnflzdJQ+KqPCStxwhfsxRiHbUNWG76urLwxClXauu6zgl7L5E5JBmb 0Gf24CR3FTpYokISz5ypWVhggambbWdZS6p3Yk2prjc8yeew78vqx3QVKzAUMA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1664636900; a=rsa-sha256; cv=none; b=LkInECVPubv9eafWX36AcMyMFV2KP/7WARVaW6OCQsA9eN/+UD3w5NTfqRrjoox6+djOJs bnKIL7TVRjoxq2nWvkg9D7C8N5FoNA8bIh72NWPX2ibwPJs4OJsPC3UnSaX2UptuKx0KrR ZAakZeoA/YAeenS93TO0DGHR+UmUBJHF9fudvdyHxSltJp2KysEZqw1Fk71uKabk1faaxJ UpNwvKosWIRe7h9ywvordXmU7fersfDnH5zD7kskUIfbFMDeqlE/4vRrhlxEQl4ns4CwZR E/pXMEhhF+6AIiVXHA6ncansTMBQjuUR1ggQjGxuoMPF+ewE5p/GpiPHf2Da8g== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=75d814716539317715472ded1bb11b3c6ccb72bc commit 75d814716539317715472ded1bb11b3c6ccb72bc Author: Robert Clausecker AuthorDate: 2022-10-01 15:06:43 +0000 Commit: Yuri Victorovich CommitDate: 2022-10-01 15:08:17 +0000 biology/hhsuite: fix build on armv7 PR: 266736 --- biology/hhsuite/Makefile | 2 -- biology/hhsuite/files/patch-lib_simde_simde_x86_sse2.h | 11 +++++++++++ 2 files changed, 11 insertions(+), 2 deletions(-) diff --git a/biology/hhsuite/Makefile b/biology/hhsuite/Makefile index 7686f86e7278..60e0fcb6ad66 100644 --- a/biology/hhsuite/Makefile +++ b/biology/hhsuite/Makefile @@ -11,8 +11,6 @@ WWW= https://github.com/soedinglab/hh-suite LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE -BROKEN_armv7= compilation fails: no member named 'neon_f64' in 'simde__m128d_private', see https://github.com/soedinglab/hh-suite/issues/322 - LIB_DEPENDS= libmpi.so:net/openmpi USES= compiler:c++11-lang cmake perl5 python shebangfix diff --git a/biology/hhsuite/files/patch-lib_simde_simde_x86_sse2.h b/biology/hhsuite/files/patch-lib_simde_simde_x86_sse2.h new file mode 100644 index 000000000000..898d98065043 --- /dev/null +++ b/biology/hhsuite/files/patch-lib_simde_simde_x86_sse2.h @@ -0,0 +1,11 @@ +--- lib/simde/simde/x86/sse2.h.orig 2022-10-01 09:24:35 UTC ++++ lib/simde/simde/x86/sse2.h +@@ -6591,7 +6591,7 @@ simde_x_mm_negate_pd(simde__m128d a) { + + #if defined(SIMDE_POWER_ALTIVEC_P9_NATIVE) + r_.altivec_f64 = vec_neg(a_.altivec_f64); +- #elif defined(SIMDE_ARM_NEON_A32V7_NATIVE) ++ #elif defined(SIMDE_ARM_NEON_A64V8_NATIVE) + r_.neon_f64 = vnegq_f64(a_.neon_f64); + #elif defined(SIMDE_WASM_SIMD128d_NATIVE) + r_.wasm_v128d = wasm_f64x2_neg(a_.wasm_v128d);