git: 36f5f5636bfc - main - devel/py-pyina: Remove accidentally-added files
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Date: Tue, 21 Jun 2022 18:08:33 UTC
The branch main has been updated by sunpoet:
URL: https://cgit.FreeBSD.org/ports/commit/?id=36f5f5636bfc357c48e1d278fb8f76de3cc5c89c
commit 36f5f5636bfc357c48e1d278fb8f76de3cc5c89c
Author: Po-Chuan Hsieh <sunpoet@FreeBSD.org>
AuthorDate: 2022-06-21 18:08:24 +0000
Commit: Po-Chuan Hsieh <sunpoet@FreeBSD.org>
CommitDate: 2022-06-21 18:08:24 +0000
devel/py-pyina: Remove accidentally-added files
---
devel/py-pyina/1l | 35 -----
devel/py-pyina/1q | 5 -
devel/py-pyina/1s | 397 ------------------------------------------------------
devel/py-pyina/1t | 4 -
4 files changed, 441 deletions(-)
diff --git a/devel/py-pyina/1l b/devel/py-pyina/1l
deleted file mode 100644
index 5a80dd78c125..000000000000
--- a/devel/py-pyina/1l
+++ /dev/null
@@ -1,35 +0,0 @@
-Copyright (c) 2004-2016 California Institute of Technology.
-Copyright (c) 2016-2021 The Uncertainty Quantification Foundation.
-All rights reserved.
-
-This software is available subject to the conditions and terms laid
-out below. By downloading and using this software you are agreeing
-to the following conditions.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions
-are met::
-
- - Redistribution of source code must retain the above copyright
- notice, this list of conditions and the following disclaimer.
-
- - Redistribution in binary form must reproduce the above copyright
- notice, this list of conditions and the following disclaimer in the
- documentations and/or other materials provided with the distribution.
-
- - Neither the names of the copyright holders nor the names of any of
- the contributors may be used to endorse or promote products derived
- from this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
-"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
-TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
-PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
-CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
-EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
-OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
-OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
-ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
diff --git a/devel/py-pyina/1q b/devel/py-pyina/1q
deleted file mode 100644
index 9eefd6db79ea..000000000000
--- a/devel/py-pyina/1q
+++ /dev/null
@@ -1,5 +0,0 @@
-numpy<1.20.0,>=1.0
-mpi4py!=3.0.2,>=1.3
-dill>=0.3.4
-pox>=0.3.0
-pathos>=0.2.8
diff --git a/devel/py-pyina/1s b/devel/py-pyina/1s
deleted file mode 100644
index e21226f4643d..000000000000
--- a/devel/py-pyina/1s
+++ /dev/null
@@ -1,397 +0,0 @@
-#!/usr/bin/env python
-#
-# Author: Mike McKerns (mmckerns @caltech and @uqfoundation)
-# Copyright (c) 1997-2016 California Institute of Technology.
-# Copyright (c) 2016-2021 The Uncertainty Quantification Foundation.
-# License: 3-clause BSD. The full license text is available at:
-# - https://github.com/uqfoundation/pyina/blob/master/LICENSE
-
-import os
-import sys
-# drop support for older python
-unsupported = None
-if sys.version_info < (2, 7):
- unsupported = 'Versions of Python before 2.7 are not supported'
-elif (3, 0) <= sys.version_info < (3, 6):
- unsupported = 'Versions of Python before 3.6 are not supported'
-if unsupported:
- raise ValueError(unsupported)
-
-# set version numbers
-stable_version = '0.2.5'
-target_version = '0.2.5'
-is_release = stable_version == target_version
-
-# check if easy_install is available
-try:
-# import __force_distutils__ #XXX: uncomment to force use of distutills
- from setuptools import setup, dist
- has_setuptools = True
-except ImportError:
- from distutils.core import setup
- has_setuptools = False
-
-# generate version number
-if os.path.exists('pyina/info.py'):
- # is a source distribution, so use existing version
- os.chdir('pyina')
- with open('info.py','r') as f:
- f.readline() # header
- this_version = f.readline().split()[-1].strip("'")
- os.chdir('..')
