git: 6e49c0444ea9 - main - science/netcdf: Update to 4.8.1
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Date: Mon, 07 Mar 2022 18:16:37 UTC
The branch main has been updated by sunpoet:
URL: https://cgit.FreeBSD.org/ports/commit/?id=6e49c0444ea9764f827f044f39494d9bb23a79e1
commit 6e49c0444ea9764f827f044f39494d9bb23a79e1
Author: Po-Chuan Hsieh <sunpoet@FreeBSD.org>
AuthorDate: 2022-03-07 17:50:51 +0000
Commit: Po-Chuan Hsieh <sunpoet@FreeBSD.org>
CommitDate: 2022-03-07 18:10:58 +0000
science/netcdf: Update to 4.8.1
- Update MASTER_SITES
- Bump PORTREVISION of dependent ports for shlib change
Changes: https://github.com/Unidata/netcdf-c/releases
---
databases/grass7/Makefile | 2 +-
databases/grass8/Makefile | 1 +
graphics/f3d/Makefile | 1 +
graphics/gdal/Makefile | 2 +-
graphics/gmt/Makefile | 1 +
graphics/grads/Makefile | 2 +-
graphics/opendx/Makefile | 2 +-
math/grace/Makefile | 2 +-
math/gri/Makefile | 2 +-
math/labplot/Makefile | 2 +-
math/mdal/Makefile | 1 +
math/moab/Makefile | 2 +-
math/octave-forge-netcdf/Makefile | 2 +-
math/p5-NetCDF/Makefile | 2 +-
math/vtk9/Makefile | 2 +-
science/eccodes/Makefile | 1 +
science/gnudatalanguage/Makefile | 2 +-
science/grib_api/Makefile | 2 +-
science/kst2/Makefile | 2 +-
science/minc2/Makefile | 2 +-
science/netcdf-cxx/Makefile | 2 +-
science/netcdf/Makefile | 6 +-
science/netcdf/distinfo | 6 +-
science/netcdf/files/patch-libdispatch_dfilter.c | 85 -------
science/netcdf/pkg-plist | 295 +++++++++++------------
science/py-netCDF4/Makefile | 1 +
science/rubygem-ruby-netcdf/Makefile | 2 +-
science/v_sim/Makefile | 2 +-
science/vmd/Makefile | 2 +-
29 files changed, 169 insertions(+), 267 deletions(-)
diff --git a/databases/grass7/Makefile b/databases/grass7/Makefile
index 51c5abffcabc..64d5aef845f5 100644
--- a/databases/grass7/Makefile
+++ b/databases/grass7/Makefile
@@ -2,7 +2,7 @@
PORTNAME= grass
PORTVERSION= 7.8.6
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= databases geography
MASTER_SITES= https://grass.osgeo.org/%SUBDIR%/ \
http://grass.cict.fr/%SUBDIR%/ \
diff --git a/databases/grass8/Makefile b/databases/grass8/Makefile
index c058933823cc..dfc2e75f3c4d 100644
--- a/databases/grass8/Makefile
+++ b/databases/grass8/Makefile
@@ -1,5 +1,6 @@
PORTNAME= grass
DISTVERSION= 8.0.1
+PORTREVISION= 1
CATEGORIES= databases geography
MASTER_SITES= https://grass.osgeo.org/%SUBDIR%/ \
http://grass.cict.fr/%SUBDIR%/ \
diff --git a/graphics/f3d/Makefile b/graphics/f3d/Makefile
index fd18feb7a80e..fabacf4568bf 100644
--- a/graphics/f3d/Makefile
+++ b/graphics/f3d/Makefile
@@ -1,6 +1,7 @@
PORTNAME= f3d
DISTVERSIONPREFIX= v
DISTVERSION= 1.2.1
+PORTREVISION= 1
CATEGORIES= graphics
MAINTAINER= yuri@FreeBSD.org
diff --git a/graphics/gdal/Makefile b/graphics/gdal/Makefile
index 55beb7ac62a0..0cfc7cac5cc5 100644
--- a/graphics/gdal/Makefile
+++ b/graphics/gdal/Makefile
@@ -2,7 +2,7 @@
PORTNAME= gdal
PORTVERSION= 3.4.1
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= graphics geography
MASTER_SITES= https://download.osgeo.org/gdal/${PORTVERSION}/ \
LOCAL/sunpoet
diff --git a/graphics/gmt/Makefile b/graphics/gmt/Makefile
index 2eee00fe76d2..bd56cb806e8d 100644
--- a/graphics/gmt/Makefile
+++ b/graphics/gmt/Makefile
@@ -1,5 +1,6 @@
PORTNAME= gmt
DISTVERSION= 6.3.0
+PORTREVISION= 1
CATEGORIES= graphics
MASTER_SITES= https://github.com/GenericMappingTools/${PORTNAME}/releases/download/${DISTVERSION}/
DISTNAME= ${PORTNAME}-${DISTVERSION}-src
diff --git a/graphics/grads/Makefile b/graphics/grads/Makefile
index 66134bacbf5f..a0f8e96c6b35 100644
--- a/graphics/grads/Makefile
+++ b/graphics/grads/Makefile
@@ -2,7 +2,7 @@
PORTNAME= grads
PORTVERSION= 1.9b4
-PORTREVISION= 15
+PORTREVISION= 16
CATEGORIES= graphics science math
MASTER_SITES= ftp://grads.iges.org/grads/1.9/:src \
ftp://cola.gmu.edu/grads/1.9/:src \
diff --git a/graphics/opendx/Makefile b/graphics/opendx/Makefile
index 207725ea7181..11e874d81b99 100644
--- a/graphics/opendx/Makefile
+++ b/graphics/opendx/Makefile
