From nobody Wed Nov 16 10:42:55 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4NC04b3f5Lz4hY7h; Wed, 16 Nov 2022 10:42:55 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4NC04b2yz8z42n7; Wed, 16 Nov 2022 10:42:55 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1668595375; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=G3sg4tQ6lOXuirfsU/5YulPOKYTxhpm8zetyWMLS24Y=; b=lgUyl0f5Bt5Dhr6jMJnHnDooZbN/K+75HldHFDCpucgiHIJ/bKXgemhXppULtpyx4TI35/ oJNxYLqRkMK0V+wUnV8UCfg9Rvgkgykvl7Niu4a+5S8rQjsCctE0nt4i+qdrg8d9/cyPCB b7dYoBTB8Pfku1o5iRk02n7y/zT1raoziANYi5lFd0qfuFLjVnevn0jprdAW/1YPELHbX3 Xx8Rsy4xBHyafKmcpikx16fPGXLgKvs8PuMMIlnMBXmaRu7xTPGnHv5Y+SMXH1CoM7AyWl yyjvHPnkkPLGUxlyTe9OtulTjybROckFEPfBX4gcBvB2qlPcSuSB1W646hgHZQ== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1668595375; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=G3sg4tQ6lOXuirfsU/5YulPOKYTxhpm8zetyWMLS24Y=; b=UEl0GSH1Dfo/lT69PxvAB4TgHU/rF7FTe99Cnv6YPaDGmJ3QBRjOyfv5NyByFXti6pvac9 70G320uYo5MGFTjhxlQZUfW16DjRkRaEqJaJq4dimMU0TPux+sU9OcAfU7CuoyLNcR1h6q H39/1/HCksIDvdkS+bahM0Xskp8RRno6LGvGc8qynmHu3lPCgH8gNt+W0gSMgHUCTZNDxN tiyvFClbVrEXpqx1uUsUGr/5FsqVuqnvtwo6x/gNXmJhlG0R0iA6JnOyCAisL01OifDDAt QsxEKw59W1MpQFkk9pUEscKHDOTkC50v5LkpHPaP78AlR+aIYVF9nlo3wepcbw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1668595375; a=rsa-sha256; cv=none; b=NE3F1w3AzsfORbrH2BK/EgCHWRX7hToT+leBpr7D4YTDHJigs6tsTUKZ+RJvS1ntYoobuE 6jN7W+hDY7rvNZG9IHIu6vCSV8mTahM4IpkRzX8BhSa5heORF5YZr+XUXcWnNuTofEVU7p KuePi1muEYC3aCP0XDlrjx8aRTlYoRv0BW30+ieNxHGmvxkOsIZoig4Ldr4UIZSDzKrl/V 8bdBrpV/0rIgoz/Drzj0nwOCKOKrZy/meyWAoB/2JYSDtf3lqXgvpYzX65d/UC3LZdzoLa wyFl0MMTQS+iB6AZcWg4tKJVJpINmZy6OmnN+xsFF79LNChgtsprkznvWGexqA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4NC04b20tSzyqY; Wed, 16 Nov 2022 10:42:55 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 2AGAgtcr079915; Wed, 16 Nov 2022 10:42:55 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 2AGAgtIY079914; Wed, 16 Nov 2022 10:42:55 GMT (envelope-from git) Date: Wed, 16 Nov 2022 10:42:55 GMT Message-Id: <202211161042.2AGAgtIY079914@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 4c3fb7e2b64c - main - science/InsightToolkit: Update 5.0.1 -> 5.2.1 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 4c3fb7e2b64c1a66797ac355cfceec991f9171c8 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=4c3fb7e2b64c1a66797ac355cfceec991f9171c8 commit 4c3fb7e2b64c1a66797ac355cfceec991f9171c8 Author: Yuri Victorovich AuthorDate: 2022-11-16 10:31:37 +0000 Commit: Yuri Victorovich CommitDate: 2022-11-16 10:42:53 +0000 science/InsightToolkit: Update 5.0.1 -> 5.2.1 Also fork InsightToolkit to InsightToolkit501 for graphics/vv. --- graphics/vv/Makefile | 4 +- science/InsightToolkit/Makefile | 58 +- science/InsightToolkit/distinfo | 10 +- science/InsightToolkit/pkg-plist | 418 ++- science/InsightToolkit501/Makefile | 67 + science/InsightToolkit501/distinfo | 5 + .../files/patch-CMake_ITKModuleTest.cmake | 10 + ...ules_ThirdParty_MINC_src_libminc_CMakeLists.txt | 34 + science/InsightToolkit501/pkg-descr | 8 + science/InsightToolkit501/pkg-plist | 3906 ++++++++++++++++++++ science/Makefile | 1 + 11 files changed, 4450 insertions(+), 71 deletions(-) diff --git a/graphics/vv/Makefile b/graphics/vv/Makefile index 0dc3c0a7c10d..cae82b56eb76 100644 --- a/graphics/vv/Makefile +++ b/graphics/vv/Makefile @@ -2,7 +2,7 @@ PORTNAME= vv DISTVERSIONPREFIX= v DISTVERSION= 1.4.0-383 DISTVERSIONSUFFIX= -g7a783a8b -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= graphics MAINTAINER= yuri@FreeBSD.org @@ -17,7 +17,7 @@ LIB_DEPENDS= libexpat.so:textproc/expat2 \ libfreetype.so:print/freetype2 \ libgdcmCommon.so:devel/gdcm \ libhdf5_cpp.so:science/hdf5 \ - libITKLabelMap-5.0.so:science/InsightToolkit \ + libITKLabelMap-5.0.so:science/InsightToolkit501 \ libpng.so:graphics/png \ libsz.so:science/libaec \ libtiff.so:graphics/tiff \ diff --git a/science/InsightToolkit/Makefile b/science/InsightToolkit/Makefile index c0dfb9f8d6e2..7db2b6c1d2c2 100644 --- a/science/InsightToolkit/Makefile +++ b/science/InsightToolkit/Makefile @@ -1,16 +1,16 @@ PORTNAME= InsightToolkit -PORTVERSION= 5.0.1 -DISTVERSIONPREFIX=v -PORTREVISION= 9 +DISTVERSIONPREFIX= v +DISTVERSION= 5.2.1 CATEGORIES= science biology -MASTER_SITES= https://github.com/InsightSoftwareConsortium/ITK/releases/download/v5.0.1/:data -DISTFILES= InsightData-5.0.1.tar.gz:data +MASTER_SITES= https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${DISTVERSION}/:data +DISTFILES= InsightData-${DISTVERSION}.tar.gz:data -MAINTAINER= ports@FreeBSD.org +MAINTAINER= yuri@FreeBSD.org COMMENT= Insight Toolkit WWW= https://www.itk.org LICENSE= APACHE20 +LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= googletest>=0:devel/googletest LIB_DEPENDS= libgdcmCommon.so:devel/gdcm \ @@ -21,36 +21,42 @@ LIB_DEPENDS= libgdcmCommon.so:devel/gdcm \ libsz.so:science/libaec \ libtiff.so:graphics/tiff -USES= cmake compiler:c++11-lang eigen:3 jpeg pkgconfig +USES= cmake:testing compiler:c++11-lang eigen:3 jpeg pkgconfig python:test +USE_LDCONFIG= ${PREFIX}/lib/InsightToolkit + USE_GITHUB= yes GH_ACCOUNT= InsightSoftwareConsortium GH_PROJECT= ITK -CMAKE_ARGS+= -DBUILD_SHARED_LIBS:BOOL=ON \ - -DITK_FORBID_DOWNLOADS:BOOL=ON \ - -DITK_LEGACY_SILENT:BOOL=ON \ - -DITK_USE_KWSTYLE:BOOL=OFF \ - -DITK_USE_SYSTEM_EXPAT:BOOL=ON \ - -DITK_USE_SYSTEM_FFTW:BOOL=ON \ - -DITK_USE_SYSTEM_GDCM:BOOL=ON \ - -DITK_USE_SYSTEM_HDF5:BOOL=ON \ - -DITK_USE_SYSTEM_JPEG:BOOL=ON \ - -DITK_USE_SYSTEM_LIBRARIES:BOOL=ON \ - -DITK_USE_SYSTEM_PNG:BOOL=ON \ - -DITK_USE_SYSTEM_TIFF:BOOL=ON \ - -DITK_USE_SYSTEM_ZLIB:BOOL=ON \ - -DModule_ITKIOMIC:BOOL=ON \ - -DModule_ITKIOTransformMINC:BOOL=ON \ - -DModule_ITKReview:BOOL=ON -USE_LDCONFIG= ${PREFIX}/lib/InsightToolkit + +CMAKE_ON= BUILD_SHARED_LIBS \ + ITK_FORBID_DOWNLOADS \ + ITK_LEGACY_SILENT \ + ITK_USE_SYSTEM_EXPAT \ + ITK_USE_SYSTEM_FFTW \ + ITK_USE_SYSTEM_GDCM \ + ITK_USE_SYSTEM_HDF5 \ + ITK_USE_SYSTEM_JPEG \ + ITK_USE_SYSTEM_LIBRARIES \ + ITK_USE_SYSTEM_PNG \ + ITK_USE_SYSTEM_TIFF \ + ITK_USE_SYSTEM_ZLIB \ + Module_ITKIOMIC \ + Module_ITKIOTransformMINC \ + Module_ITKReview +CMAKE_ARGS= -DPython3_EXECUTABLE=${PYTHON_CMD} +CMAKE_OFF= ITK_USE_KWSTYLE BUILD_TESTING +CMAKE_TESTING_ON= BUILD_TESTING # 3 tests are known to fail, see https://github.com/InsightSoftwareConsortium/ITK/issues/3739 + ITK_VER= ${PORTVERSION:R} + PLIST_SUB+= ITK_VER=${ITK_VER} OPTIONS_DEFINE= EXAMPLES TESTING EXAMPLES_DESC= Build examples (very time consuming) TESTING_DESC= Build testing programs (very time consuming) -EXAMPLES_CMAKE_ON= -DBUILD_EXAMPLES:BOOL=ON -TESTING_CMAKE_ON= -DBUILD_TESTING:BOOL=ON +EXAMPLES_CMAKE_BOOL= BUILD_EXAMPLES +TESTING_CMAKE_BOOL= BUILD_TESTING .include diff --git a/science/InsightToolkit/distinfo b/science/InsightToolkit/distinfo index 7d133ee83f34..08a01bbf5ca9 100644 --- a/science/InsightToolkit/distinfo +++ b/science/InsightToolkit/distinfo @@ -1,5 +1,5 @@ -TIMESTAMP = 1564828215 -SHA256 (InsightData-5.0.1.tar.gz) = 5fc343de9ae8e5fd14ac743a8321f5fb699928c08bf8f426aab7835a92fc805e -SIZE (InsightData-5.0.1.tar.gz) = 290801718 -SHA256 (InsightSoftwareConsortium-ITK-v5.0.1_GH0.tar.gz) = c6b3c33ecc73104c906e0e1a1bfaa41a09af24bf53a4ec5e5c265d7e82bdf69f -SIZE (InsightSoftwareConsortium-ITK-v5.0.1_GH0.tar.gz) = 20881765 +TIMESTAMP = 1668411091 +SHA256 (InsightData-5.2.1.tar.gz) = b5fcd209f456af289473ccc78f935b910168b852f3d4707d0c1e9dfd508b1757 +SIZE (InsightData-5.2.1.tar.gz) = 293448802 +SHA256 (InsightSoftwareConsortium-ITK-v5.2.1_GH0.tar.gz) = 6022b2b64624b8bcec3333fe48d5f74ff6ebceb3bdf98258ba7d7fbbc76b99ab +SIZE (InsightSoftwareConsortium-ITK-v5.2.1_GH0.tar.gz) = 20955613 diff --git a/science/InsightToolkit/pkg-plist b/science/InsightToolkit/pkg-plist index acbc5d6b3a9e..b5bb1687de8a 100644 --- a/science/InsightToolkit/pkg-plist +++ b/science/InsightToolkit/pkg-plist @@ -10,7 +10,14 @@ include/ITK-%%ITK_VER%%/DICOMParserMap.h include/ITK-%%ITK_VER%%/DICOMSource.h include/ITK-%%ITK_VER%%/DICOMTypes.h include/ITK-%%ITK_VER%%/ITKBiasCorrectionExport.h +include/ITK-%%ITK_VER%%/ITKColormapExport.h include/ITK-%%ITK_VER%%/ITKCommonExport.h +include/ITK-%%ITK_VER%%/ITKConvolutionExport.h +include/ITK-%%ITK_VER%%/ITKDeformableMeshExport.h +include/ITK-%%ITK_VER%%/ITKDenoisingExport.h +include/ITK-%%ITK_VER%%/ITKDiffusionTensorImageExport.h +include/ITK-%%ITK_VER%%/ITKFFTExport.h +include/ITK-%%ITK_VER%%/ITKFastMarchingExport.h include/ITK-%%ITK_VER%%/ITKIOBMPExport.h include/ITK-%%ITK_VER%%/ITKIOBioRadExport.h include/ITK-%%ITK_VER%%/ITKIOBrukerExport.h @@ -47,13 +54,22 @@ include/ITK-%%ITK_VER%%/ITKIOTransformMINCExport.h include/ITK-%%ITK_VER%%/ITKIOTransformMatlabExport.h include/ITK-%%ITK_VER%%/ITKIOVTKExport.h include/ITK-%%ITK_VER%%/ITKIOXMLExport.h +include/ITK-%%ITK_VER%%/ITKImageFeatureExport.h +include/ITK-%%ITK_VER%%/ITKImageIntensityExport.h include/ITK-%%ITK_VER%%/ITKKLMRegionGrowingExport.h include/ITK-%%ITK_VER%%/ITKLabelMapExport.h +include/ITK-%%ITK_VER%%/ITKMarkovRandomFieldsClassifiersExport.h +include/ITK-%%ITK_VER%%/ITKMathematicalMorphologyExport.h include/ITK-%%ITK_VER%%/ITKMeshExport.h include/ITK-%%ITK_VER%%/ITKOptimizersExport.h include/ITK-%%ITK_VER%%/ITKOptimizersv4Export.h +include/ITK-%%ITK_VER%%/ITKPDEDeformableRegistrationExport.h include/ITK-%%ITK_VER%%/ITKPolynomialsExport.h include/ITK-%%ITK_VER%%/ITKQuadEdgeMeshExport.h +include/ITK-%%ITK_VER%%/ITKQuadEdgeMeshFilteringExport.h +include/ITK-%%ITK_VER%%/ITKRegionGrowingExport.h +include/ITK-%%ITK_VER%%/ITKRegistrationMethodsv4Export.h +include/ITK-%%ITK_VER%%/ITKSmoothingExport.h include/ITK-%%ITK_VER%%/ITKSpatialObjectsExport.h include/ITK-%%ITK_VER%%/ITKStatisticsExport.h include/ITK-%%ITK_VER%%/ITKTransformExport.h @@ -62,10 +78,6 @@ include/ITK-%%ITK_VER%%/ITKVideoCoreExport.h include/ITK-%%ITK_VER%%/ITKVideoIOExport.h include/ITK-%%ITK_VER%%/ITKWatershedsExport.h include/ITK-%%ITK_VER%%/NrrdIO.h -include/ITK-%%ITK_VER%%/Utilities/nifti1.h -include/ITK-%%ITK_VER%%/Utilities/nifti1_io.h -include/ITK-%%ITK_VER%%/Utilities/nifti1_tool.h -include/ITK-%%ITK_VER%%/Utilities/znzlib.h include/ITK-%%ITK_VER%%/VNLIterativeSparseSolverTraits.h include/ITK-%%ITK_VER%%/VNLSparseLUSolverTraits.h include/ITK-%%ITK_VER%%/arpack/dgetv0.h @@ -80,6 +92,7 @@ include/ITK-%%ITK_VER%%/arpack/dseupd.h include/ITK-%%ITK_VER%%/arpack/dsgets.h include/ITK-%%ITK_VER%%/arpack/dsortr.h include/ITK-%%ITK_VER%%/arpack/dstqrb.h +include/ITK-%%ITK_VER%%/bignum-dtoa.h include/ITK-%%ITK_VER%%/bignum.h include/ITK-%%ITK_VER%%/blas/caxpy.h include/ITK-%%ITK_VER%%/blas/ccopy.h @@ -152,6 +165,7 @@ include/ITK-%%ITK_VER%%/datapac/camsun.h include/ITK-%%ITK_VER%%/diy-fp.h include/ITK-%%ITK_VER%%/double-conversion-configure.h include/ITK-%%ITK_VER%%/double-conversion.h +include/ITK-%%ITK_VER%%/double-to-string.h include/ITK-%%ITK_VER%%/eispack/balanc.h include/ITK-%%ITK_VER%%/eispack/balbak.h include/ITK-%%ITK_VER%%/eispack/cdiv.h @@ -451,6 +465,7 @@ include/ITK-%%ITK_VER%%/itkBresenhamLine.h include/ITK-%%ITK_VER%%/itkBresenhamLine.hxx include/ITK-%%ITK_VER%%/itkBruker2dseqImageIO.h include/ITK-%%ITK_VER%%/itkBruker2dseqImageIOFactory.h +include/ITK-%%ITK_VER%%/itkBufferedImageNeighborhoodPixelAccessPolicy.h include/ITK-%%ITK_VER%%/itkBuildInformation.h include/ITK-%%ITK_VER%%/itkByteSwapper.h include/ITK-%%ITK_VER%%/itkByteSwapper.hxx @@ -470,6 +485,8 @@ include/ITK-%%ITK_VER%%/itkCannySegmentationLevelSetImageFilter.h include/ITK-%%ITK_VER%%/itkCannySegmentationLevelSetImageFilter.hxx include/ITK-%%ITK_VER%%/itkCastImageFilter.h include/ITK-%%ITK_VER%%/itkCastImageFilter.hxx +include/ITK-%%ITK_VER%%/itkCastSpatialObjectFilter.h +include/ITK-%%ITK_VER%%/itkCastSpatialObjectFilter.hxx include/ITK-%%ITK_VER%%/itkCellInterface.h include/ITK-%%ITK_VER%%/itkCellInterface.hxx include/ITK-%%ITK_VER%%/itkCellInterfaceVisitor.h @@ -503,8 +520,6 @@ include/ITK-%%ITK_VER%%/itkChangeRegionLabelMapFilter.hxx