git: 2c5f8b153e09 - main - biology/gatk: Use Java 17 instead of EOLed Java 12
Date: Tue, 24 May 2022 22:39:42 UTC
The branch main has been updated by yuri:
URL: https://cgit.FreeBSD.org/ports/commit/?id=2c5f8b153e090e52431cd867616f6a58dc73d1a5
commit 2c5f8b153e090e52431cd867616f6a58dc73d1a5
Author: Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2022-05-24 22:38:23 +0000
Commit: Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2022-05-24 22:39:38 +0000
biology/gatk: Use Java 17 instead of EOLed Java 12
---
biology/gatk/Makefile | 3 ++-
biology/gatk/distinfo | 6 +++---
2 files changed, 5 insertions(+), 4 deletions(-)
diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile
index 9e4672363cc2..2aeee40d3c31 100644
--- a/biology/gatk/Makefile
+++ b/biology/gatk/Makefile
@@ -1,5 +1,6 @@
PORTNAME= gatk
DISTVERSION= 4.2.6.1
+PORTREVISION= 1
CATEGORIES= biology java
EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX}
@@ -16,7 +17,7 @@ BUILD_DEPENDS= gradle:devel/gradle
USES= gettext-runtime
USE_JAVA= yes
-JAVA_VERSION= 12 # Java 8 fails on aarch64: Internal Error (assembler_aarch64.hpp:237), pid=76025, tid=0x000000000006e359 guarantee(val < (1U << nbits)) failed: Field too big for insn
+JAVA_VERSION= 17 # Java 8 fails on aarch64: Internal Error (assembler_aarch64.hpp:237), pid=76025, tid=0x000000000006e359 guarantee(val < (1U << nbits)) failed: Field too big for insn
USE_GITHUB= yes
GH_ACCOUNT= broadinstitute
diff --git a/biology/gatk/distinfo b/biology/gatk/distinfo
index 59042632fd71..12330837aa1a 100644
--- a/biology/gatk/distinfo
+++ b/biology/gatk/distinfo
@@ -1,5 +1,5 @@
-TIMESTAMP = 1653271029
-SHA256 (gatk-4.2.6.1-deps.tar.gz) = 29c953f5e4ced2c06115d0f1ec8a501a5f17d0ed07337654249732680851c880
-SIZE (gatk-4.2.6.1-deps.tar.gz) = 545446960
+TIMESTAMP = 1653429535
+SHA256 (gatk-4.2.6.1-deps.tar.gz) = 6973e6a8ba1292b14c8238d7c831b1d9998c770f0f515881ed335c1de58a5ca2
+SIZE (gatk-4.2.6.1-deps.tar.gz) = 545456297
SHA256 (broadinstitute-gatk-4.2.6.1_GH0.tar.gz) = 248cefeaf3ea62ad672ff6402d82631e8b85a03d019c29bbb44d842f799dda67
SIZE (broadinstitute-gatk-4.2.6.1_GH0.tar.gz) = 92503297