-elif stable_version == target_version:
- # we are building a stable release
- this_version = target_version
-else:
- # we are building a distribution
- this_version = target_version + '.dev0'
- if is_release:
- from datetime import date
- today = "".join(date.isoformat(date.today()).split('-'))
- this_version += "-" + today
-
-# get the license info
-with open('LICENSE') as file:
- license_text = file.read()
-
-# generate the readme text
-long_description = \
-"""----------------------------------------------
-pyina: MPI parallel map and cluster scheduling
-----------------------------------------------
-
-About Pyina
-===========
-
-The ``pyina`` package provides several basic tools to make MPI-based
-parallel computing more accessable to the end user. The goal
-of ``pyina`` is to allow the user to extend their own code to MPI-based
-parallel computing with minimal refactoring.
-
-The central element of ``pyina`` is the parallel map algorithm.
-``pyina`` currently provides two strategies for executing the parallel-map,
-where a strategy is the algorithm for distributing the work list of
-jobs across the availble nodes. These strategies can be used *"in-the-raw"*
-(i.e. directly) to provide the map algorithm to a user's own mpi-aware code.
-Further, in ``pyina.mpi`` ``pyina`` provides pipe and map implementations
-(known as *"easy map"*) that hide the MPI internals from the user. With the
-*"easy map"*, the user can launch their code in parallel batch mode -- using
-standard python and without ever having to write a line of MPI code.
-
-There are several ways that a user would typically launch their code in
-parallel -- directly with ``mpirun`` or ``mpiexec``, or through the use of a
-scheduler such as *torque* or *slurm*. ``pyina`` encapsulates several of these
-*"launchers"*, and provides a common interface to the different methods of
-launching a MPI job.
-
-``pyina`` is part of ``pathos``, a python framework for heterogeneous computing.
-``pyina`` is in active development, so any user feedback, bug reports, comments,
-or suggestions are highly appreciated. A list of issues is located at https://github.com/uqfoundation/pyina/issues, with a legacy list maintained at https://uqfoundation.github.io/project/pathos/query.
-
-
-Major Features
-==============
-
-``pyina`` provides a highly configurable parallel map interface
-to running MPI jobs, with:
-
- - a map interface that extends the python ``map`` standard
- - the ability to submit batch jobs to a selection of schedulers
- - the ability to customize node and process launch configurations
- - the ability to launch parallel MPI jobs with standard python
- - ease in selecting different strategies for processing a work list
-
-
-Current Release
-===============
-
-This documentation is for version ``pyina-%(thisver)s``.
-
-The latest released version of ``pyina`` is available at:
-
- https://pypi.org/project/pyina
-
-``pyina`` is distributed under a 3-clause BSD license.
-
- >>> import pyina
- >>> pyina.license()
-
-
-Development Version
-===================
-
-You can get the latest development version with all the shiny new features at:
-
- https://github.com/uqfoundation
-
-If you have a new contribution, please submit a pull request.
-
-
-Installation
-============
-
-``pyina`` is packaged to install from source, so you must
-download the tarball, unzip, and run the installer::
-
- [download]
- $ tar -xvzf pyina-%(relver)s.tar.gz
- $ cd pyina-%(relver)s
- $ python setup py build
- $ python setup py install
-
-You will be warned of any missing dependencies and/or settings after
-you run the "build" step above. ``pyina`` depends on ``dill``, ``pox``, ``pathos``, and
-``mpi4py``, so you should install them first. A version of MPI must also be
-installed. Launchers in ``pyina`` that submit to a scheduler will throw errors
-if the underlying scheduler is not available, however a scheduler is not
-required for ``pyina`` to execute.
-
-Alternately, ``pyina`` can be installed with ``pip`` or ``easy_install``::
-
- $ pip install pyina
-
-
-Requirements
-============
-
-``pyina`` requires:
-
- - ``python``, **version == 2.7** or **version >= 3.6**, or ``pypy``
- - ``numpy``, **version >= 1.0**
- - ``mpi4py``, **version >= 1.3**
- - ``dill``, **version >= 0.3.4**
- - ``pox``, **version >= 0.3.0**
- - ``pathos``, **version >= 0.2.8**
-
-Optional requirements:
-
- - ``setuptools``, **version >= 0.6**
- - ``mystic``, **version >= 0.3.7**
-
-
-More Information
-================
-
-Probably the best way to get started is to look at the documentation at
-http://pyina.rtfd.io. Also see ``pyina.examples`` and ``pyina.tests``
-for a set of scripts that demonstrate the configuration and launching of
-mpi-based parallel jobs using the *"easy map"* interface. Also see
-``pyina.examples_other`` for a set of scripts that test the more raw
-internals of ``pyina``. You can run the tests with ``python -m pyina.tests``.