include/ITK-%%ITK_VER%%/itkCheckerBoardImageFilter.h include/ITK-%%ITK_VER%%/itkCheckerBoardImageFilter.hxx include/ITK-%%ITK_VER%%/itkChiSquareDistribution.h -include/ITK-%%ITK_VER%%/itkChildTreeIterator.h -include/ITK-%%ITK_VER%%/itkChildTreeIterator.hxx include/ITK-%%ITK_VER%%/itkClampImageFilter.h include/ITK-%%ITK_VER%%/itkClampImageFilter.hxx include/ITK-%%ITK_VER%%/itkClassifierBase.h @@ -522,6 +537,7 @@ include/ITK-%%ITK_VER%%/itkCommand.h include/ITK-%%ITK_VER%%/itkCommandIterationUpdate.h include/ITK-%%ITK_VER%%/itkCommandIterationUpdatev4.h include/ITK-%%ITK_VER%%/itkCommandVnlIterationUpdate.h +include/ITK-%%ITK_VER%%/itkCommonEnums.h include/ITK-%%ITK_VER%%/itkCompareHistogramImageToImageMetric.h include/ITK-%%ITK_VER%%/itkCompareHistogramImageToImageMetric.hxx include/ITK-%%ITK_VER%%/itkCompensatedSummation.h @@ -543,6 +559,8 @@ include/ITK-%%ITK_VER%%/itkComposeDisplacementFieldsImageFilter.h include/ITK-%%ITK_VER%%/itkComposeDisplacementFieldsImageFilter.hxx include/ITK-%%ITK_VER%%/itkComposeImageFilter.h include/ITK-%%ITK_VER%%/itkComposeImageFilter.hxx +include/ITK-%%ITK_VER%%/itkComposeScaleSkewVersor3DTransform.h +include/ITK-%%ITK_VER%%/itkComposeScaleSkewVersor3DTransform.hxx include/ITK-%%ITK_VER%%/itkCompositeTransform.h include/ITK-%%ITK_VER%%/itkCompositeTransform.hxx include/ITK-%%ITK_VER%%/itkCompositeTransformIOHelper.h @@ -958,6 +976,8 @@ include/ITK-%%ITK_VER%%/itkGPUAnisotropicDiffusionImageFilter.hxx include/ITK-%%ITK_VER%%/itkGPUBinaryThresholdImageFilter.h include/ITK-%%ITK_VER%%/itkGPUBinaryThresholdImageFilter.hxx include/ITK-%%ITK_VER%%/itkGPUBoxImageFilter.h +include/ITK-%%ITK_VER%%/itkGPUCastImageFilter.h +include/ITK-%%ITK_VER%%/itkGPUCastImageFilter.hxx include/ITK-%%ITK_VER%%/itkGPUContextManager.h include/ITK-%%ITK_VER%%/itkGPUDataManager.h include/ITK-%%ITK_VER%%/itkGPUDemonsRegistrationFilter.h @@ -968,11 +988,13 @@ include/ITK-%%ITK_VER%%/itkGPUDenseFiniteDifferenceImageFilter.h include/ITK-%%ITK_VER%%/itkGPUDenseFiniteDifferenceImageFilter.hxx include/ITK-%%ITK_VER%%/itkGPUDiscreteGaussianImageFilter.h include/ITK-%%ITK_VER%%/itkGPUDiscreteGaussianImageFilter.hxx +include/ITK-%%ITK_VER%%/itkGPUFiniteDifferenceFilterEnum.h include/ITK-%%ITK_VER%%/itkGPUFiniteDifferenceFunction.h include/ITK-%%ITK_VER%%/itkGPUFiniteDifferenceImageFilter.h include/ITK-%%ITK_VER%%/itkGPUFiniteDifferenceImageFilter.hxx include/ITK-%%ITK_VER%%/itkGPUFunctorBase.h include/ITK-%%ITK_VER%%/itkGPUGradientAnisotropicDiffusionImageFilter.h +include/ITK-%%ITK_VER%%/itkGPUGradientAnisotropicDiffusionImageFilterFactory.h include/ITK-%%ITK_VER%%/itkGPUGradientNDAnisotropicDiffusionFunction.h include/ITK-%%ITK_VER%%/itkGPUGradientNDAnisotropicDiffusionFunction.hxx include/ITK-%%ITK_VER%%/itkGPUImage.h @@ -1280,6 +1302,7 @@ include/ITK-%%ITK_VER%%/itkImageRegionIterator.h include/ITK-%%ITK_VER%%/itkImageRegionIterator.hxx include/ITK-%%ITK_VER%%/itkImageRegionIteratorWithIndex.h include/ITK-%%ITK_VER%%/itkImageRegionIteratorWithIndex.hxx +include/ITK-%%ITK_VER%%/itkImageRegionRange.h include/ITK-%%ITK_VER%%/itkImageRegionReverseConstIterator.h include/ITK-%%ITK_VER%%/itkImageRegionReverseIterator.h include/ITK-%%ITK_VER%%/itkImageRegionReverseIterator.hxx @@ -1354,7 +1377,6 @@ include/ITK-%%ITK_VER%%/itkImportImageContainer.h include/ITK-%%ITK_VER%%/itkImportImageContainer.hxx include/ITK-%%ITK_VER%%/itkImportImageFilter.h include/ITK-%%ITK_VER%%/itkImportImageFilter.hxx -include/ITK-%%ITK_VER%%/itkInOrderTreeIterator.h include/ITK-%%ITK_VER%%/itkInPlaceImageFilter.h include/ITK-%%ITK_VER%%/itkInPlaceImageFilter.hxx include/ITK-%%ITK_VER%%/itkInPlaceLabelMapFilter.h @@ -1556,9 +1578,6 @@ include/ITK-%%ITK_VER%%/itkLaplacianSegmentationLevelSetImageFilter.h include/ITK-%%ITK_VER%%/itkLaplacianSegmentationLevelSetImageFilter.hxx include/ITK-%%ITK_VER%%/itkLaplacianSharpeningImageFilter.h include/ITK-%%ITK_VER%%/itkLaplacianSharpeningImageFilter.hxx -include/ITK-%%ITK_VER%%/itkLeafTreeIterator.h -include/ITK-%%ITK_VER%%/itkLevelOrderTreeIterator.h -include/ITK-%%ITK_VER%%/itkLevelOrderTreeIterator.hxx include/ITK-%%ITK_VER%%/itkLevelSet.h include/ITK-%%ITK_VER%%/itkLevelSetBase.h include/ITK-%%ITK_VER%%/itkLevelSetBase.hxx @@ -1714,6 +1733,7 @@ include/ITK-%%ITK_VER%%/itkMatchCardinalityImageToImageMetric.h include/ITK-%%ITK_VER%%/itkMatchCardinalityImageToImageMetric.hxx include/ITK-%%ITK_VER%%/itkMath.h include/ITK-%%ITK_VER%%/itkMathDetail.h +include/ITK-%%ITK_VER%%/itkMathematicalMorphologyEnums.h include/ITK-%%ITK_VER%%/itkMatlabTransformIO.h include/ITK-%%ITK_VER%%/itkMatlabTransformIOFactory.h include/ITK-%%ITK_VER%%/itkMatrix.h @@ -2019,7 +2039,6 @@ include/ITK-%%ITK_VER%%/itkObjectToObjectMetricBase.hxx include/ITK-%%ITK_VER%%/itkObjectToObjectMultiMetricv4.h include/ITK-%%ITK_VER%%/itkObjectToObjectMultiMetricv4.hxx include/ITK-%%ITK_VER%%/itkObjectToObjectOptimizerBase.h -include/ITK-%%ITK_VER%%/itkObjectToObjectOptimizerBase.hxx include/ITK-%%ITK_VER%%/itkOctree.h include/ITK-%%ITK_VER%%/itkOctree.hxx include/ITK-%%ITK_VER%%/itkOctreeNode.h @@ -2034,7 +2053,6 @@ include/ITK-%%ITK_VER%%/itkOpeningByReconstructionImageFilter.hxx include/ITK-%%ITK_VER%%/itkOptimizer.h include/ITK-%%ITK_VER%%/itkOptimizerParameterScalesEstimator.h include/ITK-%%ITK_VER%%/itkOptimizerParameters.h -include/ITK-%%ITK_VER%%/itkOptimizerParameters.hxx include/ITK-%%ITK_VER%%/itkOptimizerParametersHelper.h include/ITK-%%ITK_VER%%/itkOrImageFilter.h include/ITK-%%ITK_VER%%/itkOrientImageFilter.h @@ -2136,6 +2154,8 @@ include/ITK-%%ITK_VER%%/itkPointSetToListSampleAdaptor.h include/ITK-%%ITK_VER%%/itkPointSetToListSampleAdaptor.hxx include/ITK-%%ITK_VER%%/itkPointSetToPointSetMetric.h include/ITK-%%ITK_VER%%/itkPointSetToPointSetMetric.hxx +include/ITK-%%ITK_VER%%/itkPointSetToPointSetMetricWithIndexv4.h +include/ITK-%%ITK_VER%%/itkPointSetToPointSetMetricWithIndexv4.hxx include/ITK-%%ITK_VER%%/itkPointSetToPointSetMetricv4.h include/ITK-%%ITK_VER%%/itkPointSetToPointSetMetricv4.hxx