@@ -2,7 +2,7 @@
PORTNAME= opendx
PORTVERSION= 4.4.4
-PORTREVISION= 34
+PORTREVISION= 35
CATEGORIES= graphics math java
MASTER_SITES= http://www.sfr-fresh.com/unix/misc/
DISTNAME= dx-${PORTVERSION}
diff --git a/math/grace/Makefile b/math/grace/Makefile
index ef03e1af1f4f..4cd34d2bd6dd 100644
--- a/math/grace/Makefile
+++ b/math/grace/Makefile
@@ -2,7 +2,7 @@
PORTNAME= grace
PORTVERSION= 5.1.25
-PORTREVISION= 7
+PORTREVISION= 8
CATEGORIES= math print
MASTER_SITES= ftp://ftp.fu-berlin.de/unix/graphics/grace/src/stable/ \
ftp://ftp.ntua.gr/pub/graphics/grace/src/stable/ \
diff --git a/math/gri/Makefile b/math/gri/Makefile
index 5c887edc0cf1..7560e345c0b7 100644
--- a/math/gri/Makefile
+++ b/math/gri/Makefile
@@ -2,7 +2,7 @@
PORTNAME= gri
PORTVERSION= 2.12.23
-PORTREVISION= 10
+PORTREVISION= 11
CATEGORIES= math
MASTER_SITES= SF
diff --git a/math/labplot/Makefile b/math/labplot/Makefile
index bea2798a1114..db13fdd64f1b 100644
--- a/math/labplot/Makefile
+++ b/math/labplot/Makefile
@@ -2,7 +2,7 @@
PORTNAME= labplot
DISTVERSION= 2.8.2
-PORTREVISION= 11
+PORTREVISION= 12
CATEGORIES= math kde
MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION}
diff --git a/math/mdal/Makefile b/math/mdal/Makefile
index 6f7f5168898f..1b280305dff2 100644
--- a/math/mdal/Makefile
+++ b/math/mdal/Makefile
@@ -2,6 +2,7 @@
PORTNAME= mdal
DISTVERSION= 0.9.0
+PORTREVISION= 1
CATEGORIES= math geography
MAINTAINER= wen@FreeBSD.org
diff --git a/math/moab/Makefile b/math/moab/Makefile
index fe304bc38ad6..e19c83e9f646 100644
--- a/math/moab/Makefile
+++ b/math/moab/Makefile
@@ -1,6 +1,6 @@
PORTNAME= moab
DISTVERSION= 5.2.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math
MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/get/${BB_COMMIT}.tar.gz?dummy=/
diff --git a/math/octave-forge-netcdf/Makefile b/math/octave-forge-netcdf/Makefile
index bde3050a60a9..d88caee3f5d7 100644
--- a/math/octave-forge-netcdf/Makefile
+++ b/math/octave-forge-netcdf/Makefile
@@ -2,7 +2,7 @@
PORTNAME= octave-forge-netcdf
PORTVERSION= 1.0.14
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= math
MAINTAINER= stephen@FreeBSD.org
diff --git a/math/p5-NetCDF/Makefile b/math/p5-NetCDF/Makefile
index 7b15f1db82f4..e861cb573896 100644
--- a/math/p5-NetCDF/Makefile
+++ b/math/p5-NetCDF/Makefile
@@ -2,7 +2,7 @@
PORTNAME= NetCDF
PORTVERSION= 1.2.4
-PORTREVISION= 7
+PORTREVISION= 8
CATEGORIES= math perl5
MASTER_SITES= ftp://ftp.unidata.ucar.edu/pub/netcdf-perl/
PKGNAMEPREFIX= p5-
diff --git a/math/vtk9/Makefile b/math/vtk9/Makefile
index debd1f583cd2..32075f4a1377 100644
--- a/math/vtk9/Makefile
+++ b/math/vtk9/Makefile
@@ -1,6 +1,6 @@
PORTNAME= vtk
DISTVERSION= 9.1.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math graphics
MASTER_SITES= https://vtk.org/files/release/${VTK_SHORT_VER}/
PKGNAMESUFFIX= 9
diff --git a/science/eccodes/Makefile b/science/eccodes/Makefile
index 3c0b9f193517..6608f00230b7 100644
--- a/science/eccodes/Makefile
+++ b/science/eccodes/Makefile
@@ -2,6 +2,7 @@
PORTNAME= eccodes
PORTVERSION= 2.24.2
+PORTREVISION= 1
DISTVERSIONSUFFIX= -Source
CATEGORIES= science
MASTER_SITES= https://confluence.ecmwf.int/download/attachments/45757960/ \
diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index fd8cf2814893..38089180b737 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gnudatalanguage
PORTVERSION= 1.0.1
DISTVERSIONPREFIX= v
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science lang
.if defined(BUILD_PYTHON_MODULE)
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/grib_api/Makefile b/science/grib_api/Makefile
index eba95db0dbfb..871f9e667ccb 100644
--- a/science/grib_api/Makefile
+++ b/science/grib_api/Makefile
@@ -3,7 +3,7 @@
PORTNAME= grib_api
PORTVERSION= 1.28.0
DISTVERSIONSUFFIX= -Source
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
MASTER_SITES= https://confluence.ecmwf.int/download/attachments/3473437/ \
LOCAL/sunpoet
diff --git a/science/kst2/Makefile b/science/kst2/Makefile
index 4347162eb2f0..16b6c48a3c5e 100644