-A script is included for querying, setting up, and tearing down an MPI
-environment, see ``python -m pyina`` for more information. The source code
-is generally well documented, so further questions may be resolved by
-inspecting the code itself. Please feel free to submit a ticket on github,
-or ask a question on stackoverflow (**@Mike McKerns**).
-If you would like to share how you use ``pyina`` in your work, please send
-an email (to **mmckerns at uqfoundation dot org**).
-
-Important classes and functions are found here:
-
- - ``pyina.mpi`` [the map API definition]
- - ``pyina.schedulers`` [all available schedulers]
- - ``pyina.launchers`` [all available launchers]
-
-Mapping strategies are found here:
-
- - ``pyina.mpi_scatter`` [the scatter-gather strategy]
- - ``pyina.mpi_pool`` [the worker pool strategy]
-
-``pyina`` also provides a convience script that helps navigate the
-MPI environment. This script can be run from anywhere with::
-
- $ mpi_world
-
-If may also be convienent to set a shell alias for the launch of 'raw'
-mpi-python jobs. Set something like the following (for bash)::
-
- $ alias mpython1='mpiexec -np 1 `which python`'
- $ alias mpython2='mpiexec -np 2 `which python`'
- $ ...
-
-
-Citation
-========
-
-If you use ``pyina`` to do research that leads to publication, we ask that you
-acknowledge use of ``pyina`` by citing the following in your publication::
-
- M.M. McKerns, L. Strand, T. Sullivan, A. Fang, M.A.G. Aivazis,
- "Building a framework for predictive science", Proceedings of
- the 10th Python in Science Conference, 2011;
- http://arxiv.org/pdf/1202.1056
-
- Michael McKerns and Michael Aivazis,
- "pathos: a framework for heterogeneous computing", 2010- ;
- https://uqfoundation.github.io/project/pathos
-
-Please see https://uqfoundation.github.io/project/pathos or
-http://arxiv.org/pdf/1202.1056 for further information.
-
-""" % {'relver' : stable_version, 'thisver' : this_version}
-
-# write readme file
-with open('README', 'w') as file:
- file.write(long_description)
-
-# generate 'info' file contents
-def write_info_py(filename='pyina/info.py'):
- contents = """# THIS FILE GENERATED FROM SETUP.PY
-this_version = '%(this_version)s'
-stable_version = '%(stable_version)s'
-readme = '''%(long_description)s'''
-license = '''%(license_text)s'''
-"""
- with open(filename, 'w') as file:
- file.write(contents % {'this_version' : this_version,
- 'stable_version' : stable_version,
- 'long_description' : long_description,
- 'license_text' : license_text })
- return
-
-# write info file
-write_info_py()
-
-# platform-specific instructions
-sdkroot_set = False
-from sys import platform
-if platform[:3] == 'win':
- pass
-else: #platform = linux or mac
- if platform[:6] == 'darwin':
- # mpi4py has difficulty building on a Mac
- # see special installation instructions here:
- # http://mpi4py.scipy.org/docs/usrman/install.html
- import os
- try:
- sdkroot = os.environ['SDKROOT']
- except KeyError:
- sdkroot = '/'
- os.environ['SDKROOT'] = sdkroot
- sdkroot_set = True
- pass
- pass
-
-# build the 'setup' call
-setup_code = """
-setup(name="pyina",
- version='%s',
- description="MPI parallel map and cluster scheduling",
- long_description = '''%s''',
- author = 'Mike McKerns',
- maintainer = 'Mike McKerns',
- license = '3-clause BSD',
- platforms = ['Linux', 'Mac'],
- url = 'https://github.com/uqfoundation/pyina',
- download_url = 'https://github.com/uqfoundation/pyina/archive/master.zip',
- classifiers = ['Development Status :: 5 - Production/Stable',
- 'Intended Audience :: Developers',
- 'Intended Audience :: Science/Research',
- 'License :: OSI Approved :: BSD License',