include/ITK-%%ITK_VER%%/itkPointSetToPointSetRegistrationMethod.h @@ -2156,12 +2176,10 @@ include/ITK-%%ITK_VER%%/itkPolylineMask2DImageFilter.hxx include/ITK-%%ITK_VER%%/itkPolylineMaskImageFilter.h include/ITK-%%ITK_VER%%/itkPolylineMaskImageFilter.hxx include/ITK-%%ITK_VER%%/itkPoolMultiThreader.h -include/ITK-%%ITK_VER%%/itkPostOrderTreeIterator.h include/ITK-%%ITK_VER%%/itkPowImageFilter.h include/ITK-%%ITK_VER%%/itkPowellOptimizer.h include/ITK-%%ITK_VER%%/itkPowellOptimizerv4.h include/ITK-%%ITK_VER%%/itkPowellOptimizerv4.hxx -include/ITK-%%ITK_VER%%/itkPreOrderTreeIterator.h include/ITK-%%ITK_VER%%/itkPrintHelper.h include/ITK-%%ITK_VER%%/itkPriorityQueueContainer.h include/ITK-%%ITK_VER%%/itkPriorityQueueContainer.hxx @@ -2350,7 +2368,6 @@ include/ITK-%%ITK_VER%%/itkRobustAutomaticThresholdCalculator.h include/ITK-%%ITK_VER%%/itkRobustAutomaticThresholdCalculator.hxx include/ITK-%%ITK_VER%%/itkRobustAutomaticThresholdImageFilter.h include/ITK-%%ITK_VER%%/itkRobustAutomaticThresholdImageFilter.hxx -include/ITK-%%ITK_VER%%/itkRootTreeIterator.h include/ITK-%%ITK_VER%%/itkRoundImageFilter.h include/ITK-%%ITK_VER%%/itkSLICImageFilter.h include/ITK-%%ITK_VER%%/itkSLICImageFilter.hxx @@ -2662,6 +2679,8 @@ include/ITK-%%ITK_VER%%/itkTensorRelativeAnisotropyImageFilter.h include/ITK-%%ITK_VER%%/itkTernaryAddImageFilter.h include/ITK-%%ITK_VER%%/itkTernaryFunctorImageFilter.h include/ITK-%%ITK_VER%%/itkTernaryFunctorImageFilter.hxx +include/ITK-%%ITK_VER%%/itkTernaryGeneratorImageFilter.h +include/ITK-%%ITK_VER%%/itkTernaryGeneratorImageFilter.hxx include/ITK-%%ITK_VER%%/itkTernaryMagnitudeImageFilter.h include/ITK-%%ITK_VER%%/itkTernaryMagnitudeSquaredImageFilter.h include/ITK-%%ITK_VER%%/itkTernaryOperatorImageFilter.h @@ -2731,6 +2750,7 @@ include/ITK-%%ITK_VER%%/itkTobogganImageFilter.h include/ITK-%%ITK_VER%%/itkTobogganImageFilter.hxx include/ITK-%%ITK_VER%%/itkTorusInteriorExteriorSpatialFunction.h include/ITK-%%ITK_VER%%/itkTorusInteriorExteriorSpatialFunction.hxx +include/ITK-%%ITK_VER%%/itkTotalProgressReporter.h include/ITK-%%ITK_VER%%/itkTransform.h include/ITK-%%ITK_VER%%/itkTransform.hxx include/ITK-%%ITK_VER%%/itkTransformBase.h @@ -2748,15 +2768,6 @@ include/ITK-%%ITK_VER%%/itkTransformToDisplacementFieldFilter.h include/ITK-%%ITK_VER%%/itkTransformToDisplacementFieldFilter.hxx include/ITK-%%ITK_VER%%/itkTranslationTransform.h include/ITK-%%ITK_VER%%/itkTranslationTransform.hxx -include/ITK-%%ITK_VER%%/itkTreeChangeEvent.h -include/ITK-%%ITK_VER%%/itkTreeContainer.h -include/ITK-%%ITK_VER%%/itkTreeContainer.hxx -include/ITK-%%ITK_VER%%/itkTreeContainerBase.h -include/ITK-%%ITK_VER%%/itkTreeIteratorBase.h -include/ITK-%%ITK_VER%%/itkTreeIteratorBase.hxx -include/ITK-%%ITK_VER%%/itkTreeIteratorClone.h -include/ITK-%%ITK_VER%%/itkTreeNode.h -include/ITK-%%ITK_VER%%/itkTreeNode.hxx include/ITK-%%ITK_VER%%/itkTriangleCell.h include/ITK-%%ITK_VER%%/itkTriangleCell.hxx include/ITK-%%ITK_VER%%/itkTriangleCellTopology.h @@ -2829,8 +2840,6 @@ include/ITK-%%ITK_VER%%/itkVector.h include/ITK-%%ITK_VER%%/itkVector.hxx include/ITK-%%ITK_VER%%/itkVectorAnisotropicDiffusionFunction.h include/ITK-%%ITK_VER%%/itkVectorAnisotropicDiffusionFunction.hxx -include/ITK-%%ITK_VER%%/itkVectorCentralDifferenceImageFunction.h -include/ITK-%%ITK_VER%%/itkVectorCentralDifferenceImageFunction.hxx include/ITK-%%ITK_VER%%/itkVectorConfidenceConnectedImageFilter.h include/ITK-%%ITK_VER%%/itkVectorConfidenceConnectedImageFilter.hxx include/ITK-%%ITK_VER%%/itkVectorConnectedComponentImageFilter.h @@ -3013,7 +3022,308 @@ include/ITK-%%ITK_VER%%/itk_minc2.h include/ITK-%%ITK_VER%%/itk_openjpeg.h include/ITK-%%ITK_VER%%/itk_png.h include/ITK-%%ITK_VER%%/itk_zlib.h -include/ITK-%%ITK_VER%%/itkfdstream/fdstream.hpp +include/ITK-%%ITK_VER%%/itkeigen/Eigen/Cholesky +include/ITK-%%ITK_VER%%/itkeigen/Eigen/CholmodSupport +include/ITK-%%ITK_VER%%/itkeigen/Eigen/Core +include/ITK-%%ITK_VER%%/itkeigen/Eigen/Dense +include/ITK-%%ITK_VER%%/itkeigen/Eigen/Eigen +include/ITK-%%ITK_VER%%/itkeigen/Eigen/Eigenvalues +include/ITK-%%ITK_VER%%/itkeigen/Eigen/Geometry +include/ITK-%%ITK_VER%%/itkeigen/Eigen/Householder +include/ITK-%%ITK_VER%%/itkeigen/Eigen/IterativeLinearSolvers +include/ITK-%%ITK_VER%%/itkeigen/Eigen/Jacobi +include/ITK-%%ITK_VER%%/itkeigen/Eigen/LU +include/ITK-%%ITK_VER%%/itkeigen/Eigen/MetisSupport +include/ITK-%%ITK_VER%%/itkeigen/Eigen/OrderingMethods +include/ITK-%%ITK_VER%%/itkeigen/Eigen/PaStiXSupport +include/ITK-%%ITK_VER%%/itkeigen/Eigen/PardisoSupport +include/ITK-%%ITK_VER%%/itkeigen/Eigen/QR +include/ITK-%%ITK_VER%%/itkeigen/Eigen/QtAlignedMalloc +include/ITK-%%ITK_VER%%/itkeigen/Eigen/SPQRSupport +include/ITK-%%ITK_VER%%/itkeigen/Eigen/SVD +include/ITK-%%ITK_VER%%/itkeigen/Eigen/Sparse +include/ITK-%%ITK_VER%%/itkeigen/Eigen/SparseCholesky +include/ITK-%%ITK_VER%%/itkeigen/Eigen/SparseCore +include/ITK-%%ITK_VER%%/itkeigen/Eigen/SparseLU +include/ITK-%%ITK_VER%%/itkeigen/Eigen/SparseQR +include/ITK-%%ITK_VER%%/itkeigen/Eigen/StdDeque +include/ITK-%%ITK_VER%%/itkeigen/Eigen/StdList +include/ITK-%%ITK_VER%%/itkeigen/Eigen/StdVector +include/ITK-%%ITK_VER%%/itkeigen/Eigen/SuperLUSupport +include/ITK-%%ITK_VER%%/itkeigen/Eigen/UmfPackSupport +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Cholesky/LDLT.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Cholesky/LLT.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Cholesky/LLT_LAPACKE.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/CholmodSupport/CholmodSupport.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Array.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/ArrayBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/ArrayWrapper.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Assign.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/AssignEvaluator.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Assign_MKL.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/BandMatrix.