--- a/science/kst2/Makefile
+++ b/science/kst2/Makefile
@@ -2,7 +2,7 @@
PORTNAME= kst
DISTVERSION= ${KST_VERSION}.${KST_DATE}
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
MAINTAINER= makc@FreeBSD.org
diff --git a/science/minc2/Makefile b/science/minc2/Makefile
index ceefcdba3659..31d6b638c888 100644
--- a/science/minc2/Makefile
+++ b/science/minc2/Makefile
@@ -3,7 +3,7 @@
PORTNAME= minc
PORTVERSION= 2.2.00
DISTVERSIONPREFIX= release-
-PORTREVISION= 10
+PORTREVISION= 11
PORTEPOCH= 1
CATEGORIES= science biology
PKGNAMESUFFIX= 2
diff --git a/science/netcdf-cxx/Makefile b/science/netcdf-cxx/Makefile
index eaf7bbc67a14..b3e5807cf074 100644
--- a/science/netcdf-cxx/Makefile
+++ b/science/netcdf-cxx/Makefile
@@ -2,7 +2,7 @@
PORTNAME= netcdf-cxx
PORTVERSION= 4.3.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= https://www.unidata.ucar.edu/downloads/netcdf/ftp/ \
ftp://ftp.unidata.ucar.edu/pub/netcdf/ \
diff --git a/science/netcdf/Makefile b/science/netcdf/Makefile
index ba449436986e..01df33791388 100644
--- a/science/netcdf/Makefile
+++ b/science/netcdf/Makefile
@@ -1,11 +1,10 @@
# Created by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
PORTNAME= netcdf
-PORTVERSION= 4.7.4
+PORTVERSION= 4.8.1
DISTVERSIONPREFIX= c-
CATEGORIES= science
-MASTER_SITES= https://www.unidata.ucar.edu/downloads/netcdf/ftp/ \
- ftp://ftp.unidata.ucar.edu/pub/netcdf/ \
+MASTER_SITES= https://downloads.unidata.ucar.edu/netcdf-c/${PORTVERSION}/ \
LOCAL/sunpoet
MAINTAINER= sunpoet@FreeBSD.org
@@ -24,6 +23,7 @@ CONFIGURE_ARGS= --disable-filter-testing \
CPPFLAGS+= -fPIC -DPIC
GNU_CONFIGURE= yes
INSTALL_TARGET= install-strip
+LIBS+= -lexecinfo
TEST_TARGET= check
USE_LDCONFIG= yes
diff --git a/science/netcdf/distinfo b/science/netcdf/distinfo
index ddac32f281d6..b5f18cf1723f 100644
--- a/science/netcdf/distinfo
+++ b/science/netcdf/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1585412011
-SHA256 (netcdf-c-4.7.4.tar.gz) = 0e476f00aeed95af8771ff2727b7a15b2de353fb7bb3074a0d340b55c2bd4ea8
-SIZE (netcdf-c-4.7.4.tar.gz) = 5999520
+TIMESTAMP = 1646064581
+SHA256 (netcdf-c-4.8.1.tar.gz) = 808ac326ddecc8e0bb70f3ba35747fd6907f2b446817ce1465219974abe472b1
+SIZE (netcdf-c-4.8.1.tar.gz) = 6602964
diff --git a/science/netcdf/files/patch-libdispatch_dfilter.c b/science/netcdf/files/patch-libdispatch_dfilter.c
deleted file mode 100644
index 52d3b303b96f..000000000000
--- a/science/netcdf/files/patch-libdispatch_dfilter.c
+++ /dev/null
@@ -1,85 +0,0 @@
---- libdispatch/dfilter.c.orig 2021-02-15 16:07:29 UTC
-+++ libdispatch/dfilter.c
-@@ -358,6 +358,42 @@ done:
- return stat;
- }
-
-+
-+#ifdef WORDS_BIGENDIAN
-+/* Byte swap an 8-byte integer in place */
-+static void
-+byteswap8(unsigned char* mem)
-+{
-+ unsigned char c;
-+ c = mem[0];
-+ mem[0] = mem[7];
-+ mem[7] = c;
-+ c = mem[1];
-+ mem[1] = mem[6];
-+ mem[6] = c;
-+ c = mem[2];
-+ mem[2] = mem[5];
-+ mem[5] = c;
-+ c = mem[3];
-+ mem[3] = mem[4];
-+ mem[4] = c;
-+}
-+
-+/* Byte swap an 8-byte integer in place */
-+static void
-+byteswap4(unsigned char* mem)
-+{
-+ unsigned char c;
-+ c = mem[0];
-+ mem[0] = mem[3];
-+ mem[3] = c;
-+ c = mem[1];
-+ mem[1] = mem[2];
-+ mem[2] = c;
-+}
-+#endif
-+
-+
- EXTERNL void
- NC4_filterfix8(unsigned char* mem, int decode)
- {
-@@ -674,39 +710,3 @@ gettype(const int q0, const int q1, int* isunsignedp)
- if(isunsignedp) *isunsignedp = isunsigned;
- return type;
- }
--
--#ifdef WORDS_BIGENDIAN
--/* Byte swap an 8-byte integer in place */
--static void
--byteswap8(unsigned char* mem)
--{
-- unsigned char c;
-- c = mem[0];
-- mem[0] = mem[7];
-- mem[7] = c;
-- c = mem[1];
-- mem[1] = mem[6];
-- mem[6] = c;
-- c = mem[2];
-- mem[2] = mem[5];
-- mem[5] = c;
-- c = mem[3];
-- mem[3] = mem[4];
-- mem[4] = c;
--}
--
--/* Byte swap an 8-byte integer in place */
--static void
--byteswap4(unsigned char* mem)
--{
-- unsigned char c;
-- c = mem[0];
-- mem[0] = mem[3];
-- mem[3] = c;
-- c = mem[1];
-- mem[1] = mem[2];
-- mem[2] = c;
--}
--#endif
--
--
