From nobody Fri Mar 25 16:39:57 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 3A0571A21DA0; Fri, 25 Mar 2022 16:39:58 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4KQ79V1BXVz3MqV; Fri, 25 Mar 2022 16:39:58 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1648226398; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=8KsD5rg73m6SxWNotbnNPu7Pl0DqIsbk1rDtuYiRSmU=; b=yhxAfqsXsT5R742yMHX1KZOq8WmM9zwQfYQMqyvMSivriMwaWjPfXtONBSk1v0meJuE80I DE475Pi/JcC4L+dK9iLVtKeQTDY4Huuin7JjiocjlgjDNTOa8kTxX+9JtOl1YQIAz5SoBI RilIc+attUGLNVuQxUTmMWjrnBJMzoH247o0C+Gl5iOxN0XVnD8WmbB+v2ksIgbWBQqgwD SMYkMyjEy626Ja7x/L1YMEj08XTnvkIVHekTQJnxW+mJxAh2znWpltkbuj5/Sa2DgRdM6y eozT8KM35eDoEEsIA7GJ+GLyHC6H5Nr7ZH/HEfpzHXlDZmLvbCHpTrXpm3IAyw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 08FC11040B; Fri, 25 Mar 2022 16:39:58 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 22PGdv7W062008; Fri, 25 Mar 2022 16:39:57 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 22PGdvBQ062007; Fri, 25 Mar 2022 16:39:57 GMT (envelope-from git) Date: Fri, 25 Mar 2022 16:39:57 GMT Message-Id: <202203251639.22PGdvBQ062007@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: fad5d1754c6c - main - biology/py-ont-fast5-api: Update to 4.0.2 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: fad5d1754c6cacc578077dfa752196f3db3271f7 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1648226398; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=8KsD5rg73m6SxWNotbnNPu7Pl0DqIsbk1rDtuYiRSmU=; b=eWKr/Ypdgawi+yiO+LyiM4HLewaGUfdzFqWPOBCQ6HQIdONKeb2WG3sZr/X1ITmqcxN4aw 9H+9BCCKOsyZP/zHW0OMhqEWLOPLYa2twcNmMyXsyDo+F9DjyzOz2Fg/7vCTJpiBWSgwQq CGu87p6A/swpfDQmqK+NTP8wbmj4gLJJ42Xv/3QIbAykXcqqbx89v0dAm9GB1d1l/s9xkw JNEVT7DvJIFe/EUxA8zwBujViI/7TTKtGvrSjwDESoL0IwCbCx08C5RmSrk1KQ7J9MiqWs tQZy7xPRc9PI2ashYSKDEzDW0rCSUB4NeU+Edqo/1kT9XEI5CnNKNW9ZL46jjg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1648226398; a=rsa-sha256; cv=none; b=qYuCq1bJQ6dNv5Kgy/WA/O94O7v7fx+mJjSPbki8Ud/LdtU2o0hwBhRr5w7GQtWcZXeCGK seImbJtq8WW1yxID1ZcfA8Nv4tIs2C3Va4DBCIRvQeDI8rwb431BXFkzWF0P1mhAVGBha2 779NqHME9FB1xJvQkt4NUjzUJjFkFx6PZg1LZx2YYlOasDRv8eQafrD5wE5qJTcI0QWg2J 4mTV2nziML6z5Xj1MQZRCCBtzBw+HkH9owwDJW4kcelSoAxdaCtiPabAc3bAFar3BrfcUJ SdfFmrYOoV3F8nYiLMoiPqthkuwAXzYOyIlZ9BePS4IH4BIxaLjGwNts64M3bA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=fad5d1754c6cacc578077dfa752196f3db3271f7 commit fad5d1754c6cacc578077dfa752196f3db3271f7 Author: Jason W. Bacon AuthorDate: 2022-03-25 16:37:29 +0000 Commit: Jason W. Bacon CommitDate: 2022-03-25 16:37:29 +0000 biology/py-ont-fast5-api: Update to 4.0.2 Minor bug fix release Also disabled install of test directory, which was not properly installed under the package subdir and caused a conflict as a result PR: 262759 --- biology/py-ont-fast5-api/Makefile | 4 ++-- biology/py-ont-fast5-api/distinfo | 6 +++--- biology/py-ont-fast5-api/files/patch-setup.py | 11 +++++++++++ 3 files changed, 16 insertions(+), 5 deletions(-) diff --git a/biology/py-ont-fast5-api/Makefile b/biology/py-ont-fast5-api/Makefile index d998d68a0e04..79879d97e612 100644 --- a/biology/py-ont-fast5-api/Makefile +++ b/biology/py-ont-fast5-api/Makefile @@ -1,6 +1,6 @@ PORTNAME= ont-fast5-api DISTVERSIONPREFIX= release_ -DISTVERSION= 4.0.0 +DISTVERSION= 4.0.2 CATEGORIES= biology python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -18,7 +18,7 @@ RUN_DEPENDS= ${PYNUMPY} \ TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pip>=0:devel/py-pip@${PY_FLAVOR} USES= python -USE_PYTHON= autoplist distutils +USE_PYTHON= autoplist concurrent distutils USE_GITHUB= yes GH_ACCOUNT= nanoporetech diff --git a/biology/py-ont-fast5-api/distinfo b/biology/py-ont-fast5-api/distinfo index 9156cd8912ef..d6298ee5ba57 100644 --- a/biology/py-ont-fast5-api/distinfo +++ b/biology/py-ont-fast5-api/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1628770827 -SHA256 (nanoporetech-ont_fast5_api-release_4.0.0_GH0.tar.gz) = 7f9b3fa0f814ff38c30e9cb21971ec61e2b3fd52fb166a8404c21bf25679e0ab -SIZE (nanoporetech-ont_fast5_api-release_4.0.0_GH0.tar.gz) = 4081125 +TIMESTAMP = 1648128656 +SHA256 (nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz) = c078dc0d20b02cd9807105415f259e099f1adc8b922d67a1a9fe04321c098361 +SIZE (nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz) = 4082466 diff --git a/biology/py-ont-fast5-api/files/patch-setup.py b/biology/py-ont-fast5-api/files/patch-setup.py new file mode 100644 index 000000000000..a29c7326d3b5 --- /dev/null +++ b/biology/py-ont-fast5-api/files/patch-setup.py @@ -0,0 +1,11 @@ +--- setup.py.orig 2022-03-25 16:23:32 UTC ++++ setup.py +@@ -35,7 +35,7 @@ setup(name=__pkg_name__.replace("_", "-"), + version=get_version(), + url='https://github.com/nanoporetech/{}'.format(__pkg_name__), + install_requires=installation_requirements, +- packages=find_packages(), ++ packages=find_packages(exclude=['test']), + package_data={__pkg_name__: ['vbz_plugin/*.so', 'vbz_plugin/*.dylib', 'vbz_plugin/*.dll']}, + python_requires='>=3.6', + entry_points={'console_scripts': [