- 'Programming Language :: Python :: 2',
- 'Programming Language :: Python :: 2.7',
- 'Programming Language :: Python :: 3',
- 'Programming Language :: Python :: 3.6',
- 'Programming Language :: Python :: 3.7',
- 'Programming Language :: Python :: 3.8',
- 'Programming Language :: Python :: 3.9',
- 'Topic :: Scientific/Engineering',
- 'Topic :: Software Development'],
-
- packages=['pyina','pyina.tests'],
- package_dir={'pyina':'pyina','pyina.tests':'tests'},
-""" % (target_version, long_description)
-
-# add dependencies
-from sys import version_info
-sysversion = version_info[:2]
-try:
- import ctypes # if using `pypy`, pythonapi is not found
- IS_PYPY = not hasattr(ctypes, 'pythonapi')
- IS_PYPY2 = IS_PYPY and sysversion < (3,0)
-except:
- IS_PYPY = False
- IS_PYPY2 = False
-if sysversion < (2,6) or sysversion == (3,0) or sysversion == (3,1):
- numpy_version = '>=1.0, <1.8.0'
-elif sysversion == (2,6) or sysversion == (3,2) or sysversion == (3,3):
- numpy_version = '>=1.0, <1.12.0'
-elif IS_PYPY2:
- numpy_version = '>=1.0, <1.16.0'
-elif sysversion == (2,7) or sysversion == (3,4):
- numpy_version = '>=1.0, <1.17.0'
-elif sysversion == (3,5):
- numpy_version = '>=1.0, <1.19.0'
-elif sysversion == (3,6):# or IS_PYPY
- numpy_version = '>=1.0, <1.20.0'
-else:
- numpy_version = '>=1.0'
-dill_version = '>=0.3.4'
-pox_version = '>=0.3.0'
-pathos_version = '>=0.2.8'
-mpi4py_version = '>=1.3, !=3.0.2' # segfault 11 on MPI import
-pypar_version = '>=2.1.4'
-mystic_version = '>=0.3.7'
-# rtd fails for mpi4py, mock it instead
-on_rtd = os.environ.get('READTHEDOCS', None) == 'True'
-if has_setuptools:
- if on_rtd:
- setup_code += """
- zip_safe = False,
- install_requires = ('numpy%s', 'dill%s', 'pox%s', 'pathos%s'),
-""" % (numpy_version, dill_version, pox_version, pathos_version)
- else:
- setup_code += """
- zip_safe = False,
- install_requires = ('numpy%s', 'mpi4py%s', 'dill%s', 'pox%s', 'pathos%s'),
-""" % (numpy_version, mpi4py_version, dill_version, pox_version, pathos_version)
-
-# add the scripts, and close 'setup' call
-setup_code += """
- scripts=['scripts/ezpool','scripts/ezscatter','scripts/mpi_world'])
-"""
-
-# exec the 'setup' code
-exec(setup_code)
-
-# if dependencies are missing, print a warning
-try:
- import numpy
- import dill
- import pox
- import pathos
- import mpi4py #XXX: throws an error even though ok?
- #import pypar
-except ImportError:
- print("\n***********************************************************")
- print("WARNING: One of the following dependencies may be unresolved:")
- print((" numpy %s" % numpy_version))
- print((" dill %s" % dill_version))
- print((" pox %s" % pox_version))
- print((" pathos %s" % pathos_version))
- print((" mpi4py %s" % mpi4py_version))
-# print(" pypar %s (optional)" % pypar_version)
- print("***********************************************************\n")
-
-if sdkroot_set:
- print("\n***********************************************************")
- print("WARNING: One of following variables was set to a default:")
- print((" SDKROOT %s" % sdkroot))
- print("***********************************************************\n")
-else:
- pass
-
-try:
- import mpi4py
-except ImportError:
- print("""
-You may need to set the environment variable "SDKROOT",
-as shown in the instructions for installing ``mpi4py``:
- http://mpi4py.scipy.org/docs/usrman/install.html
-""")
-
-
-if __name__=='__main__':
- pass
-
-# End of file
diff --git a/devel/py-pyina/1t b/devel/py-pyina/1t
deleted file mode 100644
index 8bfd5a12f85b..000000000000
--- a/devel/py-pyina/1t
+++ /dev/null
@@ -1,4 +0,0 @@
-[egg_info]
-tag_build =
-tag_date = 0
-