diff --git a/science/netcdf/pkg-plist b/science/netcdf/pkg-plist
index 8036e271b045..3c2cea39f456 100644
--- a/science/netcdf/pkg-plist
+++ b/science/netcdf/pkg-plist
@@ -1,19 +1,22 @@
bin/nc-config
+bin/nc4print
bin/nccopy
bin/ncdump
bin/ncgen
bin/ncgen3
+bin/ocprint
include/netcdf.h
include/netcdf_aux.h
include/netcdf_dispatch.h
include/netcdf_filter.h
+include/netcdf_filter_build.h
include/netcdf_mem.h
include/netcdf_meta.h
lib/libnetcdf.a
lib/libnetcdf.settings
lib/libnetcdf.so
-lib/libnetcdf.so.18
-lib/libnetcdf.so.18.0.0
+lib/libnetcdf.so.19
+lib/libnetcdf.so.19.0.1
libdata/pkgconfig/netcdf.pc
man/man1/nccopy.1.gz
man/man1/ncdump.1.gz
@@ -25,7 +28,6 @@ man/man3/netcdf.3.gz
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/RELEASE_NOTES.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/accessing_subsets.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/annotated.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/annotated.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/architecture.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/attribute_conventions.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/bc_s.png
@@ -117,7 +119,6 @@ man/man3/netcdf.3.gz
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/files_dup.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/fill_values.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/filter__example_8c.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/filter__example_8c.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/filter__example_8c_source.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/folderclosed.png
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/folderopen.png
@@ -166,12 +167,6 @@ man/man3/netcdf.3.gz
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/group__variables.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/group__variables.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/groups.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/hdf5cache_8c.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/hdf5cache_8c.js
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/hdf5cache_8c_source.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/hdf5file_8c.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/hdf5file_8c.js
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/hdf5file_8c_source.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/index.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/index.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/indexing_8dox.html
@@ -196,27 +191,18 @@ man/man3/netcdf.3.gz
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/navtreeindex2.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/navtreeindex3.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/navtreeindex4.js
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/navtreeindex5.js
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/navtreeindex6.js
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/navtreeindex7.js
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/navtreeindex8.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc-classic-uml.png
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc-error-codes.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4-model.png
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4attr_8c.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4attr_8c.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4attr_8c_source.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4dim_8c.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4dim_8c.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4dim_8c_source.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4dispatch_8c.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4dispatch_8c.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4dispatch_8c_source.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4grp_8c.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4grp_8c.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4grp_8c_source.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4hdf_8c.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4hdf_8c.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4hdf_8c_source.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4info_8c.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4info_8c.js
