git: b8604e856abf - main - biology/biolibc-tools: Update to 0.1.2
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Date: Tue, 15 Mar 2022 21:45:20 UTC
The branch main has been updated by jwb:
URL: https://cgit.FreeBSD.org/ports/commit/?id=b8604e856abfd2bce2cd31e86dc4693be4d38763
commit b8604e856abfd2bce2cd31e86dc4693be4d38763
Author: Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2022-03-15 21:36:49 +0000
Commit: Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2022-03-15 21:36:49 +0000
biology/biolibc-tools: Update to 0.1.2
New fastx-stats and ensembl2gene subcommands
Minor updates for biolibc 0.2.2 API changes
Minor bug fixes and ennancements
---
biology/biolibc-tools/Makefile | 3 ++-
biology/biolibc-tools/distinfo | 6 +++---
biology/biolibc-tools/pkg-plist | 4 ++++
3 files changed, 9 insertions(+), 4 deletions(-)
diff --git a/biology/biolibc-tools/Makefile b/biology/biolibc-tools/Makefile
index 4a63e3749e93..7cf0341514eb 100644
--- a/biology/biolibc-tools/Makefile
+++ b/biology/biolibc-tools/Makefile
@@ -1,7 +1,7 @@
# Created by: J. Bacon <jwb@FreeBSD.org>
PORTNAME= biolibc-tools
-DISTVERSION= 0.1.1
+DISTVERSION= 0.1.2
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@@ -12,6 +12,7 @@ LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= uthash>0:devel/uthash
LIB_DEPENDS= libbiolibc.so:biology/biolibc \
+ libxtend.so:devel/libxtend \
libxxhash.so:devel/xxhash
USE_GITHUB= yes
diff --git a/biology/biolibc-tools/distinfo b/biology/biolibc-tools/distinfo
index d3732ec6c333..e513f059cd26 100644
--- a/biology/biolibc-tools/distinfo
+++ b/biology/biolibc-tools/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1639495090
-SHA256 (auerlab-biolibc-tools-0.1.1_GH0.tar.gz) = 169ea4bbd70049d9e364e145db0ca4793da99202f12262e00485407cfbd2997b
-SIZE (auerlab-biolibc-tools-0.1.1_GH0.tar.gz) = 21700
+TIMESTAMP = 1647347831
+SHA256 (auerlab-biolibc-tools-0.1.2_GH0.tar.gz) = 817b3f88b1d83a28389dbbb43ef1e0d2c1fb3b7e72ca7151fa26a35058ef4558
+SIZE (auerlab-biolibc-tools-0.1.2_GH0.tar.gz) = 24610
diff --git a/biology/biolibc-tools/pkg-plist b/biology/biolibc-tools/pkg-plist
index f5fe188a60a8..b82ed3ef61dc 100644
--- a/biology/biolibc-tools/pkg-plist
+++ b/biology/biolibc-tools/pkg-plist
@@ -1,19 +1,23 @@
bin/blt
libexec/biolibc-tools/chrom-lens
+libexec/biolibc-tools/ensemblid2gene
libexec/biolibc-tools/extract-seq
libexec/biolibc-tools/fasta2seq
libexec/biolibc-tools/fastq-derep.sh
libexec/biolibc-tools/fastx-derep
+libexec/biolibc-tools/fastx-stats
libexec/biolibc-tools/fastx2tsv
libexec/biolibc-tools/find-orfs
libexec/biolibc-tools/gff2bed
libexec/biolibc-tools/uniq-seqs.awk
libexec/biolibc-tools/vcf-search
man/man1/blt-chrom-lens.1.gz
+man/man1/blt-ensemblid2gene.1.gz
man/man1/blt-extract-seq.1.gz
man/man1/blt-fasta2seq.1.gz
man/man1/blt-fastq-derep.sh.1.gz
man/man1/blt-fastx-derep.1.gz
+man/man1/blt-fastx-stats.1.gz
man/man1/blt-fastx2tsv.1.gz
man/man1/blt-find-orfs.1.gz
man/man1/blt-gff2bed.1.gz