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Block.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/BooleanRedux.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/CommaInitializer.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/ConditionEstimator.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/CoreEvaluators.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/CoreIterators.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/CwiseBinaryOp.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/CwiseNullaryOp.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/CwiseTernaryOp.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/CwiseUnaryOp.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/CwiseUnaryView.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/DenseBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/DenseCoeffsBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/DenseStorage.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Diagonal.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/DiagonalMatrix.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/DiagonalProduct.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Dot.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/EigenBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/ForceAlignedAccess.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Fuzzy.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/GeneralProduct.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/GenericPacketMath.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/GlobalFunctions.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/IO.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Inverse.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Map.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/MapBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/MathFunctions.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/MathFunctionsImpl.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Matrix.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/MatrixBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/NestByValue.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/NoAlias.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/NumTraits.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/PermutationMatrix.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/PlainObjectBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Product.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/ProductEvaluators.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Random.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Redux.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Ref.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Replicate.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/ReturnByValue.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Reverse.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Select.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/SelfAdjointView.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/SelfCwiseBinaryOp.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Solve.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/SolveTriangular.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/SolverBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/StableNorm.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Stride.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Swap.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Transpose.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Transpositions.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/TriangularMatrix.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/VectorBlock.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/VectorwiseOp.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/Visitor.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/AVX/Complex.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/AVX/MathFunctions.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/AVX/PacketMath.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/AVX/TypeCasting.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/AVX512/PacketMath.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/AltiVec/Complex.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/CUDA/Complex.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/CUDA/Half.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/CUDA/PacketMath.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/Default/ConjHelper.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/Default/Settings.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/NEON/Complex.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/NEON/MathFunctions.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/NEON/PacketMath.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/SSE/Complex.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/SSE/MathFunctions.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/SSE/PacketMath.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/SSE/TypeCasting.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/ZVector/Complex.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/arch/ZVector/PacketMath.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/functors/AssignmentFunctors.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/functors/BinaryFunctors.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/functors/NullaryFunctors.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/functors/StlFunctors.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/functors/TernaryFunctors.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/functors/UnaryFunctors.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/GeneralMatrixVector.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/Parallelizer.