@@ -225,10 +211,8 @@ man/man3/netcdf.3.gz
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4internal_8c.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4internal_8c_source.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4type_8c.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4type_8c.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4type_8c_source.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4var_8c.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4var_8c.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/nc4var_8c_source.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/ncatts.png
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/ncfunc_8c_source.html
@@ -237,11 +221,9 @@ man/man3/netcdf.3.gz
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/netcdf_8h.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/netcdf_8h.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/netcdf_8h_source.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/netcdf_8h_structnc__vlen__t.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/netcdf__mem_8h.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/netcdf__mem_8h.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/netcdf__mem_8h_source.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/netcdf__mem_8h_structNC__memio.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/netcdf__par_8h.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/netcdf__par_8h.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/netcdf__par_8h_source.html
@@ -253,10 +235,8 @@ man/man3/netcdf.3.gz
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/pages.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/parallel_io.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/pres__temp__4D__rd_8c.html
-%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/pres__temp__4D__rd_8c.js
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/pres__temp__4D__rd_8c_source.html
%%DOXYGEN%%%%PORTDOCS%%%%DOCSDIR%%/pres__temp__4D__wr_8c.html
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@@ -455,3 +425,14 @@ man/man3/netcdf.3.gz
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diff --git a/science/py-netCDF4/Makefile b/science/py-netCDF4/Makefile
index a5c30bcd6c17..b6dd4bc9e40f 100644
--- a/science/py-netCDF4/Makefile
+++ b/science/py-netCDF4/Makefile
@@ -2,6 +2,7 @@
PORTNAME= netCDF4
PORTVERSION= 1.5.8
+PORTREVISION= 1
DISTVERSIONPREFIX= v
DISTVERSIONSUFFIX= rel
CATEGORIES= science python
diff --git a/science/rubygem-ruby-netcdf/Makefile b/science/rubygem-ruby-netcdf/Makefile
index dd6b5d2a4d88..596236475afd 100644
--- a/science/rubygem-ruby-netcdf/Makefile
+++ b/science/rubygem-ruby-netcdf/Makefile
@@ -2,7 +2,7 @@
PORTNAME= ruby-netcdf
PORTVERSION= 0.7.2
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science rubygems
MASTER_SITES= RG
diff --git a/science/v_sim/Makefile b/science/v_sim/Makefile
index d08276c6af72..5f811443cfcd 100644
--- a/science/v_sim/Makefile
+++ b/science/v_sim/Makefile
@@ -2,7 +2,7 @@
PORTNAME= v_sim
PORTVERSION= 3.8.0
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= https://gitlab.com/l_sim/${PORTNAME}/-/archive/${PORTVERSION}/
diff --git a/science/vmd/Makefile b/science/vmd/Makefile
index aeef7e029364..c352e142ec87 100644
--- a/science/vmd/Makefile
+++ b/science/vmd/Makefile
@@ -2,7 +2,7 @@
PORTNAME= vmd
DISTVERSION= 1.9.3
-PORTREVISION= 10
+PORTREVISION= 11
CATEGORIES= science graphics python tcl tk
MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b6/:tachyon \
http://www.photonlimited.com/~johns/tachyon/files/0.99b6/:tachyon \