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/SelfadjointProduct.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/SelfadjointRank2Update.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/TriangularMatrixVector.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/TriangularSolverMatrix.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/products/TriangularSolverVector.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/util/BlasUtil.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/util/Constants.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/util/DisableStupidWarnings.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/util/ForwardDeclarations.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/util/MKL_support.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/util/Macros.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/util/Memory.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/util/Meta.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/util/NonMPL2.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/util/ReenableStupidWarnings.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/util/StaticAssert.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Core/util/XprHelper.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/ComplexSchur.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/EigenSolver.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/RealQZ.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/RealSchur.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Eigenvalues/Tridiagonalization.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/AlignedBox.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/AngleAxis.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/EulerAngles.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/Homogeneous.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/Hyperplane.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/OrthoMethods.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/ParametrizedLine.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/Quaternion.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/Rotation2D.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/RotationBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/Scaling.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/Transform.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/Translation.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/Umeyama.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Geometry/arch/Geometry_SSE.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Householder/BlockHouseholder.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Householder/Householder.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Householder/HouseholderSequence.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/Jacobi/Jacobi.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/LU/Determinant.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/LU/FullPivLU.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/LU/InverseImpl.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/LU/PartialPivLU.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/LU/arch/Inverse_SSE.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/MetisSupport/MetisSupport.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/OrderingMethods/Amd.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/OrderingMethods/Ordering.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/PardisoSupport/PardisoSupport.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/QR/ColPivHouseholderQR.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/QR/FullPivHouseholderQR.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/QR/HouseholderQR.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SVD/BDCSVD.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SVD/JacobiSVD.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SVD/SVDBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SVD/UpperBidiagonalization.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/AmbiVector.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/CompressedStorage.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/MappedSparseMatrix.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseAssign.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseBlock.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseColEtree.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseCompressedBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseDenseProduct.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseDot.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseFuzzy.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseMap.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseMatrix.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseMatrixBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparsePermutation.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseProduct.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseRedux.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseRef.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseSolverBase.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseTranspose.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseTriangularView.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseUtil.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseVector.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/SparseView.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseCore/TriangularSolver.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLUImpl.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_Memory.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_Structs.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_Utils.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_pivotL.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_pruneL.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SparseQR/SparseQR.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/StlSupport/StdDeque.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/StlSupport/StdList.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/StlSupport/StdVector.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/StlSupport/details.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/misc/Image.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/misc/Kernel.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/misc/RealSvd2x2.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/misc/blas.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/misc/lapack.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/misc/lapacke.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/misc/lapacke_mangling.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/plugins/BlockMethods.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +include/ITK-%%ITK_VER%%/itkeigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +include/ITK-%%ITK_VER%%/itkfdstream/fdstream.hxx include/ITK-%%ITK_VER%%/itkkwiml/abi.h include/ITK-%%ITK_VER%%/itkkwiml/int.h include/ITK-%%ITK_VER%%/itkminc2/ParseArgv.h @@ -3062,10 +3372,6 @@ include/ITK-%%ITK_VER%%/itksys/String.hxx include/ITK-%%ITK_VER%%/itksys/System.h include/ITK-%%ITK_VER%%/itksys/SystemInformation.hxx include/ITK-%%ITK_VER%%/itksys/SystemTools.hxx -include/ITK-%%ITK_VER%%/itksys/hash_fun.hxx -include/ITK-%%ITK_VER%%/itksys/hash_map.hxx -include/ITK-%%ITK_VER%%/itksys/hash_set.hxx -include/ITK-%%ITK_VER%%/itksys/hashtable.hxx include/ITK-%%ITK_VER%%/itkv3Rigid3DTransform.h include/ITK-%%ITK_VER%%/lapack/complex16/zdrscl.h include/ITK-%%ITK_VER%%/lapack/complex16/zgebak.h @@ -3237,7 +3543,6 @@ include/ITK-%%ITK_VER%%/linpack/zqrdc.h include/ITK-%%ITK_VER%%/linpack/zqrsl.h include/ITK-%%ITK_VER%%/linpack/zsvdc.h include/ITK-%%ITK_VER%%/localMetaConfiguration.h -include/ITK-%%ITK_VER%%/mathews/adaquad.h include/ITK-%%ITK_VER%%/mathews/simpson.h include/ITK-%%ITK_VER%%/mathews/trapezod.h include/ITK-%%ITK_VER%%/metaArray.h @@ -3253,7 +3558,6 @@ include/ITK-%%ITK_VER%%/metaForm.h include/ITK-%%ITK_VER%%/metaGaussian.h include/ITK-%%ITK_VER%%/metaGroup.h include/ITK-%%ITK_VER%%/metaIOConfig.h -include/ITK-%%ITK_VER%%/metaITKUtils.h include/ITK-%%ITK_VER%%/metaImage.h include/ITK-%%ITK_VER%%/metaImageTypes.h include/ITK-%%ITK_VER%%/metaImageUtils.h @@ -3261,7 +3565,6 @@ include/ITK-%%ITK_VER%%/metaLandmark.h include/ITK-%%ITK_VER%%/metaLine.h include/ITK-%%ITK_VER%%/metaMesh.h include/ITK-%%ITK_VER%%/metaObject.h -include/ITK-%%ITK_VER%%/metaOutput.h include/ITK-%%ITK_VER%%/metaScene.h include/ITK-%%ITK_VER%%/metaSurface.h include/ITK-%%ITK_VER%%/metaTransform.h @@ -3280,6 +3583,9 @@ include/ITK-%%ITK_VER%%/minpack/lmpar.h include/ITK-%%ITK_VER%%/minpack/qrfac.h include/ITK-%%ITK_VER%%/minpack/qrsolv.h include/ITK-%%ITK_VER%%/napack/cg.h +include/ITK-%%ITK_VER%%/nifti1.h +include/ITK-%%ITK_VER%%/nifti1_io.h +include/ITK-%%ITK_VER%%/nifti1_tool.h include/ITK-%%ITK_VER%%/openjpeg.h include/ITK-%%ITK_VER%%/openjpegDllConfig.h include/ITK-%%ITK_VER%%/openjpeg_mangle.h @@ -3288,6 +3594,7 @@ include/ITK-%%ITK_VER%%/opt/lbfgsb.h include/ITK-%%ITK_VER%%/sparse/spConfig.h include/ITK-%%ITK_VER%%/sparse/spDefs.h include/ITK-%%ITK_VER%%/sparse/spMatrix.h +include/ITK-%%ITK_VER%%/string-to-double.h include/ITK-%%ITK_VER%%/strtod.h include/ITK-%%ITK_VER%%/stub.h include/ITK-%%ITK_VER%%/temperton/dgpfa.h @@ -3301,7 +3608,6 @@ include/ITK-%%ITK_VER%%/temperton/gpfa5f.h include/ITK-%%ITK_VER%%/temperton/setdgpfa.h include/ITK-%%ITK_VER%%/temperton/setgpfa.h include/ITK-%%ITK_VER%%/toms/rpoly.h -include/ITK-%%ITK_VER%%/triangle.h include/ITK-%%ITK_VER%%/utils.h include/ITK-%%ITK_VER%%/v3p_f2c.h include/ITK-%%ITK_VER%%/v3p_f2c_mangle.h @@ -3579,7 +3885,6 @@ include/ITK-%%ITK_VER%%/vnl/vnl_sparse_matrix_linear_system.h include/ITK-%%ITK_VER%%/vnl/vnl_sse.h include/ITK-%%ITK_VER%%/vnl/vnl_sym_matrix.h include/ITK-%%ITK_VER%%/vnl/vnl_sym_matrix.hxx -include/ITK-%%ITK_VER%%/vnl/vnl_tag.h include/ITK-%%ITK_VER%%/vnl/vnl_trace.h include/ITK-%%ITK_VER%%/vnl/vnl_transpose.h include/ITK-%%ITK_VER%%/vnl/vnl_unary_function.h @@ -3594,11 +3899,15 @@ include/ITK-%%ITK_VER%%/vnl/vnl_vector_ref.h include/ITK-%%ITK_VER%%/vxl_config.h include/ITK-%%ITK_VER%%/vxl_copyright.h include/ITK-%%ITK_VER%%/vxl_version.h +include/ITK-%%ITK_VER%%/znzlib.h lib/cmake/ITK-%%ITK_VER%%/ITKConfig.cmake lib/cmake/ITK-%%ITK_VER%%/ITKConfigVersion.cmake lib/cmake/ITK-%%ITK_VER%%/ITKModuleAPI.cmake lib/cmake/ITK-%%ITK_VER%%/ITKTargets-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/ITK-%%ITK_VER%%/ITKTargets.cmake +lib/cmake/ITK-%%ITK_VER%%/Modules/Eigen3Config.cmake +lib/cmake/ITK-%%ITK_VER%%/Modules/Eigen3ConfigVersion.cmake +lib/cmake/ITK-%%ITK_VER%%/Modules/Eigen3Targets.cmake lib/cmake/ITK-%%ITK_VER%%/Modules/ITKAnisotropicSmoothing.cmake lib/cmake/ITK-%%ITK_VER%%/Modules/ITKAntiAlias.cmake lib/cmake/ITK-%%ITK_VER%%/Modules/ITKBiasCorrection.cmake @@ -3690,6 +3999,9 @@ lib/cmake/ITK-%%ITK_VER%%/Modules/ITKImageNoise.cmake lib/cmake/ITK-%%ITK_VER%%/Modules/ITKImageSources.cmake lib/cmake/ITK-%%ITK_VER%%/Modules/ITKImageStatistics.cmake lib/cmake/ITK-%%ITK_VER%%/Modules/ITKIntegratedTest.cmake +lib/cmake/ITK-%%ITK_VER%%/Modules/ITKInternalEigen3Config.cmake +lib/cmake/ITK-%%ITK_VER%%/Modules/ITKInternalEigen3ConfigVersion.cmake +lib/cmake/ITK-%%ITK_VER%%/Modules/ITKInternalEigen3Targets.cmake lib/cmake/ITK-%%ITK_VER%%/Modules/ITKJPEG.cmake lib/cmake/ITK-%%ITK_VER%%/Modules/ITKKLMRegionGrowing.cmake lib/cmake/ITK-%%ITK_VER%%/Modules/ITKKWIML.cmake @@ -3750,10 +4062,24 @@ lib/cmake/UseitkLIBMINC.cmake lib/cmake/itkLIBMINCConfig.cmake lib/libITKBiasCorrection-%%ITK_VER%%.so lib/libITKBiasCorrection-%%ITK_VER%%.so.1 +lib/libITKColormap-%%ITK_VER%%.so +lib/libITKColormap-%%ITK_VER%%.so.1 lib/libITKCommon-%%ITK_VER%%.so lib/libITKCommon-%%ITK_VER%%.so.1 +lib/libITKConvolution-%%ITK_VER%%.so +lib/libITKConvolution-%%ITK_VER%%.so.1 lib/libITKDICOMParser-%%ITK_VER%%.so lib/libITKDICOMParser-%%ITK_VER%%.so.1 +lib/libITKDeformableMesh-%%ITK_VER%%.so +lib/libITKDeformableMesh-%%ITK_VER%%.so.1 +lib/libITKDenoising-%%ITK_VER%%.so +lib/libITKDenoising-%%ITK_VER%%.so.1 +lib/libITKDiffusionTensorImage-%%ITK_VER%%.so +lib/libITKDiffusionTensorImage-%%ITK_VER%%.so.1 +lib/libITKFFT-%%ITK_VER%%.so +lib/libITKFFT-%%ITK_VER%%.so.1 +lib/libITKFastMarching-%%ITK_VER%%.so +lib/libITKFastMarching-%%ITK_VER%%.so.1 lib/libITKIOBMP-%%ITK_VER%%.so lib/libITKIOBMP-%%ITK_VER%%.so.1 lib/libITKIOBioRad-%%ITK_VER%%.so @@ -3828,10 +4154,18 @@ lib/libITKIOVTK-%%ITK_VER%%.so lib/libITKIOVTK-%%ITK_VER%%.so.1 lib/libITKIOXML-%%ITK_VER%%.so lib/libITKIOXML-%%ITK_VER%%.so.1 +lib/libITKImageFeature-%%ITK_VER%%.so +lib/libITKImageFeature-%%ITK_VER%%.so.1 +lib/libITKImageIntensity-%%ITK_VER%%.so +lib/libITKImageIntensity-%%ITK_VER%%.so.1 lib/libITKKLMRegionGrowing-%%ITK_VER%%.so lib/libITKKLMRegionGrowing-%%ITK_VER%%.so.1 lib/libITKLabelMap-%%ITK_VER%%.so lib/libITKLabelMap-%%ITK_VER%%.so.1 +lib/libITKMarkovRandomFieldsClassifiers-%%ITK_VER%%.so +lib/libITKMarkovRandomFieldsClassifiers-%%ITK_VER%%.so.1 +lib/libITKMathematicalMorphology-%%ITK_VER%%.so +lib/libITKMathematicalMorphology-%%ITK_VER%%.so.1 lib/libITKMesh-%%ITK_VER%%.so lib/libITKMesh-%%ITK_VER%%.so.1 lib/libITKMetaIO-%%ITK_VER%%.so @@ -3842,14 +4176,24 @@ lib/libITKOptimizers-%%ITK_VER%%.so lib/libITKOptimizers-%%ITK_VER%%.so.1 lib/libITKOptimizersv4-%%ITK_VER%%.so lib/libITKOptimizersv4-%%ITK_VER%%.so.1 +lib/libITKPDEDeformableRegistration-%%ITK_VER%%.so +lib/libITKPDEDeformableRegistration-%%ITK_VER%%.so.1 lib/libITKPath-%%ITK_VER%%.so lib/libITKPath-%%ITK_VER%%.so.1 lib/libITKPolynomials-%%ITK_VER%%.so lib/libITKPolynomials-%%ITK_VER%%.so.1 lib/libITKQuadEdgeMesh-%%ITK_VER%%.so lib/libITKQuadEdgeMesh-%%ITK_VER%%.so.1 +lib/libITKQuadEdgeMeshFiltering-%%ITK_VER%%.so +lib/libITKQuadEdgeMeshFiltering-%%ITK_VER%%.so.1 +lib/libITKRegionGrowing-%%ITK_VER%%.so +lib/libITKRegionGrowing-%%ITK_VER%%.so.1 +lib/libITKRegistrationMethodsv4-%%ITK_VER%%.so +lib/libITKRegistrationMethodsv4-%%ITK_VER%%.so.1 lib/libITKReview-%%ITK_VER%%.so lib/libITKReview-%%ITK_VER%%.so.1 +lib/libITKSmoothing-%%ITK_VER%%.so +lib/libITKSmoothing-%%ITK_VER%%.so.1 lib/libITKSpatialObjects-%%ITK_VER%%.so lib/libITKSpatialObjects-%%ITK_VER%%.so.1 lib/libITKStatistics-%%ITK_VER%%.so @@ -3884,8 +4228,6 @@ lib/libitklbfgs-%%ITK_VER%%.so lib/libitklbfgs-%%ITK_VER%%.so.1 lib/libitkminc2-%%ITK_VER%%.so lib/libitkminc2-%%ITK_VER%%.so.1 -lib/libitknetlib-%%ITK_VER%%.so -lib/libitknetlib-%%ITK_VER%%.so.1 lib/libitkopenjpeg-%%ITK_VER%%.so lib/libitkopenjpeg-%%ITK_VER%%.so.1 lib/libitksys-%%ITK_VER%%.so diff --git a/science/InsightToolkit501/Makefile b/science/InsightToolkit501/Makefile new file mode 100644 index 000000000000..3e4f0149f3c4 --- /dev/null +++ b/science/InsightToolkit501/Makefile @@ -0,0 +1,67 @@ +PORTNAME= InsightToolkit +PORTVERSION= 5.0.1 +DISTVERSIONPREFIX=v +CATEGORIES= science biology +MASTER_SITES= https://github.com/InsightSoftwareConsortium/ITK/releases/download/v5.0.1/:data +PKGNAMESUFFIX= 501 +DISTFILES= InsightData-5.0.1.tar.gz:data + +MAINTAINER= ports@FreeBSD.org +COMMENT= Insight Toolkit +WWW= https://www.itk.org + +LICENSE= APACHE20 + +BUILD_DEPENDS= googletest>=0:devel/googletest +LIB_DEPENDS= libgdcmCommon.so:devel/gdcm \ + libexpat.so:textproc/expat2 \ + libfftw.so:math/fftw \ + libhdf5.so:science/hdf5 \ + libpng.so:graphics/png \ + libsz.so:science/libaec \ + libtiff.so:graphics/tiff + +USES= cmake compiler:c++11-lang eigen:3 jpeg pkgconfig +USE_GITHUB= yes +GH_ACCOUNT= InsightSoftwareConsortium +GH_PROJECT= ITK +CMAKE_ARGS+= -DBUILD_SHARED_LIBS:BOOL=ON \ + -DITK_FORBID_DOWNLOADS:BOOL=ON \ + -DITK_LEGACY_SILENT:BOOL=ON \ + -DITK_USE_KWSTYLE:BOOL=OFF \ + -DITK_USE_SYSTEM_EXPAT:BOOL=ON \ + -DITK_USE_SYSTEM_FFTW:BOOL=ON \ + -DITK_USE_SYSTEM_GDCM:BOOL=ON \ + -DITK_USE_SYSTEM_HDF5:BOOL=ON \ + -DITK_USE_SYSTEM_JPEG:BOOL=ON \ + -DITK_USE_SYSTEM_LIBRARIES:BOOL=ON \ + -DITK_USE_SYSTEM_PNG:BOOL=ON \ + -DITK_USE_SYSTEM_TIFF:BOOL=ON \ + -DITK_USE_SYSTEM_ZLIB:BOOL=ON \ + -DModule_ITKIOMIC:BOOL=ON \ + -DModule_ITKIOTransformMINC:BOOL=ON \ + -DModule_ITKReview:BOOL=ON +USE_LDCONFIG= ${PREFIX}/lib/InsightToolkit +ITK_VER= ${PORTVERSION:R} +PLIST_SUB+= ITK_VER=${ITK_VER} + +OPTIONS_DEFINE= EXAMPLES TESTING +EXAMPLES_DESC= Build examples (very time consuming) +TESTING_DESC= Build testing programs (very time consuming) + +EXAMPLES_CMAKE_ON= -DBUILD_EXAMPLES:BOOL=ON +TESTING_CMAKE_ON= -DBUILD_TESTING:BOOL=ON + +.include + +.if ${CHOSEN_COMPILER_TYPE} == gcc +PLIST_SUB+= CHOSEN_COMPILER_TYPE="GNU" +.else +PLIST_SUB+= CHOSEN_COMPILER_TYPE="Clang" +.endif + +post-extract: + ${MV} ${WRKDIR}/${PORTNAME}-${PORTVERSION}/.ExternalData/* ${WRKSRC}/.ExternalData/ + ${RM} -r ${WRKDIR}/${PORTNAME}-${PORTVERSION} + +.include diff --git a/science/InsightToolkit501/distinfo b/science/InsightToolkit501/distinfo new file mode 100644 index 000000000000..7d133ee83f34 --- /dev/null +++ b/science/InsightToolkit501/distinfo @@ -0,0 +1,5 @@ +TIMESTAMP = 1564828215 +SHA256 (InsightData-5.0.1.tar.gz) = 5fc343de9ae8e5fd14ac743a8321f5fb699928c08bf8f426aab7835a92fc805e +SIZE (InsightData-5.0.1.tar.gz) = 290801718 +SHA256 (InsightSoftwareConsortium-ITK-v5.0.1_GH0.tar.gz) = c6b3c33ecc73104c906e0e1a1bfaa41a09af24bf53a4ec5e5c265d7e82bdf69f +SIZE (InsightSoftwareConsortium-ITK-v5.0.1_GH0.tar.gz) = 20881765 diff --git a/science/InsightToolkit501/files/patch-CMake_ITKModuleTest.cmake b/science/InsightToolkit501/files/patch-CMake_ITKModuleTest.cmake new file mode 100644 index 000000000000..014ed3718758 --- /dev/null +++ b/science/InsightToolkit501/files/patch-CMake_ITKModuleTest.cmake @@ -0,0 +1,10 @@ +--- CMake/ITKModuleTest.cmake.orig 2019-08-03 09:25:42 UTC ++++ CMake/ITKModuleTest.cmake +@@ -244,6 +244,7 @@ endfunction() *** 3985 LINES SKIPPED ***